Construct: ORF ccsbBroadEn_15780
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF014356.1_s300c1, BRDN0000397038
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SS18L1 (26039)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 26039 | SS18L1 | SS18L1 subunit of BAF chrom... | NM_198935.3 | 99.9% | 99.7% | 567G>A |
| 2 | human | 26039 | SS18L1 | SS18L1 subunit of BAF chrom... | XM_005260389.3 | 94.3% | 93% | (many diffs) |
| 3 | human | 26039 | SS18L1 | SS18L1 subunit of BAF chrom... | XM_005260391.1 | 94.2% | 93.9% | 0_1ins66;2T>A;501G>A |
| 4 | human | 26039 | SS18L1 | SS18L1 subunit of BAF chrom... | XM_011528764.2 | 94.2% | 93.9% | 0_1ins66;2T>A;501G>A |
| 5 | human | 26039 | SS18L1 | SS18L1 subunit of BAF chrom... | XM_017027784.2 | 94.1% | 93.9% | 0_1ins69;498G>A |
| 6 | human | 26039 | SS18L1 | SS18L1 subunit of BAF chrom... | XM_011528767.1 | 90.8% | 87.4% | (many diffs) |
| 7 | human | 26039 | SS18L1 | SS18L1 subunit of BAF chrom... | NM_001301778.2 | 66.8% | 66.6% | 0_1ins393;174G>A |
| 8 | human | 26039 | SS18L1 | SS18L1 subunit of BAF chrom... | NR_125981.2 | 31.7% | 1_52del;619G>A;1241_3737del | |
| 9 | human | 26039 | SS18L1 | SS18L1 subunit of BAF chrom... | NR_125980.2 | 28.8% | (many diffs) | |
| 10 | human | 26039 | SS18L1 | SS18L1 subunit of BAF chrom... | XR_001754230.1 | 22.1% | (many diffs) | |
| 11 | mouse | 269397 | Ss18l1 | SS18, nBAF chromatin remode... | NM_178750.5 | 86.9% | 89.5% | (many diffs) |
| 12 | mouse | 269397 | Ss18l1 | SS18, nBAF chromatin remode... | XM_006500631.3 | 81.7% | 83.8% | (many diffs) |
| 13 | mouse | 269397 | Ss18l1 | SS18, nBAF chromatin remode... | XM_006500632.1 | 57.7% | 58.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1254
- ORF length:
- 1188
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgtc cgtggccttc gcgtctgccc ggccaagagg caaaggggag gttacgcagc 121 aaaccatcca gaagatgctg gacgagaacc accacctgat ccagtgcatc ctggagtacc 181 agagcaaggg caagacggcc gagtgcacgc agtaccagca gatcctgcac cggaacctgg 241 tatacctggc cacgatcgca gactccaacc agaacatgca gtccctgctt cctgccccgc 301 ccacgcagaa catgaacctg ggccctggag ccctgactca gagcggctcc agccagggcc 361 tgcactctca gggcagcctg agtgacgcca tcagcacggg cctgccaccc tcctccctcc 421 tgcagggcca gattggcaac gggccgagcc acgtgtccat gcagcagacg gcgcctaaca 481 cgctgcccac cacctccatg agcatctctg ggcccggcta cagccacgcg ggacccgcct 541 cgcagggcgt ccccatgcag gggcaaggca ccatcggcaa ctacgtgtct cggaccaaca 601 tcaacatgca gtccaaccca gtctccatga tacagcagca ggcggccacg tcgcactaca 661 gctcggcgca gggcggcagc cagcactacc agggccagtc gtccatcgcc atgatggggc 721 agggcagcca ggggagcagc atgatggggc agcggcccat ggcgccctac cggccctccc 781 agcaaggctc ttcccagcag tacctgggcc aggaggagta ctatggcgag cagtacagcc 841 acagccaggg cgccgcggag cccatgggcc agcagtacta ccccgacggc catggcgatt 901 acgcctacca gcagtcatcc tacacggagc agagctacga ccggtccttc gaggagtcca 961 cgcagcacta ctatgagggg ggaaactccc agtacagcca gcagcaggcc gggtaccagc 1021 agggtgccgc gcagcagcag acgtactccc agcagcagta ccccagccag cagagctacc 1081 ccgggcagca gcagggctac gggtctgccc agggagcccc gtcacagtac cccggctacc 1141 agcaaggcca aggccagcag tacggaagct accgagcacc gcagacagcg ccgtctgccc 1201 agcagcagcg gccctacggc tatgaacagg gccagtatgg aaattaccag cagtnnccaa 1261 ctttcttgta caaagttggc attataagaa agcattgctt atcaatttgt tgcaacgaac