Construct: ORF ccsbBroadEn_15906
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF012574.1_s300c1, BRDN0000396110
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SLC48A1 (55652)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55652 | SLC48A1 | solute carrier family 48 me... | XM_017019612.1 | 55.4% | 51% | 343_344insT;399_717del |
| 2 | human | 55652 | SLC48A1 | solute carrier family 48 me... | XM_017019614.2 | 55.4% | 51% | 343_344insT;399_717del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 465
- ORF length:
- 399
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgcc caccgctacc gggctgactt tgctgacatc agcatcctca gcgatttctg 121 acccaggggg tgaggtctct gcaccctggg ggggccttag gacctggact cagcctctga 181 gatgttggga gaggctactc ccaccccctg gtgaccccag aactgtggca gaaaatacac 241 agcaggacga gtgtggtctc ccaggaagct gtcctgcccg tcccctttcg aggaaacctg 301 agtgtggtag agaggggatc ctgccatgtt gctcctcatc agcctggcca gagggcagct 361 ttagaccttt tcaaatgaat ctgttttctt ttctttcttt tttttttctt tttttttttt 421 tttttgagat ggagtcttac tctgtcaccc aggctggagt gcagtnncca actttcttgt 481 acaaagttgg cattataaga aagcattgct tatcaatttg ttgcaacgaa c