Construct: ORF ccsbBroadEn_16149
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF000453.1_s300c1, BRDN0000391889
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- EOGT (285203)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 285203 | EOGT | EGF domain specific O-linke... | NR_103826.2 | 9.5% | 1_2340del;2746_4232del |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 471
- ORF length:
- 405
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaag 61 ttggcatgat ctcagctcac tgcaacctct gccttctgga ttcaagtgat tcttgtgcct 121 tagcctccca agtagctggg attacaggcg tgcaccacca cgcccagttg atttttgtat 181 ttttgataga gacggagttt caccatgttg gccaggctgg tctcgaactc tgggttcaag 241 aaatcctccc accttgcctc ccaaagtgct gggattacag gtgtgagcca ccacgcatgg 301 ccctgaactt tctcttttta ggaataccaa agttttcaac tttttcagct ttagaatttg 361 taaatatttt tgtagaatat catatgactg taattccaga gtgttccaac ttgtttatga 421 tatatttggg taaatttaca actgttcttt tatttgccat aatctggtta tnnccaactt 481 tcttgtacaa agttggcatt ataagaaagc attgcttatc aatttgttgc aacgaac