Back to Clone Pool Index

Pool: CP0001 (shRNA) - 55K Human Pool

Name:
CP0001
Type:
shRNA
Taxon:
Human
Vectors:
pLKO.1, pLKO_005
Distinct barcodes:
55754

File Downloads

The files in this table are provided to aid in the analysis of pooled screens. The date of the last update is encoded at the end of the file name in 'YYYYMMDD' format. Be aware that these files may go for periods of time without change. However, each file is the most current edition available of its type, generated by a pipeline that runs periodically and assesses if changes are needed.

Type File Last Changed Target Match Description
1 Reference[?] CP0001_reference_20150109.csv 2015-01-09 n/a n/a Lists all 21mer barcodes contained in the pool, with their associated construct ID(s), if any. Used during initial sequence deconvolution, e.g. with PoolQ.
2 CHIP[?] CP0001_lax_gene_20200722.chip 2020-07-22 gene lax[?] 21mer barcode to gene mapping via lax[?] shRNA target sequence match to gene's transcripts.
3 CHIP[?] CP0001_lax_trans_20200722.chip 2020-07-22 transcript lax[?] 21mer barcode to transcript mapping via lax[?] shRNA target sequence match.
4 CHIP[?] CP0001_origtarget_20131120.chip 2013-11-20 gene n/a 21mer barcode to gene mapping using construct's originally intended target gene, if known.
5 CHIP[?] CP0001_strict_gene_20200722.chip 2020-07-22 gene strict[?] (PREFERRED) 21mer barcode to gene mapping via strict[?] shRNA target sequence match to gene's transcripts.
6 CHIP[?] CP0001_strict_trans_20200722.chip 2020-07-22 transcript strict[?] 21mer barcode to transcript mapping via strict[?] shRNA target sequence match.
Download CSV

Legacy Downloads

The files in page are generated by our current annotation pipeline. If you are looking for some very old annotation of this pool, you may be able to find it here: