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Pool: CP0013 (sgRNA) - GeCKOv2

Name:
CP0013
Type:
S. pyogenes Cas9 CRISPRko
Sub type:
Single insert
Taxon:
Human
Vectors:
pXPR_003
Distinct barcodes:
119461

File Downloads

The files in this table are provided to aid in the analysis of pooled screens. Be aware that these files may go for periods of time without change. However, each file is the most current edition available of its type, generated by a pipeline that runs periodically and assesses if changes are needed.

Refer to this guide for picking the appropriate chip file for your analysis.

Chip Files
Genome Annotation Match Description Last Changed Download

GRCh38 NCBI strict[?] Nmer barcode to gene mapping via strict sgRNA sequence match to NCBI-annotated genes in GRCh38. 2024-01-30 chip [preferred]
lax[?] Nmer barcode to gene mapping via lax sgRNA sequence match to NCBI-annotated genes in GRCh38. 2024-01-30 chip
GRCh38 Ensembl strict[?] Nmer barcode to gene mapping via strict sgRNA sequence match to Ensembl-annotated genes in GRCh38. 2024-01-30 chip [preferred]
lax[?] Nmer barcode to gene mapping via lax sgRNA sequence match to Ensembl-annotated genes in GRCh38. 2024-01-30 chip
GRCh37 NCBI strict[?] Nmer barcode to gene mapping via strict sgRNA sequence match to NCBI-annotated genes in GRCh37. 2022-11-30 chip [preferred]
lax[?] Nmer barcode to gene mapping via lax sgRNA sequence match to NCBI-annotated genes in GRCh37. 2022-11-30 chip
(Original Target) origtarget[?] Nmer barcode to gene mapping using the construct's originally intended target gene, if known. 2019-10-21 chip
Other Files
File Type Description Last Changed Download

GRCh37 BED file Track data in the UCSC BED format, with all perfect sgRNA target sequence (Nmer) matches at PAM sites in GRCh37. 2020-06-17 bed
GRCh38 BED file Track data in the UCSC BED format, with all perfect sgRNA target sequence (Nmer) matches at PAM sites in GRCh38. 2020-06-17 bed
Reference file Associates all Nmer barcodes in the pool with their construct ID(s), if any. Used for sequence deconvolution, e.g., with PoolQ. 2014-11-13 ref