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Pool: CP0040 (sgRNA) - Brunello Kinome 5-8

Name:
CP0040
Type:
SpyoCas9 CRISPRko
Taxon:
Human
Vectors:
pXPR_003
Distinct barcodes:
3152
Addgene ID:
75313

File Downloads

The files in this table are provided to aid in the analysis of pooled screens. The date of the last update is encoded at the end of the file name in 'YYYYMMDD' format. Be aware that these files may go for periods of time without change. However, each file is the most current edition available of its type, generated by a pipeline that runs periodically and assesses if changes are needed.

Type File Last Changed Target Match Description
1 Reference[?] CP0040_reference_20151222.csv 2015-12-22 n/a n/a Lists all 20mer barcodes contained in the pool, with their associated construct ID(s), if any. Used during initial sequence deconvolution, e.g. with PoolQ.
2 CHIP[?] CP0040_17mer_20171120.chip 2017-11-20 gene lax[?] (LEGACY) 20mer barcode to gene mapping via lax[?] match to CDS regions only.
3 CHIP[?] CP0040_GRCh38_NCBI_lax_gene_20210113.chip 2021-01-13 gene lax[?] 20mer barcode to gene mapping via lax[?] sgRNA sequence match to NCBI-annotated genes in GRCh38 primary assembly.
4 CHIP[?] CP0040_GRCh38_NCBI_strict_gene_20210113.chip 2021-01-13 gene strict[?] (PREFERRED) 20mer barcode to gene mapping via strict[?] sgRNA sequence match to NCBI-annotated genes in GRCh38 primary assembly.
5 CHIP[?] CP0040_origtarget_20190304.chip 2019-03-04 gene n/a 20mer barcode to gene mapping using construct's originally intended target gene, if known.
6 BED[?] CP0040_9606_GRCh37_20181031_ontarget.bed 2018-10-31 n/a n/a Genome annotation track data in the UCSC BED format, with all perfect sgRNA target sequence (20mer) matches at PAM sites in target assembly GRCh37.
7 BED[?] CP0040_9606_GRCh38_20181031_ontarget.bed 2018-10-31 n/a n/a Genome annotation track data in the UCSC BED format, with all perfect sgRNA target sequence (20mer) matches at PAM sites in target assembly GRCh38.
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