Back to Clone Pool Index

Pool: CP0057 (sgRNA) - Caprano Set A

Name:
CP0057
Type:
SpyoCas9 CRISPRa
Taxon:
Mouse
Vectors:
pXPR_502
Distinct barcodes:
67187
Addgene ID:
92383

File Downloads

The files in this table are provided to aid in the analysis of pooled screens. Be aware that these files may go for periods of time without change. However, each file is the most current edition available of its type, generated by a pipeline that runs periodically and assesses if changes are needed.

Refer to this guide for picking the appropriate chip file for your analysis.

Chip Files
Genome Annotation Match Description Last Changed Download

GRCm38 NCBI strict[?] 20mer barcode to gene mapping via strict sgRNA sequence match to NCBI-annotated genes in GRCm38. 2022-12-01 chip [preferred]
lax[?] 20mer barcode to gene mapping via lax sgRNA sequence match to NCBI-annotated genes in GRCm38. 2022-12-01 chip
GRCm38 Ensembl strict[?] 20mer barcode to gene mapping via strict sgRNA sequence match to Ensembl-annotated genes in GRCm38. 2022-12-01 chip [preferred]
lax[?] 20mer barcode to gene mapping via lax sgRNA sequence match to Ensembl-annotated genes in GRCm38. 2022-12-01 chip
(Original Target) origtarget[?] 20mer barcode to gene mapping using the construct's originally intended target gene, if known. 2019-10-21 chip
Other Files
File Type Description Last Changed Download

GRCm38 BED file Track data in the UCSC BED format, with all perfect sgRNA target sequence (20mer) matches at PAM sites in GRCm38. 2020-06-17 bed
Reference file Associates all 20mer barcodes in the pool with their construct ID(s), if any. Used for sequence deconvolution, e.g., with PoolQ. 2017-03-01 ref