Transcript: Mouse NM_001033225.2

Mus musculus proline-rich nuclear receptor coactivator 1 (Pnrc1), mRNA.

Source:
NCBI, updated 2017-06-25
Taxon:
Mus musculus (mouse)
Gene:
Pnrc1 (108767)
Length:
1940
CDS:
391..1284

Additional Resources:

NCBI RefSeq record:
NM_001033225.2
NBCI Gene record:
Pnrc1 (108767)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001033225.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000231284 GTGTGAACAACCAAAGATAAA pLKO_005 915 CDS 100% 13.200 18.480 N Pnrc1 n/a
2 TRCN0000231285 CAAATACAACTTGCCACTAAC pLKO_005 948 CDS 100% 10.800 15.120 N Pnrc1 n/a
3 TRCN0000252775 ATTACGCCGGAGCAAAGTTCA pLKO_005 1133 CDS 100% 4.950 6.930 N Pnrc1 n/a
4 TRCN0000231287 CATACTTGAGAGGACATTATA pLKO_005 1472 3UTR 100% 15.000 10.500 N Pnrc1 n/a
5 TRCN0000252778 ATACAGTGGAGATAGTCTAAG pLKO_005 1548 3UTR 100% 10.800 7.560 N Pnrc1 n/a
6 TRCN0000231283 GCCAGCTTGTGCATGGTATAC pLKO_005 890 CDS 100% 10.800 7.560 N Pnrc1 n/a
7 TRCN0000231286 TCTGCTTCCTCCGATCGAATG pLKO_005 1015 CDS 100% 6.000 4.200 N Pnrc1 n/a
8 TRCN0000252776 CTGATGGCAGTGCACTTGAAA pLKO_005 1240 CDS 100% 5.625 3.938 N Pnrc1 n/a
9 TRCN0000252777 CGAGTCACTGGATGGGAAGTA pLKO_005 1190 CDS 100% 4.950 3.465 N Pnrc1 n/a
10 TRCN0000252779 CCATTTGAAGAAATCAGCATT pLKO_005 1086 CDS 100% 4.950 2.970 N Pnrc1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001033225.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.