Transcript: Mouse NM_001076681.2

Mus musculus LYR motif containing 9 (Lyrm9), mRNA.

Source:
NCBI, updated 2017-05-21
Taxon:
Mus musculus (mouse)
Gene:
Lyrm9 (66274)
Length:
5053
CDS:
58..294

Additional Resources:

NCBI RefSeq record:
NM_001076681.2
NBCI Gene record:
Lyrm9 (66274)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NM_001076681.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000346146 AGCTGTACCGTTACTTGTTAC pLKO_005 101 CDS 100% 10.800 15.120 N Lyrm9 n/a
2 TRCN0000267808 AGAGCCTGGACAGGGTATTTA pLKO_005 4504 3UTR 100% 15.000 12.000 N Lyrm9 n/a
3 TRCN0000346207 CCGACTGGATCATGAACAAAT pLKO_005 257 CDS 100% 13.200 10.560 N Lyrm9 n/a
4 TRCN0000264109 AGAGAATCCAGCAGATTATTA pLKO_005 218 CDS 100% 15.000 10.500 N LYRM9 n/a
5 TRCN0000346204 CATGCTGTCAGGCAGAGTTTC pLKO_005 169 CDS 100% 10.800 7.560 N Lyrm9 n/a
6 TRCN0000264108 GCATGCTGTCAGGCAGAGTTT pLKO_005 168 CDS 100% 4.950 3.465 N LYRM9 n/a
7 TRCN0000267854 GAGAGAATCCAGCAGATTATT pLKO_005 217 CDS 100% 15.000 9.000 N Lyrm9 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001076681.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.