Transcript: Human NM_001130864.2

Homo sapiens PWWP domain containing 2A (PWWP2A), transcript variant 2, mRNA.

Source:
NCBI, updated 2019-05-01
Taxon:
Homo sapiens (human)
Gene:
PWWP2A (114825)
Length:
3373
CDS:
63..2330

Additional Resources:

NCBI RefSeq record:
NM_001130864.2
NBCI Gene record:
PWWP2A (114825)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001130864.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000265448 GGCAAGTTCTGTGTGATAAAT pLKO_005 1015 CDS 100% 15.000 21.000 N PWWP2A n/a
2 TRCN0000253888 GACACATATAACCAATCAATA pLKO_005 900 CDS 100% 13.200 10.560 N PWWP2A n/a
3 TRCN0000253886 CAGCAGAGGCAGAGTAGTAAA pLKO_005 1241 CDS 100% 13.200 9.240 N PWWP2A n/a
4 TRCN0000253885 TAGCCTTTCTATGCGCATAAT pLKO_005 2871 3UTR 100% 13.200 9.240 N PWWP2A n/a
5 TRCN0000253887 TGGTATCCCTGTGACAGTATT pLKO_005 659 CDS 100% 13.200 9.240 N PWWP2A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001130864.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.