Transcript: Human NM_001145451.4

Homo sapiens Rho guanine nucleotide exchange factor 33 (ARHGEF33), transcript variant 1, mRNA.

Source:
NCBI, updated 2019-07-19
Taxon:
Homo sapiens (human)
Gene:
ARHGEF33 (100271715)
Length:
4487
CDS:
264..2876

Additional Resources:

NCBI RefSeq record:
NM_001145451.4
NBCI Gene record:
ARHGEF33 (100271715)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001145451.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000344412 TCCAGCGCCTCCGAGTATTTA pLKO_005 1543 CDS 100% 15.000 21.000 N ARHGEF33 n/a
2 TRCN0000344473 CAGGAGCACCCTGACTATTAT pLKO_005 1506 CDS 100% 15.000 10.500 N ARHGEF33 n/a
3 TRCN0000344474 AGTTAACAAATGACGAGAATA pLKO_005 1300 CDS 100% 13.200 9.240 N ARHGEF33 n/a
4 TRCN0000344414 ATAATCCTTCCACGCAGATTT pLKO_005 313 CDS 100% 13.200 9.240 N ARHGEF33 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001145451.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.