Transcript: Human NM_001348512.1

Homo sapiens coiled-coil domain containing 85A (CCDC85A), transcript variant 1, mRNA.

Source:
NCBI, updated 2018-07-01
Taxon:
Homo sapiens (human)
Gene:
CCDC85A (114800)
Length:
4082
CDS:
503..2263

Additional Resources:

NCBI RefSeq record:
NM_001348512.1
NBCI Gene record:
CCDC85A (114800)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NM_001348512.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000257467 GCTCATTACATAACGAGTTAA pLKO_005 3596 3UTR 100% 13.200 18.480 N CCDC85A n/a
2 TRCN0000246095 GCCTGAACCTGTGGTACATTC pLKO_005 2047 CDS 100% 10.800 8.640 N CCDC85A n/a
3 TRCN0000257472 AGGTTCGTGTCCTGGAATTAG pLKO_005 2203 CDS 100% 13.200 9.240 N CCDC85A n/a
4 TRCN0000257469 GCACAAGGAAGTGGCCTTATA pLKO_005 913 CDS 100% 13.200 9.240 N CCDC85A n/a
5 TRCN0000246094 CCAACTAGAAACAGCTCAAAT pLKO_005 1844 CDS 100% 13.200 7.920 N CCDC85A n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NM_001348512.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.