Transcript: Mouse NR_045119.1

Mus musculus NLR family, pyrin domain containing 5, pseudogene (Nlrp5-ps), transcript variant 1, non-coding RNA.

Source:
NCBI, updated 2017-05-11
Taxon:
Mus musculus (mouse)
Gene:
Nlrp5-ps (100417675)
Length:
3919
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_045119.1
NBCI Gene record:
Nlrp5-ps (100417675)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse NR_045119.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000269317 ACTTGGGCTCACCTGCATTAA pLKO_005 1745 3UTR 100% 13.200 18.480 N Vmn1r90 n/a
2 TRCN0000269315 CATTAACCTTCATAGCATTAA pLKO_005 1760 3UTR 100% 13.200 10.560 N Vmn1r90 n/a
3 TRCN0000269316 CTAAGGGACAGGTAAGCATTT pLKO_005 1788 3UTR 100% 10.800 8.640 N Vmn1r90 n/a
4 TRCN0000269371 ATTCAATGTGATGGCTATAAT pLKO_005 2109 3UTR 100% 15.000 10.500 N Vmn1r90 n/a
5 TRCN0000269314 CTAGTGGACTGCCAACTTATG pLKO_005 1396 3UTR 100% 0.000 0.000 N Vmn1r90 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_045119.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.