Transcript: Human NR_134983.2

Homo sapiens poly(A) binding protein cytoplasmic 1 like (PABPC1L), transcript variant 2, non-coding RNA.

Source:
NCBI, updated 2019-08-26
Taxon:
Homo sapiens (human)
Gene:
PABPC1L (80336)
Length:
1977
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_134983.2
NBCI Gene record:
PABPC1L (80336)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_134983.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000240334 CATTGACAACAAGGCTTTATA pLKO_005 411 3UTR 100% 15.000 10.500 N PABPC1L n/a
2 TRCN0000240331 TCTCTCCCTATGGAGTAATTA pLKO_005 1025 3UTR 100% 15.000 10.500 N PABPC1L n/a
3 TRCN0000240333 GCTTTGGCTTTGTCAACTTTG pLKO_005 779 3UTR 100% 10.800 7.560 N PABPC1L n/a
4 TRCN0000256971 GGGTTTCGGCTTTGTCCATTT pLKO_005 498 3UTR 100% 10.800 7.560 N PABPC1L n/a
5 TRCN0000240332 AGGAAATCCTCGCTTCCATGG pLKO_005 1790 3UTR 100% 2.250 1.575 N PABPC1L n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_134983.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.