Transcript: Mouse XM_006507908.3

PREDICTED: Mus musculus C2 calcium-dependent domain containing 3 (C2cd3), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
C2cd3 (277939)
Length:
7090
CDS:
612..6965

Additional Resources:

NCBI RefSeq record:
XM_006507908.3
NBCI Gene record:
C2cd3 (277939)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006507908.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000251871 CGCAGGATTGCACGGATATTT pLKO_005 6909 CDS 100% 15.000 21.000 N C2cd3 n/a
2 TRCN0000251872 GCCTATGGCAACGACAATTTA pLKO_005 4434 CDS 100% 15.000 21.000 N C2cd3 n/a
3 TRCN0000265251 GTCTGGTGCAGATACTATTAT pLKO_005 3279 CDS 100% 15.000 21.000 N C2cd3 n/a
4 TRCN0000251870 GACGAATGTAGAGACTATAAC pLKO_005 785 CDS 100% 13.200 18.480 N C2cd3 n/a
5 TRCN0000258165 GGCCACTAGCATCACCCTATT pLKO_005 7044 3UTR 100% 10.800 8.640 N C2cd3 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006507908.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.