Transcript: Mouse XM_006525136.3

PREDICTED: Mus musculus cullin 9 (Cul9), transcript variant X4, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Cul9 (78309)
Length:
8351
CDS:
616..8253

Additional Resources:

NCBI RefSeq record:
XM_006525136.3
NBCI Gene record:
Cul9 (78309)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006525136.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000243434 CCGCAGCGGTTATGGTGAATA pLKO_005 1776 CDS 100% 13.200 18.480 N Cul9 n/a
2 TRCN0000243432 TGGCCGTGGGCAATCTCATTT pLKO_005 1571 CDS 100% 13.200 9.240 N Cul9 n/a
3 TRCN0000243436 ATGAATGGCGTCCGCTCTTTG pLKO_005 2951 CDS 100% 10.800 7.560 N Cul9 n/a
4 TRCN0000243435 ATTGTTCCGGGAGCAACTATG pLKO_005 4578 CDS 100% 10.800 7.560 N Cul9 n/a
5 TRCN0000243433 GAGCCTTCATCCGTAACATTG pLKO_005 7049 CDS 100% 10.800 7.560 N Cul9 n/a
6 TRCN0000427037 AGCGGTTTCAGGACTATAATG pLKO_005 7544 CDS 100% 13.200 18.480 N CUL9 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006525136.3, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.