Transcript: Mouse XM_006525476.1

PREDICTED: Mus musculus synaptopodin (Synpo), transcript variant X7, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Synpo (104027)
Length:
4966
CDS:
416..3121

Additional Resources:

NCBI RefSeq record:
XM_006525476.1
NBCI Gene record:
Synpo (104027)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006525476.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000252881 CCACGCCCACTAAGGTGTATA pLKO_005 1041 CDS 100% 13.200 18.480 N Synpo n/a
2 TRCN0000252880 GGAAGTGCCATTGGTAGTTTA pLKO_005 481 CDS 100% 13.200 10.560 N Synpo n/a
3 TRCN0000252879 AGAACCCGTCCTCACCTAATG pLKO_005 627 CDS 100% 10.800 7.560 N Synpo n/a
4 TRCN0000252878 TGATGGGAAGACGACAGTTTG pLKO_005 1167 CDS 100% 10.800 7.560 N Synpo n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006525476.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.