Transcript: Mouse XM_006532689.1

PREDICTED: Mus musculus bromodomain PHD finger transcription factor (Bptf), transcript variant X15, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Bptf (207165)
Length:
10911
CDS:
1..8916

Additional Resources:

NCBI RefSeq record:
XM_006532689.1
NBCI Gene record:
Bptf (207165)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_006532689.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000238663 GAACGGAGGATTCGACAATTT pLKO_005 3607 CDS 100% 13.200 18.480 N Bptf n/a
2 TRCN0000238660 GACCGTAACCTCGTTCATATT pLKO_005 9017 3UTR 100% 13.200 18.480 N Bptf n/a
3 TRCN0000238661 ACCGGATTATTACGGTGTTAT pLKO_005 8658 CDS 100% 13.200 10.560 N Bptf n/a
4 TRCN0000238662 GACGACGATGACTCCGATTAT pLKO_005 541 CDS 100% 13.200 9.240 N Bptf n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_006532689.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.