Transcript: Mouse XM_011247618.1

PREDICTED: Mus musculus predicted gene 5127 (Gm5127), transcript variant X2, mRNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Gm5127 (331493)
Length:
1974
CDS:
660..1340

Additional Resources:

NCBI RefSeq record:
XM_011247618.1
NBCI Gene record:
Gm5127 (331493)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_011247618.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000284208 CAGTAGAGACACGCCACATAA pLKO_005 1060 CDS 100% 13.200 18.480 N Gm5127 n/a
2 TRCN0000347177 CTAAGAATCTTCAACGTATAT pLKO_005 1281 CDS 100% 13.200 18.480 N Gm5127 n/a
3 TRCN0000347175 CTATCTCAGCATGCGTGATAA pLKO_005 913 CDS 100% 13.200 18.480 N Gm5127 n/a
4 TRCN0000284210 TGTATTTCCGAGACCATTATA pLKO_005 1315 CDS 100% 15.000 12.000 N Gm5127 n/a
5 TRCN0000347109 TTCCCTGGAGAAGACTATTTC pLKO_005 1804 3UTR 100% 13.200 7.920 N Gm5127 n/a
Download CSV

shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_011247618.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

Download CSV

All ORF constructs matching this transcript

No results found.