Transcript: Human XM_017005715.2

PREDICTED: Homo sapiens collagen type VI alpha 6 chain (COL6A6), transcript variant X11, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
COL6A6 (131873)
Length:
9928
CDS:
397..7188

Additional Resources:

NCBI RefSeq record:
XM_017005715.2
NBCI Gene record:
COL6A6 (131873)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017005715.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000256620 TGAAGCTCAGGACATAGTAAA pLKO_005 2592 CDS 100% 13.200 18.480 N COL6A6 n/a
2 TRCN0000256617 CTTCGGCAAGAAGGTGTAATC pLKO_005 2629 CDS 100% 10.800 15.120 N COL6A6 n/a
3 TRCN0000256616 GCCATGGGTGGCAGTACTTAT pLKO_005 3037 CDS 100% 13.200 10.560 N COL6A6 n/a
4 TRCN0000256618 CCCTGCATTCATTGGTATTAA pLKO_005 7305 3UTR 100% 15.000 10.500 N COL6A6 n/a
5 TRCN0000256619 ATGAACTGAAGAAGGTCAATA pLKO_005 3881 CDS 100% 13.200 9.240 N COL6A6 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017005715.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.