Transcript: Mouse XR_001779409.1

PREDICTED: Mus musculus jumonji domain containing 1C (Jmjd1c), transcript variant X6, misc_RNA.

Source:
NCBI, updated 2016-06-22
Taxon:
Mus musculus (mouse)
Gene:
Jmjd1c (108829)
Length:
11475
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
XR_001779409.1
NBCI Gene record:
Jmjd1c (108829)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XR_001779409.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000231334 TGGTGCTCTATGGCATATTTA pLKO_005 9149 3UTR 100% 15.000 21.000 N Jmjd1c n/a
2 TRCN0000231331 CTGGCGGTCTACGTGGAATTT pLKO_005 2175 3UTR 100% 13.200 18.480 N Jmjd1c n/a
3 TRCN0000231335 TGATTCAATGCTAGCTATAAA pLKO_005 10834 3UTR 100% 15.000 10.500 N Jmjd1c n/a
4 TRCN0000231333 AGTAACTACTTCACTACTTTA pLKO_005 5268 3UTR 100% 13.200 9.240 N Jmjd1c n/a
5 TRCN0000231332 ATGACCTTGAGTGGGATAAAC pLKO_005 2197 3UTR 100% 13.200 9.240 N Jmjd1c n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XR_001779409.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

No results found.