Nucleotide Global Alignment

Description

Query:
TRCN0000465404
Subject:
XR_001752626.2
Aligned Length:
2157
Identities:
992
Gaps:
1164

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GATTGCTCGGGCCTGGCCGCCAGCCCAGGGGCCGATGGCCGAGCGCGTCGCACTCGCGTCCCTGCGCCGTGCCT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCCTCGCGCTCCCTGTTACGGCGTTCGTCCCCGGGCCTGGCGCCCGCGTCCGGCCCGGCTCCGCGGCGGCCTGG  148

Query    1  ----ATGGCTCCTCAGCGGAGGGCCGCAACCAAGGCGCCCGAGGGCAACGGAGCGGCCGAGCGCCGGAACCGGA  70
                ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  149  TCCGATGGCTCCTCAGCGGAGGGCCGCAACCAAGGCGCCCGAGGGCAACGGAGCGGCCGAGCGCCGGAACCGGA  222

Query   71  GCAGCACCAAGAAGGACCGAGCCCCGCGGGAGGTGCAGAGGCTGTGGCAGAGGCCGTGGCTAAGGACCGCGGGC  144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  GCAGCACCAAGAAGGACCGAGCCCCGCGGGAGGTGCAGAGGCTGTGGCAGAGGCCGTGGCTAAGGACCGCGGGC  296

Query  145  CTGGGGGCTGGCTTTGTGCTCACCGCACTCCTGCTCTGGAGCAGCTTGGGGGCCGACGACGGGGTCGCAGAGGT  218
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  297  CTGGGGGCTGGCTTTGTGCTCACCGCACTCCTGCTCTGGAGCAGCTTGGGGGCCGACGACGGGGTCGCAGAGGT  370

Query  219  CCTGGCCCGCCGTGGCGAGGTCGTGGCAGGGAGATTCATCGAGGTGCCCTGCTCTGAGGACTACGACAGTCACC  292
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  CCTGGCCCGCCGTGGCGAGGTCGTGGCAGGGAGATTCATCGAGGTGCCCTGCTCTGAGGACTACGACAGTCACC  444

Query  293  GCAGGTTCGAAGGCTGCACTCCCCGAAAGTGCGGCAGAGGTGTCACCGATGTCGTCATCACCAGGGAGGAAGCG  366
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  GCAGGTTCGAAGGCTGCACTCCCCGAAAGTGCGGCAGAGGTGTCACCGATGTCGTCATCACCAGGGAGGAAGCG  518

Query  367  GAGCGGATTCGCAGCGTAGCTGAAAAGGGGCTCTCCCTGGGAGGATCTGACGGAGGGGCATCCATTCTGGACTT  440
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  GAGCGGATTCGCAGCGTAGCTGAAAAGGGGCTCTCCCTGGGAGGATCTGACGGAGGGGCATCCATTCTGGACTT  592

Query  441  GCACTCAGGGGCCCTGTCTGTCGGGAAGCACTTTGTGAACCTGTACAGATACTTCGGGGATAAAATACAGAACA  514
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GCACTCAGGGGCCCTGTCTGTCGGGAAGCACTTTGTGAACCTGTACAGATACTTCGGGGATAAAATACAGAACA  666

Query  515  TCTTCTCAGAGGAGGACTTCCGGTTATACCGGGAGGTGCGGCAGAAGGTCCAGCTCACCATTGCTGAGGCTTTT  588
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  TCTTCTCAGAGGAGGACTTCCGGTTATACCGGGAGGTGCGGCAGAAGGTCCAGCTCACCATTGCTGAGGCTTTT  740

Query  589  GGCATCAGCGCATCCTCGCTGCATCTGACCAAGCCCACCTTCTTCTCCCGCATAAACAGCACGGAAGCGCGGAC  662
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  GGCATCAGCGCATCCTCGCTGCATCTGACCAAGCCCACCTTCTTCTCCCGCATAAACAGCACGGAAGCGCGGAC  814

Query  663  GGCGCACGACGAGTACTGGCATGCGCACGTGGACAAGGTGACCTACGGCTCCTTCGACTACACCTCGCTGCTGT  736
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  GGCGCACGACGAGTACTGGCATGCGCACGTGGACAAGGTGACCTACGGCTCCTTCGACTACACCTCGCTGCTGT  888

Query  737  ACCTCTCCAACTACCTGGAGGACTTCGGCGGAGGGCGGTTCATGTTCATGGAGGAGGGTGCCAACAAGACGGTG  810
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  ACCTCTCCAACTACCTGGAGGACTTCGGCGGAGGGCGGTTCATGTTCATGGAGGAGGGTGCCAACAAGACGGTG  962

Query  811  GAGCGGAGAGCTGGATGTTTTTGTTTCCGGATGATGTCTTGTGGGTTCCAAGAAGTTAATGGACCGAGAGCCAG  884
            ||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  GAGCCGAGAGCTGGATGTTTTTGTTTCCGGATGATGTCTTGTGGGTTCCAAGAAGTTAATGGACCGAGAGCCAG  1036

Query  885  TGAAGCTGCTGGTGCGAAGGCTGGAGTCAGGTGTCCTCCGGGGACTCACCACCCGCCCGAGAGGGGAGAGACAC  958
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  TGAAGCTGCTGGTGCGAAGGCTGGAGTCAGGTGTCCTCCGGGGACTCACCACCCGCCCGAGAGGGGAGAGACAC  1110

Query  959  ATGCGATTCTGGAAGCTGAGAGCATTGCTTATTGT---------------------------------------  993
            |||||||||||||||||||||||||||||||||||                                       
Sbjct 1111  ATGCGATTCTGGAAGCTGAGAGCATTGCTTATTGTTGATTCCTTGGTTGCCGTGCTGAGTCCTGCTTTAAGGAA  1184

Query  994  --------------------------------------------------------------------------  993
                                                                                      
Sbjct 1185  GCAGGCACAGTGCAACTGACTCCCTCTTGAAGCTAGAATGCCCTGCACACCCGGGATGGACTTCTCTCCCCTTT  1258

Query  994  --------------------------------------------------------------------------  993
                                                                                      
Sbjct 1259  CAAAGATCGAGTGAAGTTTGCAAATGTGAAAGGAAGGAATTGCATTTCCAGTGGTAACCTTTGAAGGGGAATGA  1332

Query  994  --------------------------------------------------------------------------  993
                                                                                      
Sbjct 1333  AATTGTCACAGGACGTCAGGAGCCACGTGGGGGAGCCCGGTGTCCTCTGAGTCTCAACGCCCCTTGCTTCCCAC  1406

Query  994  --------------------------------------------------------------------------  993
                                                                                      
Sbjct 1407  TTGGTGACGGTCGATGGCTGTGTCCAGCGGTGAACGCTTTACCACAGGACTCTACGGTGGGGTAGGCAGCGCCA  1480

Query  994  --------------------------------------------------------------------------  993
                                                                                      
Sbjct 1481  CTTCAATGTGAAGACAAATGAACTGGCGTCTCTTGAGATAGGCCCCTGCCTCCAGGACCTCTCAGGCCCCGGGC  1554

Query  994  --------------------------------------------------------------------------  993
                                                                                      
Sbjct 1555  CCTGGTTACTGCCGTGGAAGCTGCCTGTTCAGACGTCATCTCTATCACCCCTTGAAGGGAGACAGAGAGGTCGC  1628

Query  994  --------------------------------------------------------------------------  993
                                                                                      
Sbjct 1629  GTCTCCTTCTTCACCTCGGGGTCCGAGAACCTACACCGCGTGGAGAAGGTCCACTGGGGCACCCGTTACGCCAT  1702

Query  994  --------------------------------------------------------------------------  993
                                                                                      
Sbjct 1703  CACCATCGCCTTCAGCTGCAACCCCGACCATGGCATCGAGGACCCAGCGTTCCCGTAGCCAGCAGCCGGGCCAA  1776

Query  994  --------------------------------------------------------------------------  993
                                                                                      
Sbjct 1777  GGTAACTTCAGGAGGGCCCGTGTGGAGGCAGCCGCGCCAGTCGTGCACCCACCCCCACGTCCACCCGCTCCTGT  1850

Query  994  --------------------------------------------------------------------------  993
                                                                                      
Sbjct 1851  TGCACAGAGTGCCTTAGGAATTCTCTGATTTTGATTTGCTGACGTGTTAATCTTTTCATCTGTGAGTAAATGAA  1924

Query  994  --------------------------------------------------------------------------  993
                                                                                      
Sbjct 1925  GGGAACCAGCTTTTCACTTCTCCAGCATCATGTGTGCTTGGGCTGTAGGCCTGGGAGCCTGAGGTGGAGGCCAG  1998

Query  994  --------------------------------------------------------------------------  993
                                                                                      
Sbjct 1999  GAAAGGGACCCAGCAGGACGGGGCACAAGTCCCCATCTGTGAATGGACGGGACTCATCCACCCAGGTTCAGCAA  2072

Query  994  --------------------------------------------------------------------------  993
                                                                                      
Sbjct 2073  CCCCCCGGGACTCGTCCAGGTTCAGCAACCCCCCGGCCCATCAAAGACTGGCTAAAGCATCAGCCATAAATGGG  2146

Query  994  -----------  993
                       
Sbjct 2147  GACAAACGTGG  2157

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.