Nucleotide Global Alignment
Description
- Query:
- TRCN0000465457
- Subject:
- NR_158610.1
- Aligned Length:
- 3514
- Identities:
- 1449
- Gaps:
- 2029
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 GGGCACCGCGGGGCAGCGGCGCCGCAGCCTGGGCTGGCGGAACCTCGCGCTCCGACTCGCCCCCCGCCTGTAGC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCGGTCGGCGTTGCGGGCAGGCGCCGCTCCGCTGGGGATTGCTATGCTATGCCTTGTATGACTAAGACCTCTTA 148
Query 1 -----------------------------------------------------ATGAAACAGCCCAACAGGAAA 21
|||||||||||||||||||||
Sbjct 149 CCAAGAATACGTGTCAGACCATAAAACCACTGCCAAGGAGTGCGGGGGTGGCAATGAAACAGCCCAACAGGAAA 222
Query 22 AGGAAGCTTAATATGGATTCCAAAGAGCGTTTGGATCAGGACGGACGCTTGGAGCAAGCTGAAGAGGAAAAGAA 95
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 AGGAAGCTTAATATGGATTCCAAAGAGCGTTTGGATCAGGACGGACGCTTGGAGCAAGCTGAAGAGGAAAAGAA 296
Query 96 GCCCAAGGATAGCACAACCCCTTTGAGTCACGTCCCTTCAGCGGCTGCACAGGGAGCATGGTCTTGGGAGTGGT 169
|||||||||||||||||||||||||||||||
Sbjct 297 GCCCAAGGATAGCACAACCCCTTTGAGTCAC------------------------------------------- 327
Query 170 ACTTGAAAGAACAGAAGGCTGTCGCAGCACCTGTTGAGCTGTTTTCCAAGGATCAGTCCTTTCCAGAGCATGAA 243
|||||||||||||||||||||||||
Sbjct 328 -------------------------------------------------GGATCAGTCCTTTCCAGAGCATGAA 352
Query 244 AATGGTTTTCAGATTGGAATGAGATTAGAAGGCATTGATCCCCGACATCCATCGGTATTCTGTGTGCTTTCTGT 317
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 AATGGTTTTCAGATTGGAATGAGATTAGAAGGCATTGATCCCCGACATCCATCGGTATTCTGTGTGCTTTCTGT 426
Query 318 AGCGGAGGTTTGTGGTTACCGTCTAAGACTTCATTTTGATGGTTATTTAAGTTGCTATGATTTTTGGACCAATG 391
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 427 AGCGGAGGTTTGTGGTTACCGTCTAAGACTTCATTTTGATGGTTATTTAAGTTGCTATGATTTTTGGACCAATG 500
Query 392 CTGGTTCCCCTGACATTCATCCAGTAGGATGGTGTGAAAAGACCAAACATGAACTGCACATCCCTAAGGGTTAT 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 CTGGTTCCCCTGACATTCATCCAGTAGGATGGTGTGAAAAGACCAAACATGAACTGCACATCCCTAAGGGTTAT 574
Query 466 AGAAAAGATAAATTTGTTTGGATGGATTACTTGAAGGCCTGCAAATTGCAAAATGCTCCAAAGAAATTATTCAG 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 575 AGAAAAGATAAATTTGTTTGGATGGATTACTTGAAGGCCTGCAAATTGCAAAATGCTCCAAAGAAATTATTCAG 648
Query 540 AAACAGAAGTCCTAATGGGCCAATGTCTAAAGAATTTCAGGTTGGAATGAAGCTGGAGGCCGTGGACAGGAAGA 613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 AAACAGAAGTCCTAATGGGCCAATGTCTAAAGAATTTCAGGTTGGAATGAAGCTGGAGGCCGTGGACAGGAAGA 722
Query 614 ACCCTTCCTTGGTGTGTGTGGCGACCATAGCAGATATTGTTGAAGATCGCTTACTAGTGCATTTTGACAACTGG 687
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 ACCCTTCCTTGGTGTGTGTGGCGACCATAGCAGATATTGTTGAAGATCGCTTACTAGTGCATTTTGACAACTGG 796
Query 688 GATGATAGTTACGATTACTGGTGCGATGTTAATAGCCCTTATGTCCAGCCAGTTGGTTGGTGTCAGGAGAATGG 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 797 GATGATAGTTACGATTACTGGTGCGATGTTAATAGCCCTTATGTCCAGCCAGTTGGTTGGTGTCAGGAGAATGG 870
Query 762 AAGAACTCTGATAGCACCCCAAGGTTATCCCAATCCAGAAAATTTTTCCTGGACAGAATACCTGGAAGCTACTC 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 871 AAGAACTCTGATAGCACCCCAAGGTTATCCCAATCCAGAAAATTTTTCCTGGACAGAATACCTGGAAGCTACTC 944
Query 836 AAACCAATGCAGTTCCTGCCAAAGTTTTTAAAATGAGGTTGCCTCATGGTTTTCTGCCAAATATGAAACTTGAA 909
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 945 AAACCAATGCAGTTCCTGCCAAAGTTTTTAAAATGAGGTTGCCTCATGGTTTTCTGCCAAATATGAAACTTGAA 1018
Query 910 GTTGTGGATAAACGGAACCCCAGGTTAATTCGTGTTGCTACGATTGTAGATGTTGATGACCAAAGAGTAAAGGT 983
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GTTGTGGATAAACGGAACCCCAGGTTAATTCGTGTTGCTACGATTGTAGATGTTGATGACCAAAGAGTAAAGGT 1092
Query 984 TCATTTTGATGGTTGGGACCATAAGTATGACTACTGGGTGGAGGCAGACAGCCCTGATATCCACCCGATCGGAT 1057
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093 TCATTTTGATGGTTGGGACCATAAGTATGACTACTGGGTGGAGGCAGACAGCCCTGATATCCACCCGATCGGAT 1166
Query 1058 GGTGTGATGTCACAGGGCATCCACTGGAAGTGCCACAGCGAACGAATGACCTGAAGATCCTTCCAGGTCAAGCT 1131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1167 GGTGTGATGTCACAGGGCATCCACTGGAAGTGCCACAGCGAACGAATGACCTGAAGATCCTTCCAGGTCAAGCT 1240
Query 1132 GTCTGTCCTACTCCCGGGTGCCGAGGAATAGGCCATATCCGTGGTCCACGTTATTCGGGACATCACAGTGCTTT 1205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 GTCTGTCCTACTCCCGGGTGCCGAGGAATAGGCCATATCCGTGGTCCACGTTATTCGGGACATCACAGTGCTTT 1314
Query 1206 TGGCTGCCCGTATTCAGACATGAACTTGAAAAAGGAGGCAACACTTCACGATCGTTTGAGAGAACAAACACAGG 1279
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 TGGCTGCCCGTATTCAGACATGAACTTGAAAAAGGAGGCAACACTTCACGATCGTTTGAGAGAACAAACACAGG 1388
Query 1280 CAAATTTGGAATCAGACTCTTCACATTCAAAATCAAAAAGCCTCTGTAGTTTGAACTTCAATGGAAAACATGAA 1353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389 CAAATTTGGAATCAGACTCTTCACATTCAAAATCAAAAAGCCTCTGTAGTTTGAACTTCAATGGAAAACATGAA 1462
Query 1354 AAGGTGAACAGTCAGCCCAGACT------TGTA-------CAGCAGG-------------------------CA 1389
|||||||||||||||||||||.| ||.| ||||||| ||
Sbjct 1463 AAGGTGAACAGTCAGCCCAGAATACTCGGTGGAGCAGGCGCAGCAGGTGCTTCACCAGTCAGTGTCCATGTCCA 1536
Query 1390 AAGTGT----------TT-----------------------GAAAATCA----AAG------------------ 1408
..|||| || ||..|.|| |||
Sbjct 1537 CGGTGTCAGCCCACCCTTTTCGGGACCTTCCCCTCGGCAGGGAGCAACACTGCAAGTTGCTTCCAGGCGTGGCT 1610
Query 1409 GAAA--------AG--AAG----ATATT-GACT-TGGAT-------------------AATCTCTTC------- 1440
||.| || ||| |..|| |||| ||||| |.|||||||
Sbjct 1611 GACATCCGGGCCAGCCAAGTGGCACGTTGGACTGTGGATGAGGTGGCTGAGTTTGTACAGTCTCTTCTGGGCTG 1684
Query 1441 ---AGAG---GCCGAGTG------------------CGGTGGC-------TCATGCCT---------------- 1467
|||| |||.|||| ||.|||| ||.|||.|
Sbjct 1685 TGAAGAGCATGCCAAGTGCTTTAAGAAAGAGCAGATCGATGGCAAAGCCTTCCTGCTTCTGACACAGACGGACA 1758
Query 1468 --------GTAAT---------------CCCAGCACT-----TT----------------------GGGAGGCC 1491
||.|| ||||||||| || ||.|..||
Sbjct 1759 TTGTCAAAGTGATGAAGATCAAACTGGGCCCAGCACTGAAGATTTACAACTCTATCCTGATGTTCAGGCATTCC 1832
Query 1492 GAGG------------------------CAGGCAGATCACGAGATCAGGAGATCAA----------GACCATC- 1530
.||| ||||| ||.||..|||||.|||.|| ||.|.||
Sbjct 1833 CAGGAACTCCCTGAAGAAGATATTGCCTCAGGC----CAAGAAGTCAGGGGATGAATGGGCTCCCTGAACTTCC 1902
Query 1531 -CTGGCCAACGCAGTGAAACC-CCGTCTCTACCAAAAATACAAAA------------AATTAG----------- 1579
||||| ||..|| ||| .|| ||||..||..||| |||| ||||.|
Sbjct 1903 TCTGGC--ACCAAG----ACCTGCG-CTCTTTCAGCAAT--AAAAGTGGAGCACATTAATTTGATGTGAATGTC 1967
Query 1580 -CCAGGCGTGGTGGCGGGCGCCTA-------------------------------------------------- 1602
||| |||| |.||
Sbjct 1968 CCCA-------TGGC-----CGTATCCACACTGAATCTGGACTTTTTAAAGTGTCTGTGATTTGTTTACATGTT 2029
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 2030 TAGAGGATTTTGATGACTGGTCCAGTGCCAATGACTCAGAGGCTTAGGCCCATCTGTGGGTTTGGTTTACGAAC 2103
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 2104 ATTGTTATCTTTGGTGGGATCCGCTCAGCTCTGATTTGTTTGCAAGACAGACCAAAGAAGCCCACACATCCACC 2177
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 2178 TTTATTCTTCTCCGTCACCAGAAAAGAAACCATTTTCCATCTTACAAGCATAACACTCTCAAGTGGTGAAATAT 2251
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 2252 TAGAAAAGCAGTGTTCATGAATACATCGTTAATGTTTTTACCAGAGCAACATCGAGCTTGGCTCAGATCTGCCA 2325
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 2326 TGGAGCACAGCTAGTCTAAGAGCTAGAGGCCTGGTGCTTTCAAAAGACTTCATGTGAGATTTTTGTGTACTTTA 2399
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 2400 CTCAGGAAAGTGTGAATCTCTAAAAAATAATAATAATAAGCACATGTTTTCATGATTCATTAATTCTCCTTTTT 2473
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 2474 GTTCCATTAACCATTTCTTGGTTGTGCTCCCAAGCTTTCCTGGAGCCTCCACAAAGGAGAGTAGCCAGGAGTAA 2547
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 2548 TGAGAGGACGGTCAGGTGGGCACTTCCAAAAGCTGGAGAGACCCTTCTGAGGACCCTCCACCATCAGCGGGGCC 2621
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 2622 TCAGGGGACCCTGTCCTAACACTGGTGTGGCTGCTGGGCCAGACGCTCACCTGCACAGAACTCCTCCCTGCTCC 2695
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 2696 CACTCTGAAGGGCGTTTCAGAATTGACTCATTTCCACTGCAGTCTGCCAGAACCCCTGTAATAAGGAGCTGTGT 2769
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 2770 TATATTACATCTGGGGCTGTGTGCATCTTTACAAATGGAGACACACTATTCAAAGGGAAGATCTCTAAAGTAGG 2843
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 2844 GAGCGTGGTACTTATTCTTTGTTTGAAACATTCCGATTTGTTGTCAGGCCTTATTTGTTTTTTGTAAGTGATTG 2917
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 2918 TATCGGAGGCTTAAGTTGTGTGGAATCAGTCCCACAGTGTTGAAAGACAAGTACCTCTTTTCTGACACTTCTTA 2991
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 2992 CTACTTTTACAGGTAGTAACAGCTACAAATACTCTCCCAGAAGTGGAGGGACACCATTTGTGGGTGGGGAGAAA 3065
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 3066 GAGGGAGAGGTTCTATGTCCACTTGCTTCATTAAGAATGTTAAGGTTTAAGAAAGTTGATTCTGCTTGGAGAAT 3139
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 3140 TTCTCAAGCTTTACATTTTTTTTTCACTGAAGAAAATAAACAAACTCTAAGAGGTGTGCATATATAACATTTCT 3213
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 3214 TTAGATCTTTACCTAAAAGGAATTTTAATATATTATTGGTTGATGTAAATTTTGTTTCTGTGGAGTTTTGTTTG 3287
Query 1603 -------------------------------------------------------------------------- 1602
Sbjct 3288 TTTTGCTTTTTGTAGACTGCCATGTGCAAGTAAAATTCCTGCTTCTGCCATGTTAAAATTTTAATATATTTTAA 3361
Query 1603 ------------------------------------ 1602
Sbjct 3362 ATGATAATAAACAGAGAAAACAAAATTTATACCTCA 3397
