Nucleotide Global Alignment

Description

Query:
TRCN0000465457
Subject:
NR_158610.1
Aligned Length:
3514
Identities:
1449
Gaps:
2029

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GGGCACCGCGGGGCAGCGGCGCCGCAGCCTGGGCTGGCGGAACCTCGCGCTCCGACTCGCCCCCCGCCTGTAGC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCGGTCGGCGTTGCGGGCAGGCGCCGCTCCGCTGGGGATTGCTATGCTATGCCTTGTATGACTAAGACCTCTTA  148

Query    1  -----------------------------------------------------ATGAAACAGCCCAACAGGAAA  21
                                                                 |||||||||||||||||||||
Sbjct  149  CCAAGAATACGTGTCAGACCATAAAACCACTGCCAAGGAGTGCGGGGGTGGCAATGAAACAGCCCAACAGGAAA  222

Query   22  AGGAAGCTTAATATGGATTCCAAAGAGCGTTTGGATCAGGACGGACGCTTGGAGCAAGCTGAAGAGGAAAAGAA  95
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  223  AGGAAGCTTAATATGGATTCCAAAGAGCGTTTGGATCAGGACGGACGCTTGGAGCAAGCTGAAGAGGAAAAGAA  296

Query   96  GCCCAAGGATAGCACAACCCCTTTGAGTCACGTCCCTTCAGCGGCTGCACAGGGAGCATGGTCTTGGGAGTGGT  169
            |||||||||||||||||||||||||||||||                                           
Sbjct  297  GCCCAAGGATAGCACAACCCCTTTGAGTCAC-------------------------------------------  327

Query  170  ACTTGAAAGAACAGAAGGCTGTCGCAGCACCTGTTGAGCTGTTTTCCAAGGATCAGTCCTTTCCAGAGCATGAA  243
                                                             |||||||||||||||||||||||||
Sbjct  328  -------------------------------------------------GGATCAGTCCTTTCCAGAGCATGAA  352

Query  244  AATGGTTTTCAGATTGGAATGAGATTAGAAGGCATTGATCCCCGACATCCATCGGTATTCTGTGTGCTTTCTGT  317
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  353  AATGGTTTTCAGATTGGAATGAGATTAGAAGGCATTGATCCCCGACATCCATCGGTATTCTGTGTGCTTTCTGT  426

Query  318  AGCGGAGGTTTGTGGTTACCGTCTAAGACTTCATTTTGATGGTTATTTAAGTTGCTATGATTTTTGGACCAATG  391
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  427  AGCGGAGGTTTGTGGTTACCGTCTAAGACTTCATTTTGATGGTTATTTAAGTTGCTATGATTTTTGGACCAATG  500

Query  392  CTGGTTCCCCTGACATTCATCCAGTAGGATGGTGTGAAAAGACCAAACATGAACTGCACATCCCTAAGGGTTAT  465
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  501  CTGGTTCCCCTGACATTCATCCAGTAGGATGGTGTGAAAAGACCAAACATGAACTGCACATCCCTAAGGGTTAT  574

Query  466  AGAAAAGATAAATTTGTTTGGATGGATTACTTGAAGGCCTGCAAATTGCAAAATGCTCCAAAGAAATTATTCAG  539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  575  AGAAAAGATAAATTTGTTTGGATGGATTACTTGAAGGCCTGCAAATTGCAAAATGCTCCAAAGAAATTATTCAG  648

Query  540  AAACAGAAGTCCTAATGGGCCAATGTCTAAAGAATTTCAGGTTGGAATGAAGCTGGAGGCCGTGGACAGGAAGA  613
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  649  AAACAGAAGTCCTAATGGGCCAATGTCTAAAGAATTTCAGGTTGGAATGAAGCTGGAGGCCGTGGACAGGAAGA  722

Query  614  ACCCTTCCTTGGTGTGTGTGGCGACCATAGCAGATATTGTTGAAGATCGCTTACTAGTGCATTTTGACAACTGG  687
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  723  ACCCTTCCTTGGTGTGTGTGGCGACCATAGCAGATATTGTTGAAGATCGCTTACTAGTGCATTTTGACAACTGG  796

Query  688  GATGATAGTTACGATTACTGGTGCGATGTTAATAGCCCTTATGTCCAGCCAGTTGGTTGGTGTCAGGAGAATGG  761
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  797  GATGATAGTTACGATTACTGGTGCGATGTTAATAGCCCTTATGTCCAGCCAGTTGGTTGGTGTCAGGAGAATGG  870

Query  762  AAGAACTCTGATAGCACCCCAAGGTTATCCCAATCCAGAAAATTTTTCCTGGACAGAATACCTGGAAGCTACTC  835
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  871  AAGAACTCTGATAGCACCCCAAGGTTATCCCAATCCAGAAAATTTTTCCTGGACAGAATACCTGGAAGCTACTC  944

Query  836  AAACCAATGCAGTTCCTGCCAAAGTTTTTAAAATGAGGTTGCCTCATGGTTTTCTGCCAAATATGAAACTTGAA  909
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  945  AAACCAATGCAGTTCCTGCCAAAGTTTTTAAAATGAGGTTGCCTCATGGTTTTCTGCCAAATATGAAACTTGAA  1018

Query  910  GTTGTGGATAAACGGAACCCCAGGTTAATTCGTGTTGCTACGATTGTAGATGTTGATGACCAAAGAGTAAAGGT  983
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019  GTTGTGGATAAACGGAACCCCAGGTTAATTCGTGTTGCTACGATTGTAGATGTTGATGACCAAAGAGTAAAGGT  1092

Query  984  TCATTTTGATGGTTGGGACCATAAGTATGACTACTGGGTGGAGGCAGACAGCCCTGATATCCACCCGATCGGAT  1057
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1093  TCATTTTGATGGTTGGGACCATAAGTATGACTACTGGGTGGAGGCAGACAGCCCTGATATCCACCCGATCGGAT  1166

Query 1058  GGTGTGATGTCACAGGGCATCCACTGGAAGTGCCACAGCGAACGAATGACCTGAAGATCCTTCCAGGTCAAGCT  1131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1167  GGTGTGATGTCACAGGGCATCCACTGGAAGTGCCACAGCGAACGAATGACCTGAAGATCCTTCCAGGTCAAGCT  1240

Query 1132  GTCTGTCCTACTCCCGGGTGCCGAGGAATAGGCCATATCCGTGGTCCACGTTATTCGGGACATCACAGTGCTTT  1205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241  GTCTGTCCTACTCCCGGGTGCCGAGGAATAGGCCATATCCGTGGTCCACGTTATTCGGGACATCACAGTGCTTT  1314

Query 1206  TGGCTGCCCGTATTCAGACATGAACTTGAAAAAGGAGGCAACACTTCACGATCGTTTGAGAGAACAAACACAGG  1279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315  TGGCTGCCCGTATTCAGACATGAACTTGAAAAAGGAGGCAACACTTCACGATCGTTTGAGAGAACAAACACAGG  1388

Query 1280  CAAATTTGGAATCAGACTCTTCACATTCAAAATCAAAAAGCCTCTGTAGTTTGAACTTCAATGGAAAACATGAA  1353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1389  CAAATTTGGAATCAGACTCTTCACATTCAAAATCAAAAAGCCTCTGTAGTTTGAACTTCAATGGAAAACATGAA  1462

Query 1354  AAGGTGAACAGTCAGCCCAGACT------TGTA-------CAGCAGG-------------------------CA  1389
            |||||||||||||||||||||.|      ||.|       |||||||                         ||
Sbjct 1463  AAGGTGAACAGTCAGCCCAGAATACTCGGTGGAGCAGGCGCAGCAGGTGCTTCACCAGTCAGTGTCCATGTCCA  1536

Query 1390  AAGTGT----------TT-----------------------GAAAATCA----AAG------------------  1408
            ..||||          ||                       ||..|.||    |||                  
Sbjct 1537  CGGTGTCAGCCCACCCTTTTCGGGACCTTCCCCTCGGCAGGGAGCAACACTGCAAGTTGCTTCCAGGCGTGGCT  1610

Query 1409  GAAA--------AG--AAG----ATATT-GACT-TGGAT-------------------AATCTCTTC-------  1440
            ||.|        ||  |||    |..|| |||| |||||                   |.|||||||       
Sbjct 1611  GACATCCGGGCCAGCCAAGTGGCACGTTGGACTGTGGATGAGGTGGCTGAGTTTGTACAGTCTCTTCTGGGCTG  1684

Query 1441  ---AGAG---GCCGAGTG------------------CGGTGGC-------TCATGCCT----------------  1467
               ||||   |||.||||                  ||.||||       ||.|||.|                
Sbjct 1685  TGAAGAGCATGCCAAGTGCTTTAAGAAAGAGCAGATCGATGGCAAAGCCTTCCTGCTTCTGACACAGACGGACA  1758

Query 1468  --------GTAAT---------------CCCAGCACT-----TT----------------------GGGAGGCC  1491
                    ||.||               |||||||||     ||                      ||.|..||
Sbjct 1759  TTGTCAAAGTGATGAAGATCAAACTGGGCCCAGCACTGAAGATTTACAACTCTATCCTGATGTTCAGGCATTCC  1832

Query 1492  GAGG------------------------CAGGCAGATCACGAGATCAGGAGATCAA----------GACCATC-  1530
            .|||                        |||||    ||.||..|||||.|||.||          ||.|.|| 
Sbjct 1833  CAGGAACTCCCTGAAGAAGATATTGCCTCAGGC----CAAGAAGTCAGGGGATGAATGGGCTCCCTGAACTTCC  1902

Query 1531  -CTGGCCAACGCAGTGAAACC-CCGTCTCTACCAAAAATACAAAA------------AATTAG-----------  1579
             |||||  ||..||    ||| .|| ||||..||..|||  ||||            ||||.|           
Sbjct 1903  TCTGGC--ACCAAG----ACCTGCG-CTCTTTCAGCAAT--AAAAGTGGAGCACATTAATTTGATGTGAATGTC  1967

Query 1580  -CCAGGCGTGGTGGCGGGCGCCTA--------------------------------------------------  1602
             |||       ||||     |.||                                                  
Sbjct 1968  CCCA-------TGGC-----CGTATCCACACTGAATCTGGACTTTTTAAAGTGTCTGTGATTTGTTTACATGTT  2029

Query 1603  --------------------------------------------------------------------------  1602
                                                                                      
Sbjct 2030  TAGAGGATTTTGATGACTGGTCCAGTGCCAATGACTCAGAGGCTTAGGCCCATCTGTGGGTTTGGTTTACGAAC  2103

Query 1603  --------------------------------------------------------------------------  1602
                                                                                      
Sbjct 2104  ATTGTTATCTTTGGTGGGATCCGCTCAGCTCTGATTTGTTTGCAAGACAGACCAAAGAAGCCCACACATCCACC  2177

Query 1603  --------------------------------------------------------------------------  1602
                                                                                      
Sbjct 2178  TTTATTCTTCTCCGTCACCAGAAAAGAAACCATTTTCCATCTTACAAGCATAACACTCTCAAGTGGTGAAATAT  2251

Query 1603  --------------------------------------------------------------------------  1602
                                                                                      
Sbjct 2252  TAGAAAAGCAGTGTTCATGAATACATCGTTAATGTTTTTACCAGAGCAACATCGAGCTTGGCTCAGATCTGCCA  2325

Query 1603  --------------------------------------------------------------------------  1602
                                                                                      
Sbjct 2326  TGGAGCACAGCTAGTCTAAGAGCTAGAGGCCTGGTGCTTTCAAAAGACTTCATGTGAGATTTTTGTGTACTTTA  2399

Query 1603  --------------------------------------------------------------------------  1602
                                                                                      
Sbjct 2400  CTCAGGAAAGTGTGAATCTCTAAAAAATAATAATAATAAGCACATGTTTTCATGATTCATTAATTCTCCTTTTT  2473

Query 1603  --------------------------------------------------------------------------  1602
                                                                                      
Sbjct 2474  GTTCCATTAACCATTTCTTGGTTGTGCTCCCAAGCTTTCCTGGAGCCTCCACAAAGGAGAGTAGCCAGGAGTAA  2547

Query 1603  --------------------------------------------------------------------------  1602
                                                                                      
Sbjct 2548  TGAGAGGACGGTCAGGTGGGCACTTCCAAAAGCTGGAGAGACCCTTCTGAGGACCCTCCACCATCAGCGGGGCC  2621

Query 1603  --------------------------------------------------------------------------  1602
                                                                                      
Sbjct 2622  TCAGGGGACCCTGTCCTAACACTGGTGTGGCTGCTGGGCCAGACGCTCACCTGCACAGAACTCCTCCCTGCTCC  2695

Query 1603  --------------------------------------------------------------------------  1602
                                                                                      
Sbjct 2696  CACTCTGAAGGGCGTTTCAGAATTGACTCATTTCCACTGCAGTCTGCCAGAACCCCTGTAATAAGGAGCTGTGT  2769

Query 1603  --------------------------------------------------------------------------  1602
                                                                                      
Sbjct 2770  TATATTACATCTGGGGCTGTGTGCATCTTTACAAATGGAGACACACTATTCAAAGGGAAGATCTCTAAAGTAGG  2843

Query 1603  --------------------------------------------------------------------------  1602
                                                                                      
Sbjct 2844  GAGCGTGGTACTTATTCTTTGTTTGAAACATTCCGATTTGTTGTCAGGCCTTATTTGTTTTTTGTAAGTGATTG  2917

Query 1603  --------------------------------------------------------------------------  1602
                                                                                      
Sbjct 2918  TATCGGAGGCTTAAGTTGTGTGGAATCAGTCCCACAGTGTTGAAAGACAAGTACCTCTTTTCTGACACTTCTTA  2991

Query 1603  --------------------------------------------------------------------------  1602
                                                                                      
Sbjct 2992  CTACTTTTACAGGTAGTAACAGCTACAAATACTCTCCCAGAAGTGGAGGGACACCATTTGTGGGTGGGGAGAAA  3065

Query 1603  --------------------------------------------------------------------------  1602
                                                                                      
Sbjct 3066  GAGGGAGAGGTTCTATGTCCACTTGCTTCATTAAGAATGTTAAGGTTTAAGAAAGTTGATTCTGCTTGGAGAAT  3139

Query 1603  --------------------------------------------------------------------------  1602
                                                                                      
Sbjct 3140  TTCTCAAGCTTTACATTTTTTTTTCACTGAAGAAAATAAACAAACTCTAAGAGGTGTGCATATATAACATTTCT  3213

Query 1603  --------------------------------------------------------------------------  1602
                                                                                      
Sbjct 3214  TTAGATCTTTACCTAAAAGGAATTTTAATATATTATTGGTTGATGTAAATTTTGTTTCTGTGGAGTTTTGTTTG  3287

Query 1603  --------------------------------------------------------------------------  1602
                                                                                      
Sbjct 3288  TTTTGCTTTTTGTAGACTGCCATGTGCAAGTAAAATTCCTGCTTCTGCCATGTTAAAATTTTAATATATTTTAA  3361

Query 1603  ------------------------------------  1602
                                                
Sbjct 3362  ATGATAATAAACAGAGAAAACAAAATTTATACCTCA  3397

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