Nucleotide Global Alignment
Description
- Query:
- TRCN0000465568
- Subject:
- XR_244354.5
- Aligned Length:
- 5220
- Identities:
- 816
- Gaps:
- 4402
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TTAAAAGTGCTGGGAGCAGGTGAGCCACAGGCAACTCTTCTCTCGGAACCTGCACACAAACTGGGGCTATAGAG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ATTCTCCAAGGACAGATGGCAGTGGAGCTAGACCTGAGTAGGGGGCAGGGAGTTCAGGACAACCCTCCTGTAAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTGGGGGTGGTCTGGGGGTAAGGCTGGGGCTTCCTGGGAAAAGGAAGGCCATGAGAAGGCAGAGAAGTAGGCCA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 GAGCTGGGTTCTTGCAGAAAGCATCAGTGCCTACAAATGGAGCTCCACCCTTCAGTCTGTGTCGTGTTCAGTGT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CACAAAGCTACCACCTGTCACCAGAGCCTACTGCTGCTCTCCACTCAACTGGCCTCTGCTGCCAGGCCACTGCC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TGTCTCTGCTTCCGACTTTGTCTTCTTTCTCCCTTTCCCTCCTTCCCTCATACATTGCTTTCTCTCCCTCTCCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCGTGTCTCTGACATCTCTCACTTCCTTTTAGATGAATCTACTTTAGGTTCATTCCTATATTTAGCATTTATGC 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 CCAGTCTACTTCCAGAAATGACTTTAGACTGCCTTTCACATAAAATCACAAAACTACAGGACAGTACAAACAGA 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 TTGCCAGAGAAATCTGGGTCAAAGAAAGGAATAGGAAAGAAAGTTTCTGTAGTCAAGCACCTGAACAGGCCCTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 AGCTCACAGGCAGCCAATGTAAAGAGGGAAACACAGTGAGTTATGCAGTTCCCAGTGTCCAGTTAAAGGAAGCA 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CACATGCTAGTCATGTGAGACAACCTTTTATTGGGACATCAGGTTCTAGAACTAATTCTAAAGAAGTATCAGAA 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ACAATATACATAATTTGTCTTTCTTAGTAATTTGGCTTCAAAGACAAATTTTTGACCACACCTCCGTTTTCTCC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 GTCAGACTTCTCTCCCTTCTAAGCAGGCTTCTCTGTTGCTCCATTTGCTTCATACATACTTGACCTCTCTTTTC 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 TATTCCCCATCACTTTTGTGCTGAAGCTAATCATATTTATGTCTGTCTTTCTCTACTTTTCCCTAATTCCCTCT 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 CCTCCTGACTCCTGTAGACATTCCCAATGATACCCACCGTCATACATTTAGGCTTTTCTTGCCTTTCCCTGAAG 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CCCTGTATTTATTAATGCATATATTTCCCCTGCTTGTTGTACAAGTAAGTTACTCTTTTCCTTTAATCTGTAAG 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 ATTCATGAAATTCGGGGCCAGGGAAACAGTTTAGCCTTAGGGAAGGGAAAACACTAAGTGAAACTGTTTACAAT 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 AACCTCATACAACCTTCTGTCCCATCTCCTGGTTCAGCCTAGGTGTTTCACTGGTCCTCTATGAATCCCAGCAC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 TTATAATCCCAGTCTTTTATCACTCAGGTGCTAGGAAAAAAAACATAGACTCAAGACCCAAGATTCAATGGACC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 AGGAGAAAGGGGGGCGGTGATCAGGTCACCAGTGACCCCAACCTATGCTCTCGGTCTTTCCTGGAGGCTGCCAA 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 CCCAGCCCTCATCCTCCCTTGCTCACAAAGTTACAGGGTAGGCACCTGTCAGGACAGAACAGCAGCAGCGCTAC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 AGCCCAGAGGTTATACATTTCAACAGAACAGGGATCCTTGGCTACTGTAGAAGCAGTCCTGTATGGAGACCTTG 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 GACCAGCAGGGGAAGATCTATGGGCATGGGAGGTGGGCGTTGGAAAGGCTGAGTAGGAATGGTGCCTGGCACCC 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 CTGAACCATGATCTGAGCCTCCCTGGAGAAGGTATTTTATATGTCTGCTGCCAGCTGCTGGTCTCCACACCCTC 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 AACCGTTCTCAACCCCCCTGCAGGGAGAAGGCCTCCTGGGCACTGTCCTTCCACCTGTGCCAGCCACCCCCTGC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 CCCACTGCTGAATGAAGGCCATTTCAAGCGCTGCTTCTCACTCCATTCCTCTCAGCTGTTATTGCTGCAGGGCC 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 AAGCCCTTTTTAGTGCTGTGCTCGTCCAGCTCACCACCACAGCCCCTCTCAGCCCTCAGTAGGTGGGAGGGGCC 1998
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1999 AGCTGCCTCTTTAGGCCAGTTGCATCCTCCATTTATCCAAACCACTCCTCTCCTCCCAGTGGAGTGGGGTTCTG 2072
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2073 CCAGTACAGCCCTACTGCATCATCTGCGTCAGCCGGTCCTAGCCCATCTGCAGGGTGAAAGAACTCATCAAGAG 2146
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2147 CTCCTTCTGCCCTTGTAAGCCCATCCCAGCTACTTGTAACCATCTCTAAGGGCAATGGCATTGCTCCCTACCCA 2220
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2221 TTCATCTGCATGAGCTACTCTTGGCTTCCTTAAAGGGTCAAGAAAGCAATTTTTCTGCTTACTAGATTCATTGA 2294
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2295 GATCAGCTGTGTGAGCCCCAAAGTGGGACAAGGGTGTCTCCTTCATTACTTAAAGATATTCATGAGGGTGGGTC 2368
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2369 ACTACAGATGTTGGGGAGCAAGGGCTAGGATCACTTTTTAAAAAATCACCACTTGTGGCTGTCCCAGAGTGCGG 2442
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2443 TTGTACATCCTCCCCACCTCATAACGCAGCCACTGAGGAAGAGTGGTTTTCCTAAGAAGACATTGCTGGAGTTG 2516
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2517 ACTTTCTTCTGTCCAAACAAACAAACAAAAACTAAACACACACACAAACCCCCAGAAACCCACAATATGTACAC 2590
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2591 GCTAAGGAAAAACTAGCACCCTTCTGTCCACTCAGCAATAAGAGGGATCTCTTCCCACCTACCCTACCTACTCC 2664
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2665 TACCCCCAACCCCCTTCCCCATTAATGTGAGTAATGAATTAGCCTGACCACAGGTGGTCACTGTAGGCTAATGG 2738
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2739 AAAATACCCAAGGGAGGGCAAAGCCCCCCATCAGATGCATGAATGTTTGCGAATGTTGACTGCCACTGCCCCAC 2812
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2813 ACACTGTGTCTTTATAGAATTCCCCTTTGCCCACCCTCTTCCTGTCTCCACCTGGACACAACTTGCTCAAAGGC 2886
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2887 TGGTGACTTGTGGGCCATTCATCTACAACCAAGTCCTGATGGAGCAAGAGGCCCACGCCTAGGGGATGCAAGAA 2960
Query 1 -------------------------------------------------------------------------- 0
Sbjct 2961 CAACCCGTTTCTTAAATGTTACCAGTCCCAGCCAATCTTACGGTGACATTACAGTTAAATTTCCCAATTGAAAA 3034
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3035 CAAGCAAACAGACACTCAAACTGGTCCTGTAATTGTTGCTAGACTTTATGTGTTGTACAACTAAACATTGCTGT 3108
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3109 TTGAACAGTAACTGCCTGGCCTGTCTTATTTGTGCTCCTTGACCAAATCAGCCATTATGTCATCTCACCCATGT 3182
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3183 GTGGAGGGTGAGACTCTCTTGGTAAGAAATAGCCACAGATATTAGAGATGAAAACACTTTGTGAGGTCAGTTCA 3256
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3257 TCTTCAGTTGGCGTCAGGTCGGGCCTCAGTCATTATTTTCTAGTGTTTCATAACCAAAGTGAGTAATGGATGGG 3330
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3331 AGGTTGAGGTGGGAAGATGGCTTGAGCATGGGAGGTTGGAGGTGCAGTGAGCTGAGATCATTCCTGACAGGACC 3404
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3405 AACCCAAGTCCATACCTAAAGGCAGGGGGCTAAGGGGGCAGGTGAGGTCGGGAGGCCACTCACCTATCACTCAC 3478
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3479 CCCTTCGCGCTCGAGCCAATTCTCAGGGCCCGCCTCTTTCTCCCCTTTCTCGGCGGGGGCCTCTACCCTGACTC 3552
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3553 CGCCCCGCTCCCCGGGCACTGCCCCACCACGTGACCCGGTCTCGCTCCTCCTCCTCCTCCTCCTTACGTCATAA 3626
Query 1 -------------------------------------------------------------------------- 0
Sbjct 3627 TCTCCGCCCTCCCCTTCAGAACCGCGCCCCACAGCTCGGCGCAGGTCCCGCCCCTTTCCATCTACGGGGCGGCA 3700
Query 1 ----------------ATGGCGGTGAATCAGAGCCACACCGAGAACCGCCGCGGAGCCCTCATCCCTAACGGTG 58
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3701 GGAGGCCCGAAGCAAGATGGCGGTGAATCAGAGCCACACCGAGAACCGCCGCGGAGCCCTCATCCCTAACGGTG 3774
Query 59 AAAGTCTCTTGAAGCGGTCTCCGAATGTGGAGCTCTCCTTCCCACAGCGATCAGAAGGCTCAAATGTCTTTAGT 132
|||
Sbjct 3775 AAA----------------------------------------------------------------------- 3777
Query 133 GGTAGAAAGACAGGAACATTGTTTCTCACTTCATACCGGGTGATTTTCATAACTTCATGCTCCATCAGTGATCC 206
||||||||||||||||||||||||||||||||||||
Sbjct 3778 --------------------------------------GGTGATTTTCATAACTTCATGCTCCATCAGTGATCC 3813
Query 207 CATGTTGTCTTTTATGATGCCATTTGATCTGATGACGAACCTCACTGTTGAACAACCAGTATTTGCTGCAAACT 280
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3814 CATGTTGTCTTTTATGATGCCATTTGATCTGATGACGAACCTCACTGTTGAACAACCAGTATTTGCTGCAAACT 3887
Query 281 TCATTAAGGGAACTATTCAGGCAGCTCCATATGGTGGCTGGGAAGGACAAGCTACTTTTAAATTAGTCTTCAGA 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3888 TCATTAAGGGAACTATTCAGGCAGCTCCATATGGTGGCTGGGAAGGACAAGCTACTTTTAAATTAGTCTTCAGA 3961
Query 355 AATGGAGGTGCCATTGAATTTGCCCAGTTGATGGTGAAAGCTGCCTCTGCTGCTGCCCGAGGATTTCCACTTAG 428
|||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3962 AATGGAGATGCCATTGAATTTGCCCAGTTGATGGTGAAAGCTGCCTCTGCTGCTGCCCGAGGATTTCCACTTAG 4035
Query 429 AACCTTAAATGACTGGTTCAGCTCTATGGGAATTTATGTAATTACTGGGGAAGGGAATATGTGCACTCCACAGA 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4036 AACCTTAAATGACTGGTTCAGCTCTATGGGAATTTATGTAATTACTGGGGAAGGGAATATGTGCACTCCACAGA 4109
Query 503 TGCCTTGTTCAGTTATTGTCTATGGAGCCCCACCTGCAGGATATGGAGCCCCACCTCCCGGATACGGAGCCCCA 576
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4110 TGCCTTGTTCAGTTATTGTCTATGGAGCCCCACCTGCAGGATATGGAGCCCCACCTCCCGGATACGGAGCCCCA 4183
Query 577 CCTGCAGGATATGGAGCCCAACCCGTAGGAAATGAAGGCCCGCCTGTGGGATACAGAGCCTCACCTGTGCGATA 650
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4184 CCTGCAGGATATGGAGCCCAACCCGTAGGAAATGAAGGCCCGCCTGTGGGATACAGAGCCTCACCTGTGCGATA 4257
Query 651 TGGAGCCCCACCTCTTGGATACGGAGCCCCACCTGCAGGATATGGAGCCCCACCTCTAGGATATGGAGCCCCAC 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4258 TGGAGCCCCACCTCTTGGATACGGAGCCCCACCTGCAGGATATGGAGCCCCACCTCTAGGATATGGAGCCCCAC 4331
Query 725 CTCTTGGATATGGAACCCCACCTCTCGGATATGGAGCCCCACCTCTCGGATATGGAGCCCCACCTGCAGGAAAT 798
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4332 CTCTTGGATATGGAACCCCACCTCTCGGATATGGAGCCCCACCTCTCGGATATGGAGCCCCACCTGCAGGAAAT 4405
Query 799 GAAGGCCCGCCTGCGGGATACAGAGCCTCACCTGCTGGATCAGGAGCCAGGCCTCACGAATCTACAGCAGCCCA 872
||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||
Sbjct 4406 GAAGGCCCGCCTGCGGGATACAGAGCCTCACCTGCTGGATCAGGAGCCAGGCCTCAGGAATCTACAGCAGCCCA 4479
Query 873 GGCTCCTGAAAACGAGGCTTCTCTTCCCTCTGCCTCCTCTTCTCAGGTCCATTCT------------------- 927
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4480 GGCTCCTGAAAACGAGGCTTCTCTTCCCTCTGCCTCCTCTTCTCAGGTCCATTCTTAACCTTCTAAGATGTAAA 4553
Query 928 -------------------------------------------------------------------------- 927
Sbjct 4554 CCTTGAAGACTCACCAAGCAAAGAGGTACCCTAAAATTGAAGTCAGGATAAGGAGGACGACTCAGCTTAGAGTC 4627
Query 928 -------------------------------------------------------------------------- 927
Sbjct 4628 ATTGATTGATCTGCATTGTGAAAATTAGGAAACCAGATGCTCCCATGTTCTCAAGGACAGCCTTTCTTAAGGAA 4701
Query 928 -------------------------------------------------------------------------- 927
Sbjct 4702 GTCAGTACGTGGGCAACAGTGATGAGAGGAAGAGAGGAGAGACTCAACCAACTAGAGCAGGGATAAGGTTTCCC 4775
Query 928 -------------------------------------------------------------------------- 927
Sbjct 4776 TTGTTCAGCTTTTCAGTGTCTGCTGGAATGTGATGATTACCTCATTGTCAGGTAGGAAGTGAAACGTATGATAT 4849
Query 928 -------------------------------------------------------------------------- 927
Sbjct 4850 TCTTCCTGGCCTTTGCCTTGAGAGTCTTCTGGAGCCTGAAGAGGGTGGGGCAGACAACCATGGACTGCTAGAGA 4923
Query 928 -------------------------------------------------------------------------- 927
Sbjct 4924 ATAAACTTTCTTTGAAGCTTCCTAAATGGATTAGAAAGAAGGGGTTCTGTCAAAGGGAAAGGGTCTATACAGAT 4997
Query 928 -------------------------------------------------------------------------- 927
Sbjct 4998 GTGACCAGCAGTTTGATTAGTTTAGATGTATGATTTAGTAGCCAATATAAGAAACTTGTAATTTTTAGTAATTA 5071
Query 928 ---------------------------------------- 927
Sbjct 5072 GAATTTATTATAAATAATAAAACAGGGTATTAATTATTAA 5111
