Nucleotide Global Alignment
Description
- Query:
- TRCN0000465646
- Subject:
- XM_006513099.3
- Aligned Length:
- 3798
- Identities:
- 1528
- Gaps:
- 2061
Alignment
Query 1 ATGAGACTGTTCGTGAGTGATGGCGTCCCGGGTTGCTTGCCGGTGCTGGCCGCCGCCGGGAGAGCCCGGGGCAG 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 AGCAGAGGTGCTCATCAGCACTGTAGGCCCGGAAGATTGTGTGGTCCCGTTCCTGACCCGGCCTAAGGTCCCTG 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 TCTTGCAGCTGGATAGCGGCAACTACCTCTTCTCCACTAGTGCAATCTGCCGATATTTTTTTTTGTTATCTGGC 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 TGGGAGCAAGATGACCTCACTAACCAGTGGCTGGAATGGGAAGCGACAGAGCTGCAGCCAGCTTTGTCTGCTGC 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 CCTGTACTATTTAGTGGTCCAAGGCAAGAAGGGGGAAGATGTTCTTGGTTCAGTGCGGAGAGCCCTGACTCACA 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 TTGACCACAGCTTGAGTCGTCAGAACTGTCCTTTCCTGGCTGGGGAGACAGAATCTCTAGCCGACATTGTTTTG 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 TGGGGAGCCCTATACCCATTACTGCAAGATCCCGCCTACCTCCCTGAGGAGCTGAGTGCCCTGCACAGCTGGTT 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 CCAGACACTGAGTACCCAGGAACCATGTCAGCGAGCTGCAGAGACTGTACTGAAACAGCAAGGTGTCCTGGCTC 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 TCCGGCCTTACCTCCAAAAGCAGCCCCAGCCCAGCCCCGCTGAGGGAAGGGCTGTCACCAATGAGCCTGAGGAG 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 GAGGAGCTGGCTACCCTATCTGAGGAGGAGATTGCTATGGCTGTTACTGCTTGGGAGAAGGGCCTAGAAAGTTT 740
Sbjct 1 -------------------------------------------------------------------------- 0
Query 741 GCCCCCGCTGCGGCCCCAGCAGAATCCAGTGTTGCCTGTGGCTGGAGAAAGGAATGTGCTCATCACCAGTGCCC 814
Sbjct 1 -------------------------------------------------------------------------- 0
Query 815 TCCCTTACGTCAACAATGTCCCCCACCTTGGGAACATCATTGGTTGTGTGCTCAGTGCCGATGTCTTTGCCAGG 888
Sbjct 1 -------------------------------------------------------------------------- 0
Query 889 TACTCTCGCCTCCGCCAGTGGAACACCCTCTATCTGTGTGGGACAGATGAGTATGGTACAGCAACAGAGACCAA 962
Sbjct 1 -------------------------------------------------------------------------- 0
Query 963 GGCTCTGGAGGAGGGACTAACCCCCCAGGAGATCTGCGACAAGTACCACATCATCCATGCTGACATCTACCGCT 1036
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1037 GGTTTAACATTTCGTTTGATATTTTTGGTCGCACCACCACTCCACAGCAGACCAAAATCACCCAGGACATTTTC 1110
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1111 CAGCAGTTGCTGAAACGAGGTTTTGTGCTGCAAGATACTGTGGAGCAACTGCGATGTGAGCACTGTGCTCGCTT 1184
Sbjct 1 -------------------------------------------------------------------------- 0
Query 1185 CCTGGCTGACCGCTTCGTGGAGGGCGTGTGTCCCTTCTGTGGCTATGAGGAG-GC--TCGGGGTGACCAGTGTG 1255
.||.||.||||.|| || ||.||| .||||
Sbjct 1 --------------------------------------ATGTCTCTGAGCAGTGCCTTCAGGG------CTGTG 30
Query 1256 ACAAGTGTGGCAA---------GCTCATCA-ATGCTGTCGAG-CTTAAGAAAATGGAGCTGGCGCTGGTGCCTG 1318
| |||| |.|||||| ||| ||| .||.|||||||||||||||||||||||||..
Sbjct 31 A--------GCAACGACCCCCGGATCATCACATG-----GAGAATTGAGAAAATGGAGCTGGCGCTGGTGCCCC 91
Query 1319 TGAGCGCCCACGGCAACTTCTATGAGGGGGACTGCTACGTCATCCTCTCGACCCGGAGAGTGGCCAGTCTCCTA 1392
||||.||.||||||||||||||.|||||.|||||||||.||.|||||||||||||||||||||.|||.||.||.
Sbjct 92 TGAGTGCTCACGGCAACTTCTACGAGGGAGACTGCTACATCGTCCTCTCGACCCGGAGAGTGGGCAGCCTTCTC 165
Query 1393 TCCCAGGACATCCACTTCTGGATCGGGAAGGACTCCTCCCAGGATGAGCAAAGCTGCGCAGCCATATATACCAC 1466
||||||.||||||||||.||||||||||||||||||||||||||.|||||.||||||||.|||||.||||||||
Sbjct 166 TCCCAGAACATCCACTTTTGGATCGGGAAGGACTCCTCCCAGGACGAGCAGAGCTGCGCGGCCATCTATACCAC 239
Query 1467 ACAGCTGGACGACTACCTGGGAGGCAGCCCTGTGCAGCACCGAGAGGTCCAGTACCATGAGTCAGACACTTTCC 1540
|||||||||.||||||||||||||||||||.|||||||||||.||||||||||||||.|||||.|||||.||||
Sbjct 240 ACAGCTGGATGACTACCTGGGAGGCAGCCCGGTGCAGCACCGTGAGGTCCAGTACCACGAGTCCGACACCTTCC 313
Query 1541 GTGGCTACTTCAAGCAGGGCATCATCTACAAGCAGGGGGGTGTCGCCTCTGGGATGAAGCACGTGGAGACCAAT 1614
||||||||||||||||||||||||||||.||..||||||||||.|||||||||||||||||||||||||||||.
Sbjct 314 GTGGCTACTTCAAGCAGGGCATCATCTATAAAAAGGGGGGTGTGGCCTCTGGGATGAAGCACGTGGAGACCAAC 387
Query 1615 ACCTACGACGTGAAGCGGCTGCTACATGTGAAAGGGAAAAGAAACATC----------AGG------------- 1665
|||||.||.||||||.||||||||||.||.||.||||||||||||||| |||
Sbjct 388 ACCTATGATGTGAAGAGGCTGCTACACGTAAAGGGGAAAAGAAACATCCAAGCCACGGAGGTGAGTCTCACACG 461
Query 1666 ---------------------GCTACCG---------------------------------------------- 1672
|||.|||
Sbjct 462 TGAGTGTCCTGGGTGCCCGGTGCTCCCGCCCTGGCACCTAAGACTGCCCCGAACCGCTCTGACTGCTCACACGC 535
Query 1673 AGGTGGAAATGAGCTGGGACAGTTTCAACCGAGGTGATGTCTTCTTGCTGGACCTTGGGAAAGTCATCATCCAA 1746
||||||||||||||||||||||.||.||||||||.|||||||||.|||||||||||||||..|||||||||||.
Sbjct 536 AGGTGGAAATGAGCTGGGACAGCTTTAACCGAGGCGATGTCTTCCTGCTGGACCTTGGGATGGTCATCATCCAG 609
Query 1747 TGGAATGGCCCAGAGAGCAACAGTGGGGAGCGCCTGAAGGCTATGCTTCTGGCAAAGGATATTCGAGACAGGGA 1820
|||||||||||.|||||||||||||||||.||.||.|||||||||||||||||||||||.|||||.||||||||
Sbjct 610 TGGAATGGCCCGGAGAGCAACAGTGGGGAACGTCTCAAGGCTATGCTTCTGGCAAAGGACATTCGGGACAGGGA 683
Query 1821 GCGAGGGGGCCGTGCTGAAATAGGAGTGATCGAGGGAGACAAGGAGGCAGCCAGCCCAGAGCTGATGAAGGTCC 1894
|||||||||||||||||||||.||.|||||.|||||||||||||||||.||||||||||.||||||||..||||
Sbjct 684 GCGAGGGGGCCGTGCTGAAATTGGGGTGATTGAGGGAGACAAGGAGGCGGCCAGCCCAGGGCTGATGACAGTCC 757
Query 1895 TTCAGGACACCCTTGGCCGACGCTCCATTATCAAGCCTACAGTCCCTGATGAGATCATAGATCAGAAGCAGAAA 1968
|.|||||.||||||||.|||||||||||.||.||||||.||||..|||||||||||||.||.||..|.||||||
Sbjct 758 TCCAGGATACCCTTGGTCGACGCTCCATGATAAAGCCTGCAGTTTCTGATGAGATCATGGACCAACAACAGAAA 831
Query 1969 TCAACTATCATGTTGTATCATATCTCAGATTCAGCTGGGCAGCTGGCAGTCACAGAGGTAGCAACAAGGCCTCT 2042
||||.|||||||||.||||||.||||.||..||||||||||||||.|||||||||||||.|||||||||||.||
Sbjct 832 TCAAGTATCATGTTATATCATGTCTCCGACACAGCTGGGCAGCTGTCAGTCACAGAGGTGGCAACAAGGCCCCT 905
Query 2043 GGTCCAGGACTTACTGAACCATGATGACTGCTACATCCTGGACCAAAGTGGAACCAAAATCTACGTGTGGAAAG 2116
||||||||||.||||||||||.|||||||||||||||||||||||||||||.|||||.||||||||||||||||
Sbjct 906 GGTCCAGGACCTACTGAACCACGATGACTGCTACATCCTGGACCAAAGTGGCACCAAGATCTACGTGTGGAAAG 979
Query 2117 GAAAAGGAGCCACAAAGGCTGAAAAACAGGCAGCCATGTCTAAAGCGCTGGGCTTCATCAAGATGAAGAGCTAC 2190
|.|||||||||||.||||.|||.||||||||.||||||||.|||||.||||..|||||||||||||||.|.|||
Sbjct 980 GCAAAGGAGCCACCAAGGTTGAGAAACAGGCGGCCATGTCCAAAGCCCTGGATTTCATCAAGATGAAGGGATAC 1053
Query 2191 CCCAGCAGCACCAATGTGGAGACCGTCAACGATGGTGCTGAGTCGGCCATGTTCAAGCAGCTGTTCCAGAAGTG 2264
||||||||||||||.||||||||||||||||||||.||.|||||||||||||||||.|||.||||||||||.||
Sbjct 1054 CCCAGCAGCACCAACGTGGAGACCGTCAACGATGGCGCAGAGTCGGCCATGTTCAAACAGTTGTTCCAGAAATG 1127
Query 2265 GTCAGTAAAGGACCAGACCATGGGCCTGGGGAAAACGTTCAGCATTGGTAAAATTGCTAAAGTTTTCCAGGATA 2338
|||.||.|||||||||||||.||||.|||||||||..|||||||.|||||||||.||||||.|.||||||||.|
Sbjct 1128 GTCGGTGAAGGACCAGACCACGGGCTTGGGGAAAATATTCAGCACTGGTAAAATCGCTAAAATCTTCCAGGACA 1201
Query 2339 AATTTGATGTGACTCTGCTACACACCAAGCCAGAGGTAGCTGCCCAGGAAAGAATGGTCGATGATGGCAACGGA 2412
|.||.||||||.||||||||||||||||||||||.||.|||||.|||||.||||||||.||.||.|||||.||.
Sbjct 1202 AGTTCGATGTGTCTCTGCTACACACCAAGCCAGAAGTGGCTGCACAGGAGAGAATGGTGGACGACGGCAAAGGC 1275
Query 2413 AAAGTTGAGGTCTGGAGAATTGAGAACCTGGAGCTGGTCCCTGTGGAGTATCAATGGTATGGCTTCTTTTATGG 2486
.|.||||||||||||||||||||||||||||||||||||||.|||||.||.||.|||.||||||||||.||.||
Sbjct 1276 CAGGTTGAGGTCTGGAGAATTGAGAACCTGGAGCTGGTCCCCGTGGAATACCAGTGGCATGGCTTCTTCTACGG 1349
Query 2487 GGGAGACTGTTATCTGGTCCTCTACACATACGAGGTAAATGGGAAGCCACATCACATCTTGTACATCTGGCAGG 2560
|||||||||.||||||||.||||||||.|||||.||.||.|||||.||.|||.|||||||||||||||||||||
Sbjct 1350 GGGAGACTGCTATCTGGTTCTCTACACGTACGATGTGAACGGGAAACCCCATTACATCTTGTACATCTGGCAGG 1423
Query 2561 GCCGCCACGCCTCACAGGATGAGCTGGCAGCCTCAGCATACCAGGCAGTGGAGGTGGATCGGCAGTTTGATGGG 2634
||||||||||.||.|.|||||||||||||||||||||.||.|.|||||||||||||||||.||||||||||||.
Sbjct 1424 GCCGCCACGCATCCCGGGATGAGCTGGCAGCCTCAGCCTATCGGGCAGTGGAGGTGGATCAGCAGTTTGATGGA 1497
Query 2635 GCTGCTGTGCAGGTTCGAGTCAGGATGGGAACGGAGCCACGCCACTTCATGGCCATCTTCAAAGGGAAGCTAGT 2708
||..||||||||||.||.||.||.|||||.|.|||||||||||||||||||||||||||||||||.|||||.||
Sbjct 1498 GCCCCTGTGCAGGTCCGGGTTAGCATGGGGAAGGAGCCACGCCACTTCATGGCCATCTTCAAAGGAAAGCTGGT 1571
Query 2709 TATCTTTGAGGGTGGGACTTCCAGGAAGGGAAATGCCGAGCCTGACCCTCCAGTAAGACTCTTCCAAATTCATG 2782
|||||..|||||.||||||||||||||||||||.|..|||||.||||||||||||||.||||||||.||.||.|
Sbjct 1572 TATCTACGAGGGCGGGACTTCCAGGAAGGGAAACGAGGAGCCGGACCCTCCAGTAAGGCTCTTCCAGATCCACG 1645
Query 2783 GAAATGACAAATCTAACACCAAAGCAGTGGAAGTTCCAGCCTTTGCCTCCTCCCTAAACTCCAATGATGTCTTT 2856
|.||.||||||||.|||||||||||||||||.||..|.||||.|||.|||||.||.||||||||.||.||||||
Sbjct 1646 GGAACGACAAATCCAACACCAAAGCAGTGGAGGTCTCGGCCTCTGCTTCCTCGCTCAACTCCAACGACGTCTTT 1719
Query 2857 CTGCTGCGAACTCAGGCAGAGCACTACCTGTGGTATGGCAAGG----TAG---------------GATGGCTGG 2911
||||||||.||||||||||||||||||||||||||.||||||| ||| |||||||..
Sbjct 1720 CTGCTGCGGACTCAGGCAGAGCACTACCTGTGGTACGGCAAGGGGTCTAGTGGGGACGAGCGGGCGATGGCTAA 1793
Query 2912 GCCCCGGGTCAGACC---------------------------------AGCCCCTCGGAGCCCAGACCTGCACT 2952
|...|.|||| |||| ||..|| .|||||| ||||| |.|
Sbjct 1794 GGAGCTGGTC-GACCTTCTCTGTGATGGCAATGCGGACACTGTGGCTGAGGGCC-AGGAGCC---ACCTG-AGT 1861
Query 2953 CC-----CCTCCT---------------------------------CCTGTCAGCAAGGTCAAA----GGACCT 2984
.| |||.|| .||| ||||||| ||| ||||.|
Sbjct 1862 TCTGGGACCTTCTGGGAGGAAAAACAGCCTACGCTAATGACAAAAGGCTG-CAGCAAG---AAACCCTGGACGT 1931
Query 2985 AGAG---------------------------------------------------------------------- 2988
..||
Sbjct 1932 CCAGGTCCGGCTCTTTGAGTGTTCCAATAAGACTGGCCGCTTCCTTGTTACGGAGGTCACGGACTTCACCCAGG 2005
Query 2989 -------------------------------------------------------------------------- 2988
Sbjct 2006 AGGACCTGAGCCCAGGTGATGTGATGCTTCTGGACACCTGGGACCAGGTGTTCTTGTGGATAGGAGCGGAGGCC 2079
Query 2989 -------------------------------------------------------------------------- 2988
Sbjct 2080 AATGCCACGGAGAAGAAGGGGGCCCTCTCGACGGCTCAGGAGTACCTGGTCACACATCCTAGTGGCCGAGACCC 2153
Query 2989 -------------------------------------------------------------------------- 2988
Sbjct 2154 CGACACACCGATTCTGATCATCAAACAGGGCTTTGAGCCCCCCACCTTCACAGGCTGGTTCCTGGCATGGGACC 2227
Query 2989 -------------------------------------------------------------------------- 2988
Sbjct 2228 CTCACATTTGGAGCGAAGGAAAATCATATGAGCAGCTAAAGAACGAGCTGGGAGATGCAACTGCCATTGTGCGA 2301
Query 2989 -------------------------------------------------------------------------- 2988
Sbjct 2302 ATCACCGCTGACATGAAGAACGCAACACTTTACCTGAATCCTAGTGACGGTGAGCCAAAGTACTACCCGGTGGA 2375
Query 2989 -------------------------------------------------------------------------- 2988
Sbjct 2376 AGTTCTGCTGAAAGGTCAGAACCAGGAGCTGCCTGAGGATGTGGACCCCGCCAAAAAGGAGAACTACCTCTCGG 2449
Query 2989 -------------------------------------------------------------------------- 2988
Sbjct 2450 AACAAGACTTTGTATCTGTGTTTGGCATCACGAGAGGGCAGTTCACTGCTCTGCCTGGCTGGAAACAGCTCCAG 2523
Query 2989 ------------------------ 2988
Sbjct 2524 CTGAAGAAAGAAAGGGGCCTTTTC 2547
