Nucleotide Global Alignment

Description

Query:
TRCN0000465661
Subject:
XM_017319143.1
Aligned Length:
1703
Identities:
1360
Gaps:
196

Alignment

Query    1  ATGGGCGCCGCCGCCTCCAGGAGGAGGGCGCTGAGGAGCGAGGCCATGTCCTCGGTGGCGGCCAAAGTGCGAGC  74
            |||||.||||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||..||||
Sbjct    1  ATGGGTGCCGCCGCCTCCAGGAGGAGGGCGCTGAGGAGCGAGGCCATGTCCTCGGTAGCGGCCAAAGTAAGAGC  74

Query   75  AGCCCGAGCGTTTGGAGAGTACCTGTCCCAGAGTCACCCTGAGAACCGCAACGGCGCAGATCACCTGCTGGCTG  148
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||||.|||||||||||||
Sbjct   75  AGCCCGAGCGTTTGGAGAGTACCTGTCCCAGAGTCACCCTGAGAACCGCAACGGTGCAGACCACCTGCTGGCTG  148

Query  149  ATGCCTACTCTGGCCACGACGGGTCCCCCGAGATGCAGCCGGCCCCCCAGAACAAGCGCCGCCTGTCCCTCGTC  222
            |.||||||||||||||||||||||||||.||||||||.||.||.||||||||||||||||||||.|||||||||
Sbjct  149  ACGCCTACTCTGGCCACGACGGGTCCCCAGAGATGCAACCTGCACCCCAGAACAAGCGCCGCCTCTCCCTCGTC  222

Query  223  TCCAACGGCTGCTACGAGGGCAGCCTCTCAGAGGAGCC---CAGCATTAGGAAGCCCGCAGGC----GAGGGCC  289
            |||||.|||.|.||.|||||||||.|||||||.|||.|   ||||   .|||||||    |||    |||||||
Sbjct  223  TCCAATGGCCGATATGAGGGCAGCATCTCAGATGAGGCAGTCAGC---GGGAAGCC----GGCTATAGAGGGCC  289

Query  290  CTCAGCCTCGAGTGTACACCATCTCTGGGGAGCCTGCCCTGCTGCCCAGCCCTGAGGCGGAGGCCATTGAGCTG  363
            |.|||||.|..|||||||||||||||.|.|||||.||||||||.||..||.||||.||.||.|||||||||||.
Sbjct  290  CCCAGCCCCACGTGTACACCATCTCTAGAGAGCCCGCCCTGCTACCTGGCTCTGAAGCTGAAGCCATTGAGCTA  363

Query  364  GCGGTGGTGAAGGGG------CGGCGGCAGCGGCACCCTCACCATCACAGCCAGCCCCTGCGCGCCAGCCCTGG  431
            ||.|||||.||.|||      |.||||.|.||||||||||||||.|||||||||||||||||.||||||||.||
Sbjct  364  GCAGTGGTAAAAGGGAGGAGACAGCGGGAACGGCACCCTCACCACCACAGCCAGCCCCTGCGTGCCAGCCCAGG  437

Query  432  TGGCAGCCGGGAGGACGTCAGCAGGCCCTGCCAGAGCTGGGCGGGCAGCCGCCAGGGCTCCAAGGAGTGCCCCG  505
            ..||||||||||||||.||||||||||||||||.||||||||.||.|||||||||||||||||.||||||||.|
Sbjct  438  CAGCAGCCGGGAGGACATCAGCAGGCCCTGCCAAAGCTGGGCAGGAAGCCGCCAGGGCTCCAAAGAGTGCCCAG  511

Query  506  GATGTGCCCAGCTGGCTCCTGGCCCCACCCCTCGGGCCTTTGGGCTGGACCAGCCACCTCTGCCTGAGACCTCC  579
            |||||||||||||||..|||||.|||.|..|||||||||||||||||||.|||||||||||.|||||| .||||
Sbjct  512  GATGTGCCCAGCTGGTCCCTGGTCCCTCTTCTCGGGCCTTTGGGCTGGAGCAGCCACCTCTACCTGAG-GCTCC  584

Query  580  -GGTCGCCGCAAGAAGCTGGAGAGGATGTACAGCGTTGACCGTGTGTCTGACGACATCCCTATTCGTACCTGGT  652
             ||.||||.||||||||||||.||||||||.||||||||..|.||||||||.||..||||.||.||||||||||
Sbjct  585  TGGCCGCCACAAGAAGCTGGAAAGGATGTATAGCGTTGATGGAGTGTCTGATGATGTCCCCATCCGTACCTGGT  658

Query  653  TCCCCAAGGAAAATCTTTTCAGCTTCCAGACAGCAACCACAACTATGCAAGCGAACTTCCGCAAACACCTGCGC  726
            |||||||||||||.|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||
Sbjct  659  TCCCCAAGGAAAACCTTTTCAGCTTCCAGACGGCAACCACAACTATGCAAGCGAACTTCCGCAAACACCTGCGC  732

Query  727  ATGGTCGGCAGCCGGAGGGTGAAGGCCCAGACGTTCGCTGAGCGGCGCGAGCGGAGCTTCAGCCGGTCCTGGAG  800
            |||||.|||||.|||.||||||||||||||||||||||||||||.|||||.|||||||||||||||||||||||
Sbjct  733  ATGGTTGGCAGTCGGCGGGTGAAGGCCCAGACGTTCGCTGAGCGTCGCGAACGGAGCTTCAGCCGGTCCTGGAG  806

Query  801  CGACCCCACCCCCATGAAAGCCGACACTTCCCACGACTCCCGAGACAGCAGTGACCTGCAGAGCTCCCACTGCA  874
            ||||||||||||.||||||||||||||||||||||||||||||||||||||||||||.||||||||.|||||||
Sbjct  807  CGACCCCACCCCTATGAAAGCCGACACTTCCCACGACTCCCGAGACAGCAGTGACCTACAGAGCTCACACTGCA  880

Query  875  CGCTGGACGAGGCCTTCGAGGACCTGGACTGGGACACTGAGAAGGGCCTGGAGGCTGTGGCCTGCGACACCGAA  948
            |.|||||.|||||.|..||||||||||||||||||||.|||||.||.||||||||..||||||||.|||||||.
Sbjct  881  CCCTGGATGAGGCTTGTGAGGACCTGGACTGGGACACAGAGAAAGGTCTGGAGGCCATGGCCTGCAACACCGAG  954

Query  949  GGCTTCGTGCCACCAAAGGTCATGCTCATTTCCTCCAAGGTGCCCAAGGCTGAGTACATCCCCACTATCATCCG  1022
            ||||||.|||||||.||||||||||||||.||||||||||||||.|||||.|||||.|||||.|||||||||||
Sbjct  955  GGCTTCTTGCCACCCAAGGTCATGCTCATCTCCTCCAAGGTGCCAAAGGCCGAGTATATCCCTACTATCATCCG  1028

Query 1023  CCGGGATGACCCCTCCATCATCCCCATCCTCTACGACCATGAGCACGCAACCTTCGAGGACATCCTTGAGGAGA  1096
            |.|.||||||||.||||||||.|||||||||||||||||.|||||.||||||||||||||||||||.|||||.|
Sbjct 1029  CAGAGATGACCCGTCCATCATTCCCATCCTCTACGACCACGAGCATGCAACCTTCGAGGACATCCTGGAGGAAA  1102

Query 1097  TAGAGAGGAAGCTGAACGTCTACCACAAGGGAGCCAAGATCTGGAAAATGCTGATTTTCTGC------------  1158
            ||||||.|||..|||||.||||.||||||||.||||||||||||||.|||||||||||||||            
Sbjct 1103  TAGAGAAGAAATTGAACATCTATCACAAGGGGGCCAAGATCTGGAAGATGCTGATTTTCTGCCAGGTAGAAGCA  1176

Query 1159  --------------------------------------------------------------------------  1158
                                                                                      
Sbjct 1177  GCCTTTCCTTTCCTCCCCAGGAAAAGAGGGCAGTGTGGTATGGGTAGGGCCCCAAGATCTTACTCAGTGTGGGC  1250

Query 1159  --------------------------------------------------------------------------  1158
                                                                                      
Sbjct 1251  GTGTCCATGTGGTACATTTGTGGACGACATGCACACGCCTCATCCTAGCCTCCCCCTAGCACTCCTGAGGCCTG  1324

Query 1159  --------------CAGGGAGGTCCTGGACACCTCTATCTCCTCAAGAACAAGGTGGCCACCTTTGCCAAAGTG  1218
                          |||||.||.|||||||||||.|||.|.|||||||||||||||||||||||||||||||||
Sbjct 1325  ACCGTGACCTCTTTCAGGGCGGCCCTGGACACCTTTATTTGCTCAAGAACAAGGTGGCCACCTTTGCCAAAGTG  1398

Query 1219  GAGAAGGAAGAGGACATGATTCACTTCTGGAAGCGGCTGAGCCGCCTGATGAGCAAAGTGAACCCAGAGCCGAA  1292
            ||||||||||||||||||||.||||||||||||.||||||||||||||||||||||.||||||||.||||||||
Sbjct 1399  GAGAAGGAAGAGGACATGATCCACTTCTGGAAGAGGCTGAGCCGCCTGATGAGCAAGGTGAACCCCGAGCCGAA  1472

Query 1293  CGTCATCCACATCATGGGCTGCTACATTCTGGGGAACCCCAATGGAGAGAAGCTGTTCCAGAACCTCAGGACCC  1366
            .||||||||||||||||||||||||||||||||||||||.||.||.||||||||.|||||||||||||||||||
Sbjct 1473  TGTCATCCACATCATGGGCTGCTACATTCTGGGGAACCCTAACGGGGAGAAGCTATTCCAGAACCTCAGGACCC  1546

Query 1367  TCATGACTCCTTATAGGGTCACCTTCGAGTCACCCCTGGAGCTCTCAGCCCAAGGGAAGCAGATGATCGAGACG  1440
            |||||||.|||||.|.|||.|||||.|||||.||.||.|||||.||.||||||||||||||||||||.|||||.
Sbjct 1547  TCATGACCCCTTACAAGGTTACCTTTGAGTCGCCTCTCGAGCTGTCTGCCCAAGGGAAGCAGATGATTGAGACC  1620

Query 1441  TACTTTGACTTCCGGTTGTATCGCCTGTGGAAGAGCCGCCAGCACTCGAAGCTGCTGGACTTTGACGACGTCCT  1514
            |||||||||||||||.||||.||||||||||||||||||||||||||.|||||||||||||||||.||||||||
Sbjct 1621  TACTTTGACTTCCGGCTGTACCGCCTGTGGAAGAGCCGCCAGCACTCAAAGCTGCTGGACTTTGATGACGTCCT  1694

Query 1515  G  1515
            |
Sbjct 1695  G  1695

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.