Nucleotide Global Alignment

Description

• Query: TRCN0000465719
• Subject: NM_001346053.1
• Aligned Length: 1439
• Identities: 849
• Gaps: 529

Alignment

Query    1  ATGGCGCAAAGGTACGATGAGCTGCCCCATTACGGCGGGATGGACGGAGTAGGGGTTCCCGCTTCCATGTACGG  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  AGACCCTCACGCGCCGCGGCCGATCCCCCCGGTTCACCACCTGAACCACGGGCCGCCGCTCCACGCCACACAGC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  ACTACGGCGCGCACGCCCCGCACCCCAATGTCATGCCGGCCAGTATGGGATCCGCTGTCAACGACGCCTTGAAG  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  CGGGACAAGGACGCGATCTATGGGCACCCGTTGTTTCCTCTGTTAGCTCTGGTCTTTGAGAAGTGCGAGCTGGC  296
                                                      .|.||||||||.||||||||||||||||||||
Sbjct    1  ------------------------------------------ATGGCTCTGGTTTTTGAGAAGTGCGAGCTGGC  32

Query  297  GACCTGCACTCCCCGGGAACCTGGAGTGGCTGGCGGAGACGTCTGCTCCTCCGACTCCTTCAACGAGGACATCG  370
            |||||||||||||||||||||.||||||||.||||||||||||||.|||||.||||||||||||||||||||||
Sbjct   33  GACCTGCACTCCCCGGGAACCCGGAGTGGCCGGCGGAGACGTCTGTTCCTCTGACTCCTTCAACGAGGACATCG  106

Query  371  CGGTCTTCGCCAAGCAGGTTCGCGCCGAAAAGCCACTTTTTTCCTCAAATCCAGAGCTGGACAATTTGATGATA  444
            ||||||||||||||||||||||||||||||||||.||||||||||||||.|||||||||||.||||||||||||
Sbjct  107  CGGTCTTCGCCAAGCAGGTTCGCGCCGAAAAGCCTCTTTTTTCCTCAAACCCAGAGCTGGATAATTTGATGATA  180

Query  445  CAAGCAATACAAGTACTAAGGTTTCATCTTTTGGAGTTAGAAAAGGTCCACGAACTGTGCGATAACTTCTGCCA  518
            ||||||||.|||||||||||||||||||||.|||||||||||||||||||||||||.||.||||||||||||||
Sbjct  181  CAAGCAATTCAAGTACTAAGGTTTCATCTTCTGGAGTTAGAAAAGGTCCACGAACTATGTGATAACTTCTGCCA  254

Query  519  CCGATACATTAGCTGTTTGAAGGGGAAAATGCCCATCGACCTCGTCATTGATGAAAGAGACGGCAGCTCCAAGT  592
            |||.||||||||||||||||||||.|||||||||||.||||||||.||||||||.|||||.||.||||||||||
Sbjct  255  CCGGTACATTAGCTGTTTGAAGGGAAAAATGCCCATTGACCTCGTGATTGATGAGAGAGATGGAAGCTCCAAGT  328

Query  593  CAGATCATGAAGAACTTTCAGGCTCCTCCACAAATCTCGCTGACCATAACCCTTCTTCTTGGCGAGACCACGAT  666
            ||||||||||||||||||||||||||||||||||||||||.|||||.||||||||.||.|||||||||||||||
Sbjct  329  CAGATCATGAAGAACTTTCAGGCTCCTCCACAAATCTCGCCGACCACAACCCTTCATCCTGGCGAGACCACGAT  402

Query  667  GATGCAACCTCAACCCACTCAGCAGGCACCCCAGGGCCCTCCAGTGGGGGCCATGCTTCCCAGAGCGGAGACAA  740
            ||.|||||||||||.|||||.||||||||||||||.|||||||||||||||||||||||||||||.||||||||
Sbjct  403  GACGCAACCTCAACGCACTCCGCAGGCACCCCAGGACCCTCCAGTGGGGGCCATGCTTCCCAGAGTGGAGACAA  476

Query  741  CAGCAGTGAGCAAGGGGATGGTTTAGACAACAGTGTAGCTTCACCTGGTACAGGTGACGATGATGATCCGGATA  814
            |||||||||||||||.|||||.|||||||||||.||||||||||||||.||||||||.||.||.|||||.||.|
Sbjct  477  CAGCAGTGAGCAAGGCGATGGGTTAGACAACAGCGTAGCTTCACCTGGCACAGGTGATGACGACGATCCAGACA  550

Query  815  AGGACAAAAAACGCCAGAAGAAAAGAGGCATTTTCCCCAAAGTAGCAACAAATATCATGAGAGCATGGCTCTTC  888
            |||||||||||||||||||||||||||||||.|||||||||||.||.|||||||||||||||||.|||||||||
Sbjct  551  AGGACAAAAAACGCCAGAAGAAAAGAGGCATATTCCCCAAAGTCGCGACAAATATCATGAGAGCGTGGCTCTTC  624

Query  889  CAGCATCTCACACATCCGTACCCTTCCGAAGAGCAGAAGAAACAGTTAGCGCAAGACACAGGACTTACAATTCT  962
            ||||||||||||||.|||||||||||.|||||.||||||||||||||||||||||||||.|||||.||||||||
Sbjct  625  CAGCATCTCACACACCCGTACCCTTCAGAAGAACAGAAGAAACAGTTAGCGCAAGACACGGGACTGACAATTCT  698

Query  963  CCAAGTAAACAACTGGTTTATTAATGCCAGAAGAAGAATAGTACAGCCCATGATTGACCAGTCAAATCGAG---  1033
            .|||||.||||||||||||||.||||||||||||||||||||.||||||||||||||||||||||||||||   
Sbjct  699  GCAAGTGAACAACTGGTTTATCAATGCCAGAAGAAGAATAGTGCAGCCCATGATTGACCAGTCAAATCGAGCAG  772

Query 1034  ------------------CAGTGAGCCAAGGAGCAGCATATAGTCCAGAGGGTCAGCCCATGGGGAGCTTTGTG  1089
                              |||||||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct  773  GTTTTCTTCTTGATCCTTCAGTGAGCCAAGGAGCAGCGTATAGTCCAGAGGGTCAGCCCATGGGGAGCTTTGTG  846

Query 1090  TTGGATGGTCAGCAACACATGGGGATCCGGCCTGCAGGTTTGCAGA-GCATGCCAGGGGACTACGTTTCTCAGG  1162
            |||||||||||||||||||||||||||||||||||||       || .||||  ||.|||              
Sbjct  847  TTGGATGGTCAGCAACACATGGGGATCCGGCCTGCAG-------GACCCATG--AGTGGA--------------  897

Query 1163  GTGGTCCTATGGGAATGAGTATGGCACA-------GCCAAGTTACACTCCTCCCCAGATGACCCCACACCCTAC  1229
                    |||||.||||.||||| .||       ||  |||..||||       |.|||              
Sbjct  898  --------ATGGGCATGAATATGG-GCATGGATGGGC--AGTGGCACT-------ATATG--------------  939

Query 1230  TCAATTAAGACATGGACCCCCAATGCATTCATATTTGCCAAGCCATCCCCACCACCCAGCCATGATGATGCACG  1303
                                                                                      
Sbjct  940  --------------------------------------------------------------------------  939

Query 1304  GAGGACCCCCTACCCACCCTGGAATGACTATGTCAGCACAGAGCCCCACAATGTTAAATTCTGTAGATCCCAAT  1377
                                                                                      
Sbjct  940  --------------------------------------------------------------------------  939

Query 1378  GTTGGCGGACAGGTTATGGACATTCATGCCCAA  1410
                                             
Sbjct  940  ---------------------------------  939