Nucleotide Global Alignment
Description
- Query:
- TRCN0000465722
- Subject:
- XM_011249725.2
- Aligned Length:
- 4294
- Identities:
- 1806
- Gaps:
- 2078
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGACTAATCCTTGGGAAGAGAAAGTCTGCAAAATGGCCCAGACGAGTCTGCTGCAAGGGAAACAGTTTTACTG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 TCGAGAATGGGTTTTCCACAAACTTCAGCACTGCCTCCAGGAGAAATGGAGCTGCTGTTCGGGTCCAGCCACTG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 CACAGTCCCTCGTCGGCAACGCTGGGAATAATGCTAGTGCCATCTCTGGAAAGGGGGCCTCCTGGGGCGTGTTG 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CTGGTAGGAGGGCCTGGCAGTGGGAAGACGGCCCTGTGCACTGAGCTCCTGTGGCCAAGTTCGCCCGCCAGCCT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GCAGAGAGGTCTGCATCGCCAGGCTTTGGCTTTCCACTTCTGCAAAGCCCAGGACTCAGACACTTTGTGTGTTG 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GAGGGTTTATCAGAGGTCTGGTAGCCCAGATCTGCCAAAGTGGACTCCTCCAAGGTTATGAGGACAAGCTAAGA 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GATCCAGCCGTCCAAAGTCTCCTCGAGCCTGGAGAGTGTGAGAGGAACCCAGCGGAAGCATTTAAAAGGTGTGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GCTGCTCCCACTCCTGGGGATGAAGCCACCCCCGCAGAGCCTCTACCTGTTGGTTGACTCCGTGGACGAAGGCT 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCAATGTGGTGGAAGGGGAGCAGACATCACCCAGCCTCTCGGGGACTGTGGCAGAGCTCTTGGCTGGTCACCAC 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 GAGTTCTTTCCCCCATGGCTCCTGCTTCTCTGCTCTGCCCGAAAGCAGAGCAGAGCTGTCACTAAAATGTTCAG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 TGGGTTCCGGAAGATCAGTTTGGATGACCTGCGGAAGGCATATATCGTTAAGGATGTTCAGCAGTACATCCTCC 814
Query 1 -------------------------------------------------------------------------- 0
Sbjct 815 ACCGCCTGGATCAAGAGGAGGCACTGCGGCAGCACCTCACCAAGGAGACGGCTGAGACGCTGAACCAGCTGCAC 888
Query 1 -------------------------------------------------------------------------- 0
Sbjct 889 ATCAAGAGCAGTGGGTGCTTCCTGTATCTGGAGCGCGTGCTGGATGGCGTCGTAGAGAACTTCATCATGCTTCG 962
Query 1 -------------------------------------------------------------------------- 0
Sbjct 963 GGAGATCCGGGACATCCCGGGAACTCTGAATGGTCTCTACCTCTGGCTCTGCCAGAGACTTTTTGTCCGAAAAC 1036
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1037 AGTTTGCCAAAGTTCAGCCCATTCTGAACGTGATCCTGGCAGCCTGCCGGCCCCTGACCATGACAGAATTATAC 1110
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1111 CATGCTGTGTGGACCAAAAATATGTCTCTAACCTTGGAAGACTTTCAGCGCAAGCTAGACGTCCTCTCCAAGCT 1184
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1185 CTTGGTGGATGGCTTGGGCAGCACCAAGATCCTGTTTCACCACAGCTTTGCCGAGTGGCTCTTGGATGTGAAGC 1258
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1259 ACTGCACCCAGAAATACCTGTGTAACGCTGCAGAAGGACACAGGATGCTGGCCATGAGCTACACCTGCCAGGCC 1332
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1333 CGGAACCTGACCCCGCTGGAAGCACAAGAATTTGCCTTGCACTTGATTAATTCAAACTTGCAGCTGGAGCCAGC 1406
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1407 CGAACTGGCTCTGTGGATGATATGGAATGGTACCCCAGTCAAAGACTCCCTGTCCACCTTGATACCCAAGGAGC 1480
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1481 AAGAGGTCCTGCAGCTGCTGATCCGAGCTGGTGCTCATGTCAACAGCGAAGATGATCACACCTCCTGCATTGTC 1554
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1555 CGGCAAGCCCTGGAGAGAGAGGACTCCATTCGGACTTTACTGGATAACGGAGCCTCTGTCAATCAGTGTGATTC 1628
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1629 CAATGGGAGAACTCTGCTGGCCAATGCCGCATACAGTGGCAGTCTGGATGTTGTGAATTTGCTTGTCTCCAGGG 1702
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1703 GAGCCGACTTAGAGATCGAAGACGCCCATGGGCACACGCCACTCACTCTAGCTGCTAGACAAGGGCACACAAAG 1776
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1777 GTGGTTAACTGTCTAATTGGGTGTGGAGCCAACATCAATCATACAGATCAGGACGGTTGGACAGCCCTGAGGTC 1850
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1851 TGCTGCTTGGGGCGGCCACACCGAGGTGGTGTCGGCCCTGCTTTACGCTGGCGTAAAGGTAGACTGTGCAGATG 1924
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1925 CAGACAGCCGAACTGCTCTGCGTGCAGCAGCCTGGGGTGGCCACGAGGACATTGTCCTGAACCTGCTACAACAT 1998
Query 1 ------------------------------------------------------------ATGGGACATAGAGA 14
|||||.||.|||||
Sbjct 1999 GGTGCCGAGGTCAACAAAGCGGACAACGAAGGGAGGACTGCACTCATAGCTGCAGCATATATGGGCCACAGAGA 2072
Query 15 GATTGTGGAACACCTACTGGACCATGGAGCAGAAGTAAATCATGAGGATGTTGATGGCAGGACTGCACTCTCTG 88
|||.||.||.|||||.|||||||||||.|||||.|||||.||.|||||.||.||.||||||||.||.|||||.|
Sbjct 2073 GATCGTAGAGCACCTGCTGGACCATGGCGCAGAGGTAAACCACGAGGACGTGGACGGCAGGACAGCCCTCTCCG 2146
Query 89 TAGCTGCACTTTGTGTGCCTGCAAGTAAAGGGCACGCATCAGTTGTTAGCCTTTTAATTGATCGAGGTGCTGAA 162
|.||.||.||.||||||||||||||.|||||||||||.|||||.||.|||||..|.|||||||||||.|||||.
Sbjct 2147 TGGCCGCGCTCTGTGTGCCTGCAAGCAAAGGGCACGCGTCAGTCGTGAGCCTCCTGATTGATCGAGGGGCTGAG 2220
Query 163 GTAGATCATTGTGATAAAGATGGCATGACTCCACTGCTGGTAGCTGCCTATGAAGGACATGTTGATGTGGTTGA 236
||||||||.|||||.||.|||||||||||.||.||||||||.||.|||||.|||||.|||||.||||||||.||
Sbjct 2221 GTAGATCACTGTGACAAGGATGGCATGACCCCCCTGCTGGTGGCCGCCTACGAAGGTCATGTGGATGTGGTGGA 2294
Query 237 CTTGCTTCTAGAAGGGGGAGCAGATGTAGATCACACAGATAACAATGGCCGTACACCCCTCTTAGCAGCAGCGT 310
|.||||.||||||||.|||||||||||.||||||||.||||||||.||.||.||.|||||..|.||.|||||.|
Sbjct 2295 CCTGCTGCTAGAAGGAGGAGCAGATGTCGATCACACCGATAACAACGGGCGGACGCCCCTTCTGGCTGCAGCTT 2368
Query 311 CTATGGGTCATGCATCAGTTGTAAATACACTTTTGTTTTGGGGTGCAGCTGTGGATAGTATTGATAGTGAAGGT 384
|.|||||.|||||.||.||.||.||.||.|||.||||.|||||.|||||.|||||.||.||.||.||.|||||.
Sbjct 2369 CCATGGGGCATGCGTCCGTGGTCAACACGCTTCTGTTCTGGGGCGCAGCCGTGGACAGCATCGACAGCGAAGGC 2442
Query 385 AGGACAGTCCTCAGTATAGCTTCAGCACAAGGAAATGTTGAGGTGGTACGTACTCTACTGGATAGAGGGTTAGA 458
||.|||||.|||||.||||||||.|||||.||.|||||.||||||||.||.|||||..||||.|||||.||.||
Sbjct 2443 AGAACAGTTCTCAGCATAGCTTCGGCACAGGGGAATGTGGAGGTGGTGCGCACTCTCTTGGACAGAGGCTTGGA 2516
Query 459 TGAAAATCACAGAGATGATGCTGGATGGACACCTTTGCACATGGCAGCTTTTGAAGGGCACAGATTGATATGTG 532
.||.|..|||.||||.||||||||.|||||.|||.|.|||||||||||||||||.||.|||||.||.|||||||
Sbjct 2517 CGAGAGCCACCGAGACGATGCTGGCTGGACGCCTCTACACATGGCAGCTTTTGAGGGTCACAGGTTAATATGTG 2590
Query 533 AAGCACTTATTGAACAAGGTGCTAGAACAAATGAGATTGACAATGATGGACGAATCCCTTTCATATTAGCTTCA 606
||||.||.|||||||||||||||||||||||||||||.|||||||||||.||.|||||.|||||.||.||.||.
Sbjct 2591 AAGCTCTCATTGAACAAGGTGCTAGAACAAATGAGATAGACAATGATGGGCGCATCCCCTTCATTTTGGCCTCC 2664
Query 607 CAAGAGGGTCATTATGATTGTGTTCAAATATTACTGGAAAACAAATCCAACATTGATCAAAGAGGTTATGATGG 680
||||||||.||||||||.|||||.||.||..|.|||||.||||||||||||||.||||||.||||.||||||||
Sbjct 2665 CAAGAGGGCCATTATGACTGTGTACAGATCCTGCTGGAGAACAAATCCAACATCGATCAACGAGGCTATGATGG 2738
Query 681 AAGAAATGCACTGCGGGTTGCTGCATTAGAAGGGCACAGGGACATTGTTGAATTGCTTTTTAGCCATGGTGCTG 754
.|||||||||.|.||.||||||||..|.|||||.|||||||||||.||.||.||.||.|||||||||||.||||
Sbjct 2739 GAGAAATGCATTACGTGTTGCTGCCCTGGAAGGACACAGGGACATCGTGGAGTTACTCTTTAGCCATGGGGCTG 2812
Query 755 ATGTTAACTGCAAAGATGCTGATGGTCGGCCTACACTTTATATCTTGGCCTTAGAAAATCAGCTTACAATGGCC 828
||||.||||.||||||||||||.||.|||||.||.|||||.||.||||||||||||||.|||||.|||||||||
Sbjct 2813 ATGTGAACTACAAAGATGCTGACGGGCGGCCCACGCTTTACATATTGGCCTTAGAAAACCAGCTGACAATGGCC 2886
Query 829 GAATATTTTTTAGAAAATGGTGCAAACGTAGAAGCAAGTGATGCTGAAGGAAGGACAGCACTTCATGTGTCTTG 902
||.||||||||.||||||||||||||.||.||.||.||||||||.||.|||||||||||.||.||.||.||.||
Sbjct 2887 GAGTATTTTTTGGAAAATGGTGCAAATGTGGAGGCCAGTGATGCGGAGGGAAGGACAGCGCTGCACGTCTCCTG 2960
Query 903 TTGGCAAGGCCATATGGAAATGGTGCAGGTCCTGATAGCATACCATGCTGACGTCAATGCTGCAGACAATGAAA 976
.|||||.||.||..||||.|||||||.|||.||.||.||.|.||||||.||.||||||||.|||||||||||.|
Sbjct 2961 CTGGCAGGGTCACGTGGAGATGGTGCGGGTACTTATTGCTTGCCATGCAGATGTCAATGCAGCAGACAATGAGA 3034
Query 977 AGCGCTCTGCTTTGCAGTCTGCAGCCTGGCAGGGCCATGTAAAAGTGGTTCAGCTTCTGATTGAGCATGGTGCT 1050
|||||||.||.|||||||||||||||||||||||||||||.||||||||.|||||||||||.||||||||.|||
Sbjct 3035 AGCGCTCAGCCTTGCAGTCTGCAGCCTGGCAGGGCCATGTCAAAGTGGTGCAGCTTCTGATAGAGCATGGCGCT 3108
Query 1051 GTAGTTGACCATACATGTAACCAAGGTGCAACTGCACTCTGTATTGCAGCCCAGGAAGGGCACATTGATGTTGT 1124
||.||.|||||.|||||.||||||||.||.||.||.|||||.||.|||||||||||.||.||..|.|||||.||
Sbjct 3109 GTGGTGGACCACACATGCAACCAAGGAGCCACCGCCCTCTGCATCGCAGCCCAGGAGGGACATGTGGATGTAGT 3182
Query 1125 TCAGGTCTTATTAGAGCATGGTGCTGATCCAAACCATGCTGATCAATTTGGACGCACTGCTATGCGTGTTGCAG 1198
.|||||.||..|.||.||.|||||||||||.||.|||||.||.|||||||||||||||||.|||.|.||.||||
Sbjct 3183 GCAGGTTTTGCTGGAACACGGTGCTGATCCCAATCATGCCGACCAATTTGGACGCACTGCCATGAGGGTGGCAG 3256
Query 1199 CCAAAAATGGACATTCTCAGATAATTAAATTATTAGAAAAATATGGTGCATCTAGTTTGAATGGCTGTTCCCCA 1272
|||||||.||.|||||||||||.|||||.||.|||||||||||.|||||.||.|||.||||||||||.|||||.
Sbjct 3257 CCAAAAACGGGCATTCTCAGATCATTAAGTTGTTAGAAAAATACGGTGCTTCCAGTCTGAATGGCTGCTCCCCT 3330
Query 1273 TCTCCTGTTCACACAATGGAGCAAAAACCTCTACAGT---CATTGTCTTCAAAAGTGCAGTCATTAACAATTAA 1343
||.|||||.|||||.||||||||.||.||||.||||| ||..||| |||.| |||||||..|.||.||.|.
Sbjct 3331 TCCCCTGTCCACACGATGGAGCAGAAGCCTCCACAGTCGGCACCGTC--CAAGA-TGCAGTCTCTGACTATCAG 3401
Query 1344 ATCAAATAGCTCTGGTAGTACTGGTGGAGGGGATATGCAGCCTTCGTTACGTGGTTTACCTAATGGGCCTACTC 1417
.||.||.|||||||||.|||||||.|||||.|||.||||||||||..|.||.||.||.||.||||||||..|||
Sbjct 3402 GTCCAACAGCTCTGGTGGTACTGGCGGAGGAGATCTGCAGCCTTCCCTCCGGGGCTTGCCCAATGGGCCCGCTC 3475
Query 1418 ATGCTTTTAGTTCTCCTTCAGAATCTCCAGATTCTACAGTTGACCGGCAGAAGTCATCACTGTCAAATAATTCC 1491
||||.||.||.|||||.|||||.||||||||.||.||.||.||.|||||.||||||||.|||||.||.|||||.
Sbjct 3476 ATGCCTTCAGCTCTCCGTCAGAGTCTCCAGACTCGACCGTGGATCGGCAAAAGTCATCCCTGTCCAACAATTCT 3549
Query 1492 CTGAAAAGCTCAAAAAATTCATCTTTGAGAACTACTTCATCTACAGCAACGGCTCAAACAGTGCCAATTGATAG 1565
||||||||||||||||||||||||.|||||||.||.||.||.|||||.||||||||.||.|||||.|||||.||
Sbjct 3550 CTGAAAAGCTCAAAAAATTCATCTCTGAGAACGACGTCCTCCACAGCCACGGCTCAGACGGTGCCCATTGACAG 3623
Query 1566 CTTTCATAACTTGTCATTTACAGAACAAATTCAGCAGCATTCATTGCCACGCAGTAGAAGTCGACAGTCAATTG 1639
.||.||||.|.|||||||.||.||.||.||.||||||||.|||.||||.|||||.||.||..|.|||||..|.|
Sbjct 3624 TTTCCATAGCCTGTCATTCACGGAGCAGATCCAGCAGCACTCACTGCCTCGCAGCAGGAGCAGGCAGTCCGTCG 3697
Query 1640 TTTCCCCATCTTCCACAACACAGTCCTTAGGACAGAGTCATAATTCACCAAGTAGTGAATTTGAGTGGAGTCAA 1713
|.|||||.||.||||||||.||||||||||||||.||.||||||||.||.||||||||.|||||.|||||.||.
Sbjct 3698 TGTCCCCCTCATCCACAACCCAGTCCTTAGGACACAGCCATAATTCTCCCAGTAGTGAGTTTGAATGGAGCCAG 3771
Query 1714 GTAAAGCCCAGTTTGAAGTCAACTAAAG-CAAGTAAAGGGGGGAAATCAGAAAATTCTGCCAAGTCTGGATCAG 1786
||.||.||.|||.|||||||||| |||| |||.||||||.||.||.|||||.||.||...|||||||||.||.|
Sbjct 3772 GTGAAACCGAGTCTGAAGTCAAC-AAAGTCAAATAAAGGAGGCAAGTCAGACAACTCCAGCAAGTCTGGGTCGG 3844
Query 1787 CTGGGAAAAAAGCGAAACAAAGTAATTCTTCACAGCCAAAGGTTTTAGAATATGAAATGACTCAGTTTGATAGA 1860
|||||||.||.||.|||||.|.||..||.|||||||||||||||.||||.||||||||||||||||||||.|.|
Sbjct 3845 CTGGGAAGAAGGCTAAACAGAATAGCTCCTCACAGCCAAAGGTTCTAGAGTATGAAATGACTCAGTTTGACAAA 3918
Query 1861 AGAGGACCTATAGCCAAATCCGGGACT-GCTGCACCACCTAAACAAATGCCAGCAGAATCTCAATGCAAAATTA 1933
||.||||||.|.|||||.||.||||.| || |||||||||||.|.||||||.||||||||.||.|||||..
Sbjct 3919 AGGGGACCTGTTGCCAAGTCTGGGAGTAGC----CCACCTAAACAGACGCCAGCTGAATCTCAGTGTAAAATCG 3988
Query 1934 TGATACCTTCAGCTCAG--CAGGAAATTGGTCGATCTCAACAGCAGTTTCTTATTCACCAACAAAGTGGGGAAC 2005
||.|.||||||.||||| |||.| |.||..|.||.|.|||||||||.||.|||||.||.||..|.||.|
Sbjct 3989 TGGTCCCTTCATCTCAGGACAGCA-----GCCGTGCCCAGCCGCAGTTTCTCATCCACCAGCAGAGCAGTGAGC 4057
Query 2006 AGAAGAAGAGAAATGGAATAATGACAAATCCAAATTATCATCTTCAGAGCAACCAGGTTTTTCTTGGTAGGGTT 2079
||||||.|||.|||||.||||||||.||.||.|||||.|||||.||||||||||||||.||.||.||.|||||.
Sbjct 4058 AGAAGAGGAGGAATGGGATAATGACGAACCCCAATTACCATCTGCAGAGCAACCAGGTGTTCCTGGGCAGGGTC 4131
Query 2080 TCAGTCCCACGAACAATGCAAGATAGAGGGCATCAGGAAGTGTTGGAGGGATACCCTTCCTCAGAGACAGAATT 2153
||.|||||.|||||..||||.||..|||||||||||||.|||.|||||||.|.|||..||||.||||||||..|
Sbjct 4132 TCCGTCCCTCGAACCGTGCAGGAGCGAGGGCATCAGGAGGTGCTGGAGGGCTTCCCCCCCTCGGAGACAGAGCT 4205
Query 2154 AAGCCTTAAACAAGCTCTGAAGCTTCAGATTGAAGGTTCTGACCCTAGCTTCAACTATAAAAAGGAAACACCAT 2227
.|.|||.||||||||.||||||||.||||||||.||.||||||||.|||||||||||.||.||||||||.||.|
Sbjct 4206 GAACCTCAAACAAGCCCTGAAGCTCCAGATTGAGGGCTCTGACCCCAGCTTCAACTACAAGAAGGAAACGCCCT 4279
Query 2228 TA 2229
|.
Sbjct 4280 TG 4281
