Construct: ORF TRCN0000465722

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006091.1_s317c1
Derived from:
ccsbBroadEn_12334
DNA Barcode:
GGGTTTTAACGACCCCGTAGCAAT
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ANKRD50 (57182)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000465722
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57182 ANKRD50 ankyrin repeat domain 50 NM_001167882.2 59.4% 59.4% 1_1521del
2 human 57182 ANKRD50 ankyrin repeat domain 50 NM_020337.3 51.9% 51.9% 1_2058del
3 human 57182 ANKRD50 ankyrin repeat domain 50 XM_017008471.1 51.9% 51.9% 1_2058del
4 mouse 99696 Ankrd50 ankyrin repeat domain 50 XM_006535582.3 42% 48.8% (many diffs)
5 mouse 99696 Ankrd50 ankyrin repeat domain 50 XM_011249725.2 42% 48.8% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2295
ORF length:
2229
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatggg acatagagag attgtggaac acctactgga ccatggagca gaagtaaatc
121atgaggatgt tgatggcagg actgcactct ctgtagctgc actttgtgtg cctgcaagta
181aagggcacgc atcagttgtt agccttttaa ttgatcgagg tgctgaagta gatcattgtg
241ataaagatgg catgactcca ctgctggtag ctgcctatga aggacatgtt gatgtggttg
301acttgcttct agaaggggga gcagatgtag atcacacaga taacaatggc cgtacacccc
361tcttagcagc agcgtctatg ggtcatgcat cagttgtaaa tacacttttg ttttggggtg
421cagctgtgga tagtattgat agtgaaggta ggacagtcct cagtatagct tcagcacaag
481gaaatgttga ggtggtacgt actctactgg atagagggtt agatgaaaat cacagagatg
541atgctggatg gacacctttg cacatggcag cttttgaagg gcacagattg atatgtgaag
601cacttattga acaaggtgct agaacaaatg agattgacaa tgatggacga atccctttca
661tattagcttc acaagagggt cattatgatt gtgttcaaat attactggaa aacaaatcca
721acattgatca aagaggttat gatggaagaa atgcactgcg ggttgctgca ttagaagggc
781acagggacat tgttgaattg ctttttagcc atggtgctga tgttaactgc aaagatgctg
841atggtcggcc tacactttat atcttggcct tagaaaatca gcttacaatg gccgaatatt
901ttttagaaaa tggtgcaaac gtagaagcaa gtgatgctga aggaaggaca gcacttcatg
961tgtcttgttg gcaaggccat atggaaatgg tgcaggtcct gatagcatac catgctgacg
1021tcaatgctgc agacaatgaa aagcgctctg ctttgcagtc tgcagcctgg cagggccatg
1081taaaagtggt tcagcttctg attgagcatg gtgctgtagt tgaccataca tgtaaccaag
1141gtgcaactgc actctgtatt gcagcccagg aagggcacat tgatgttgtt caggtcttat
1201tagagcatgg tgctgatcca aaccatgctg atcaatttgg acgcactgct atgcgtgttg
1261cagccaaaaa tggacattct cagataatta aattattaga aaaatatggt gcatctagtt
1321tgaatggctg ttccccatct cctgttcaca caatggagca aaaacctcta cagtcattgt
1381cttcaaaagt gcagtcatta acaattaaat caaatagctc tggtagtact ggtggagggg
1441atatgcagcc ttcgttacgt ggtttaccta atgggcctac tcatgctttt agttctcctt
1501cagaatctcc agattctaca gttgaccggc agaagtcatc actgtcaaat aattccctga
1561aaagctcaaa aaattcatct ttgagaacta cttcatctac agcaacggct caaacagtgc
1621caattgatag ctttcataac ttgtcattta cagaacaaat tcagcagcat tcattgccac
1681gcagtagaag tcgacagtca attgtttccc catcttccac aacacagtcc ttaggacaga
1741gtcataattc accaagtagt gaatttgagt ggagtcaagt aaagcccagt ttgaagtcaa
1801ctaaagcaag taaagggggg aaatcagaaa attctgccaa gtctggatca gctgggaaaa
1861aagcgaaaca aagtaattct tcacagccaa aggtttTAGA ATATGAAATG ACTCAGTTTG
1921ATAGAAGAGG ACCTATAGCC AAATCCGGGA CTGCTGCACC ACCTAAACAA ATGCCAGCAG
1981AATCTCAATG CAAAATTATG ATACCTTCAG CTCAGCAGGA AATTGGTCGA TCTCAACAGC
2041AGTTTCTTAT TCACCAACAA AGTGGGGAAC AGAAGAAGAG AAATGGAATA ATGACAAATC
2101CAAATTATCA TCTTCAGAGC AACCAGGTTT TTCTTGGTAG GGTTTCAGTC CCACGAACAA
2161TGCAAGATAG AGGGCATCAG GAAGTGTTGG AGGGATACCC TTCCTCAGAG ACAGAATTAA
2221GCCTTAAACA AGCTCTGAAG CTTCAGATTG AAGGTTCTGA CCCTAGCTTC AACTATAAAA
2281AGGAAACACC ATTATACCCA ACTTTCTTGT ACAAAGTGGT TGATATCGGT AAGCCTATCC
2341CTAACCCTCT CCTCGGTCTC GATTCTACGT AGTAATGAAC TAGTCCGTAA CTTGAAAGTA
2401TTTCGATTTC TTGGCTTTAT ATATCTTGTG GAAAGGACGA GGGTTTTAAC GACCCCGTAG
2461CAATACGCGT TAAGTCgaca atcaacctct ggattacaaa atttgtgaaa gatt

Download FASTA (ORF) (Full)