Nucleotide Global Alignment

Description

Query:
TRCN0000465871
Subject:
NR_004859.1
Aligned Length:
4522
Identities:
433
Gaps:
4079

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  TCCGGTGCTCAGTGGCTAGCCGAATAGCCGTGTTTGGGACCTGGGCTCGGGCTTCTTGCGTCCCCGCTAAGAAC  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  ATGTCACGGGGCCGAATCGTCCGTATTCTCTCAGCTTCAAGCTCCTCTACTTTTCAACCAGGTCACTAGCCCTT  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GACTCCTCTTATCAAACTTCCGGAACTGCCACCCCACCAGTGACTCCACAGGCACCAGGGCATGCAACAGGGCT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GGGACAGGAAGGCTCTCTTCTTCACCTCAAGCCTGCTGGGCTAACACTTGCGATTTTTACTAGAGTTAACTTTG  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TAATGTATGTCTCTGACTCTAGAATTTCAAGAGAAGTTCCACTTAGTGACTCCTAAGTGGAAGTTCTAAGATGG  370

Query    1  ----------------------------------------------------------------------ATGG  4
                                                                                  ||||
Sbjct  371  CTTCCCAGTGAGGTGATGAAGAGGTTTGAGCTTTAGAGTGCGGTTGCAAAGCTCTTCTCTGACCTGAACAATGG  444

Query    5  CTGTAGCTGTGGACCAACAAATCCAGACTCCTTCAGTACAAGATCTCCAAATAGTTAAACTGGAAGAAGATTCC  78
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CTGTAGCTGTGGACCAACAAATCCAGACTCCTTCAGTACAAGATCTCCAAATAGTTAAACTGGAAGAAGATTCC  518

Query   79  CACTGGGAGCAGGAAATTTCCCTTCAAGGGAATTACCCTGGACCAGAGACATCCTGCCAGAGCTTTTGGCATTT  152
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CACTGGGAGCAGGAAATTTCCCTTCAAGGGAATTACCCTGGACCAGAGACATCCTGCCAGAGCTTTTGGCATTT  592

Query  153  CCGTTACCAAGAAGCATCACGACCCCGAGAGGCCCTCCTCCAGCTCCAGAAGCTCTGTTGTCAGTGGCTAAGGC  226
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  CCGTTACCAAGAAGCATCACGACCCCGAGAGGCCCTCCTCCAGCTCCAGAAGCTCTGTTGTCAGTGGCTAAGGC  666

Query  227  CAGAGAAGTGTACAAAAGAGCAGATCCTGGAGTTGCTGGTCCTAGAACAGTTCCCGACTGTCCTTCTCCAGGAG  300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CAGAGAAGTGTACAAAAGAGCAGATCCTGGAGTTGCTGGTCCTAGAACAGTTCCCGACTGTCCTTCTCCAGGAG  740

Query  301  ATCCAGATCTGGGTCAGACAGCAGCATCCGGAGAGTGGAGAGGAGGCAGTGGCCCTGGTGGAAGACTTGCAGAA  374
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  ATCCAGATCTGGGTCAGACAGCAGCATCCGGAGAGTGGAGAGGAGGCAGTGGCCCTGGTGGAAGACTTGCAGAA  814

Query  375  AGAACCTGGAAGACAGAGGCTGGAGC-----------------------------CCTGC----CTGATGTGGC  415
            ||||||||||||||||||||||||||                             |||||    |||..||.||
Sbjct  815  AGAACCTGGAAGACAGAGGCTGGAGCCTCGGGCGAGGCCGTCCGGCCGCACCCCTCCTGCTCAGCTGCGGTCGC  888

Query  416  TCTGGGAATTCC--TGCAGAGAAGAGCAGGGGTGGCCAGGAGA-------------------------------  456
            ..|||     ||  ||      |.|||.|.|  ||||.||.||                               
Sbjct  889  CATGG-----CCAATG------ACAGCTGCG--GGCCCGGCGAGCCGAGCTCGAGCGAGCGAGACCGGCAGTAC  949

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct  950  TGCGAGCTGTGCGGGAAGATGGAGAACCTGCTGCGCTGCAGCCGCAGCTCCTTCTGCTGCAAGGAGCGCCAGCG  1023

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1024  CCAGGACTGGAAGAAGCACAAGCTCGTGTGCCAGGGCAGCGAGGGCGCCCTCGGCCACGGAGGGGGCCCTCACC  1097

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1098  AGGACTCCGGCCCCGCGCCGCCCGCTGCAGCGCCGCCGTCCAGGGACCGGGCCCTGGAGGCCAGGAAGGCAGCG  1171

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1172  AGGCGCCGGGACAGCGCCTCCGGGGACGCAGCCAAGGCAAAGGCCAAGTCCGCGGCCGACCCCGCGGCGGCCGC  1245

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1246  GTCCCCGCCTCGCGCGTCCCCGGGCCGGACAAAAGCCATGGCTGCTTGTTATCCGGTCAATGGAACGGGTTATG  1319

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1320  TACGTCATGTTGATAATCCAAATGGAGACGGAAGACGTGTGAAATGTATTACATTACGTTAAAGAACGGGATGC  1393

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1394  CAAGCCCTGCCTGATGTGGCTCTGGGAATTCCTGCAGAGAAGAGCAGGGGTGGCCAGGAGATAGTGAGCAGCTC  1467

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1468  CCAGGAGGCATGGAGGGATCCAGAACCTGGACTGAAGAACCACCTAGAAATAACTCAGCAGAATTCTGAAAATG  1541

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1542  AGGTCACGCTGGATTTTCCAATCCATAGGCCCAAAGTGAACTCCCACGTGGAGTAGGATGAAAACCCACAGCAT  1615

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1616  CTAGATCTTCAAATTCTGGAGAAAAAGAGAGTGTGAAAGACTGCTCAGTGGCTGGGGTGAGAGTCAAGTCTGGC  1689

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1690  CAGGTGCTAATCTGGAGAAAAGCCAAGACCTGGAGCGAGCTGGAGTGGCAGGCCCTGGAGGATGAGAAGGTGGC  1763

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1764  AGGAGTGCACTGGGGATACAAAGAAACCAAGATTTTTCTGGGAATTCTCAGAGGCCTGGATCCACGAAAAACTC  1837

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1838  CGCACCTGCCATCGAAACCACCAGGTGTACCGGATTATGGCTGAGCAGCTGTGAGAACATGGCTTCCTGTGGAC  1911

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1912  CCTGGAGCAATGTTGCTATCGGTTCAAAAACCTCCTGACCGACTACTGCAAAGCCAGGAGCACCTACACACCAG  1985

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 1986  GCACCAGTGTCTTCTATGATGAGATGGATGCCCTGTTGAGTCTTGGGGCACTTTCTAACACCTTTGATGCCTTA  2059

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 2060  GAGGTGGTAGGAGGCCTTCTTTGGGATTGAGAGGATTCCAAAGGGAACCAGGGCATAGCACTAGAAGATGTGGC  2133

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 2134  GGGATGGTAATGAAATAGTGGAGGAGTCTCAAGAGGAATCCTGGAGGCTTGGTCCCCAGGCCTTGAGGTGGAAT  2207

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 2208  CCCAGTGGCAACTCTCCCCCACAATGGACCTCAGAGCAGTGGGAGCGACGCAGTCCTGTGGGAAGCATTCAGGC  2281

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 2282  TCAGAATCAGGAGATGTGATTATTGTCCTGGCTCTGTTATGACTAATTTGGGTCTGGAATGGCCTCATCGGGGG  2355

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 2356  AAAAATTGGTGACAACTTTAAGAAATACTGTTTATATCCCGTCCTCAAATATTGCTTGACTCAACCCTCTACTG  2429

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 2430  AACCAGTAGTCCAGGGTGGCTCACAAAGACCACTTTGAGGCTCTTGCTCTGCTCTTTAGCCAAGGAGTCTCCCT  2503

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 2504  TCCTGCCTTCAGTAACAACATTACAGGAAGAGAGGAGAGAAAGGTAGGAGTTAAAGATCCAGTCATTTGTTTCC  2577

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 2578  ATCTAAAGTGCCCTATAAGCCGGGCATGGTGGCGCAAGCCTGTAGTCCCAGCTACTCGGGAGGCTGGGGCAGGA  2651

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 2652  GAATCACTTGAGCCCAGGAGTTGGAGGCCGCAGTGAGCTGTGATCATGCCACTGCATTCCAGCCTGGGCGACAG  2725

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 2726  AGTGAGACCCAGACTCAGCTGAAAAATAATAATATTATTAAAAGAATTTAAAATAAAGTGTTCCATAGATGTGA  2799

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 2800  ACCCTGCGTAGATTATACACACCAGTCTGCCATTTAAAAGGTTTGTTGTTCTTGGGCAACCTCTTTAAATACCC  2873

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 2874  TTAGCCTCCATTTTCTCATCTGGACAGTGGACATTGTGATGGTTTCTACCTCCCTGGGCTGTTATGAGGATCCT  2947

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 2948  GACACAGTATTAGCACTTGGCAAACGTTAGTTTTCATTATCATCATCATTATAATTATTATGAAAATAGATAAG  3021

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3022  GGCATTATCCTGTACCCTCAAAGGAGTAAAAGGGGGAAAATGAGTCATTAAACTTTCTCTTCTGGGAACTAGAC  3095

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3096  CTTCTTGAGAGGCACTATCATTCTCATTTCACCTGTCACTTCCAGACATGGGAGCAGAAAGTGAATTTCAGAAC  3169

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3170  TCCATGTCCCCTCCTGCTTTTCTCTGAGCAGGACTTCCAGTTCCCCAGCCAGATGGGGTCACAATGCTGCAGAA  3243

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3244  AAGTGAAGAGCTTTGGAATGAAGATCTCCCGGACTTCAAGGAGATTCAGAAAACGTCCAGTGCAGGTGGGAAAT  3317

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3318  GAATGGGAGCTAGCATTCCACCAACAAAGTCAGCCCTGGGATTCTAAACTCGGACAAGCCAGCACTGGTTAAGG  3391

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3392  GCTGAGGGGAACCAGGCACTCAGTGCACCCAGTTTACTATTCTGTGGTGTGGAAAGCACAGGACTTGAGAAGCA  3465

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3466  GGTGGCACCCAGGAAAGCCTGTTCCCCTAAGTAAGTTTGAACTTTAGTTACTTGAAAAAAGGTATAACTGAATT  3539

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3540  ATGAGTGTTTATGATTTTATCTTTATTTTATTTTTTTTGAGATGGAGTCTCACCCTGTCACCCAGGCTGGAATG  3613

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3614  CAGTGGCACAATCTCGGTTCACTGCAGCCTCTACCTCTCAGGTTCAAGCAATTCTCCTGCCTCACCCTCCTGAG  3687

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3688  TAGTGGGGATTACAGGTGTGCCACCACCATGCCCGTCTCTAATTTTTATATTTTTAGTAGAGACGGGGTTTCAC  3761

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3762  CATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAAGTGATCCACCCACCTTGGCCCCCCACAAAGTGCTGGG  3835

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3836  ATTACAGGCGTGAGCCACTGTGCCTGGTCTATCTTTAAATTCCTATCTGAATTTGTTTAGGTTTTTTAAATAAA  3909

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3910  AATCTTTCTTTTTTTTTAGAGACAGGGGTTCACCATGGTGCCCAGGCTGATCTCGAACTCCTCCTGGACTCAAG  3983

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 3984  CTATCCTCCCACCTCAGCCTCCCAAAGTACTGGGATTACAGACATGAGCCACATGCTTGACCTGAATTTTAACT  4057

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 4058  GCAGTTAATTATCACTTAACCAGCGAATTCACACAGGAGAAATCCCCTGGCCGGGCGCGGTGGCTCACACCTGT  4131

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 4132  AATCCCAGCTCTTCGGGAGGCCGAGGTGGGTAGATCACAAGGTCAAGAGATCAAGACCATTCTGGCCAACATGG  4205

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 4206  TGAAACTCCGTCTGTACCAAAAATACAAAAATTACCTGGGCATGGTGGTACGTGCCTGTAATCCCAGCTACTTG  4279

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 4280  GCAGGCTGAGGCAGGAGCATTGCTTGAACCCATGAGGTGGAGGTTGCAGTGAGCCGAGATCACGCCACTGCACT  4353

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 4354  CAAGCCTGGGTGACAGAGCAAGACTCCATCTCTACTACAAAAAAAAAAAAAAAAAAAATTCAACCACCTTAGGA  4427

Query  457  --------------------------------------------------------------------------  456
                                                                                      
Sbjct 4428  AGCCTCTCATTTATGTATTTCTAGCATGTAATTAGTGTTGCACATGGGAAGGGCTAATAGATGCTGACAGAGTG  4501

Query  457  --------  456
                    
Sbjct 4502  AACAACTT  4509

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.