Nucleotide Global Alignment

Description

Query:
TRCN0000466223
Subject:
XR_001781538.1
Aligned Length:
2365
Identities:
1379
Gaps:
844

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CTTCACCCCCTTAGCATATGTTAGTTACACATTTTAATGGGTTTCACTGTTACATTTTCATACGTGTGTGTAAT  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GTACTTGATCACCCATATTCCCCATAACTCTGGTTCCATCGTTCCCATAGCCTCCTTGTCTCCTTACATTGTCA  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  TATCGGTTTTTGTTTTGTTTTTTGTTTTGTTTTTGTGACCCACAGAGTTTAACTAGGTTTGCAAATAGGATCAT  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  GAATGAGGGTTAATTTACAGTATCACTAGCACCTTATCAATGGCTATACCATCAAAGAAAATGGCTTTCCTTCT  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  CCCCAGCAACCATTAGCTGCATGTATAGTCTCAACAATAGAGGACCAGAGGGAGGGAAGAGGTGATGTGGTGTG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  AGCCCTCCATATCTCAGGATTGCATGTTCACATATCCAATATGTGATAATCACTATATTTTATGCTGATAATCA  444

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  445  CTATATCCCTAGAGTTTATGGGTTTGTTTGTTTGTTTGTTTGTTTTTAAGACAAACTTTCACTCTATAGCCTAG  518

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  519  GCTGGCCTGAAACTCACTATGAAGCCAGAGATGACCTTGAACTTCTGATCCTCTCACCTCCATCCCTGAGTGCT  592

Query    1  --------------------------------------------ATGGCTTGCCTCCATGAGACCCGAACACCC  30
                                                        |||||.|||||||||||.||||||||||||
Sbjct  593  GGGACTGCTGGGCCCGCTGCTCAGCACACCTGGCTCCAGAGGCCATGGCCTGCCTCCATGAAACCCGAACACCC  666

Query   31  TCTCCTTCCTTTGGGGGCTTTGTGTCTACCCTAAGTGAGGCATCCATGCGCAAGCTGGACCCAGACACTTCTGA  104
            ||.||||||||||||||||||||||||||.|||||||||||.||.|||||.||||||||.|||||||||||.||
Sbjct  667  TCCCCTTCCTTTGGGGGCTTTGTGTCTACTCTAAGTGAGGCTTCTATGCGAAAGCTGGATCCAGACACTTCAGA  740

Query  105  CTGCACTCCCGAGAAGGACCTGACGCCTACCCAGTGTGTACTTCGAGATGTGGTACCCCTTGGTGGGCAGGGTG  178
            ||||||.||||||||.|||||||||||.|||||.|||||||||||||||||.||.||.||.|||||||||||||
Sbjct  741  CTGCACCCCCGAGAAAGACCTGACGCCCACCCAATGTGTACTTCGAGATGTTGTGCCTCTCGGTGGGCAGGGTG  814

Query  179  GGGGAGGGCCCAGCCCCTCCCCAGGTGGAGAGCCGCCCCCTGAGCCTTTTGCCAACAGTGTCCTGCAGCTACAT  252
            |.|||||.||||||||||||||||||||||||||.|||||.||||||||||||||.||||||||.|||||||||
Sbjct  815  GAGGAGGACCCAGCCCCTCCCCAGGTGGAGAGCCTCCCCCAGAGCCTTTTGCCAATAGTGTCCTCCAGCTACAT  888

Query  253  GAGCAGGATGCAGGGGGCCCAGGGGGAGCAGCTGGGTCACCTGAGAGTCGGGCATCCAGAGTTCGAGCTGACGA  326
            |||||||||.||||.||.|||||||||||..|||||||||||||||||||.|||||.||||||||||||||.||
Sbjct  889  GAGCAGGATACAGGTGGGCCAGGGGGAGCCACTGGGTCACCTGAGAGTCGAGCATCTAGAGTTCGAGCTGATGA  962

Query  327  GGTGCGACTGCAGTGCCAGAGTGGCAGTGGCTTCCTTGAGGGCCTCTTTGGCTGCCTGCGCCCTGTCTGGACCA  400
            |||.||.||||||||||||||||||||||||||||||||.||.||.||||||||||||||||||||||||||.|
Sbjct  963  GGTACGTCTGCAGTGCCAGAGTGGCAGTGGCTTCCTTGAAGGTCTTTTTGGCTGCCTGCGCCCTGTCTGGACAA  1036

Query  401  TGATTGGCAAAGCCTACTCCACTGAGCACAAGCAGCAGCAGGAAGACCTTTGGGAGGTCCCCTTTGAGGAAATC  474
            ||||||||||||||||||||||.||.||||||||.||||||||||||||||||||.||||||||||||||||||
Sbjct 1037  TGATTGGCAAAGCCTACTCCACAGAACACAAGCAACAGCAGGAAGACCTTTGGGAAGTCCCCTTTGAGGAAATC  1110

Query  475  CTGGACCTGCAGTGGGTGGGCTCAGGGGCCCAGGGTGCTGTCTTCCTGGGGCGCTTCCACGGGGAGGAGGTGGC  548
            |||||||||||||||||.|||||||||||.|||||||||||.||||||||.||||||||||||||||||||.||
Sbjct 1111  CTGGACCTGCAGTGGGTAGGCTCAGGGGCTCAGGGTGCTGTTTTCCTGGGACGCTTCCACGGGGAGGAGGTAGC  1184

Query  549  TGTGAAGAAGGTGCGAGACCTCAAAGAAACCGACATCAAGCA-CTTGCGAAAGCTGAAGCACCCCAACATCATC  621
            ||||||||||||.|||||.|||||.||.||.||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1185  TGTGAAGAAGGTTCGAGATCTCAAGGAGACTGACATCAAGCATCTT-CGAAAGCTGAAGCACCCCAACATCATC  1257

Query  622  ACTTTCAAGGGTGTGTGCACCCAGGCTCCCTGCTACTGCATCCTCATGGAGTTCTGCGCCCAGGGCCAGCTGTA  695
            ||||||||||||||.|||||.|||||.|||||||||||||||||.|||||.||||||||.||.||.|||||.||
Sbjct 1258  ACTTTCAAGGGTGTTTGCACACAGGCCCCCTGCTACTGCATCCTTATGGAATTCTGCGCTCAAGGACAGCTATA  1331

Query  696  TGAGGTACTGCGGGCTGGCCGCCCTGTCACCCCCTCCTTACTGGTTGACTGGTCCATGGGCATCGCTGGTGGCA  769
            ||||||.||..|.||.|||||||||||||||||||||||.||||||||||||||||||||||||||||||||||
Sbjct 1332  TGAGGTGCTCAGAGCCGGCCGCCCTGTCACCCCCTCCTTGCTGGTTGACTGGTCCATGGGCATCGCTGGTGGCA  1405

Query  770  TGAACTACCTGCACCTGCACAAGATTATCCACAGGGATCTCAAGTCACCCAACATGCTAATCACCTACGACGAT  843
            ||||.|||||||||||||||||||||||||||||.||.||.|||||||||||||||||||||||.|||||||||
Sbjct 1406  TGAATTACCTGCACCTGCACAAGATTATCCACAGAGACCTGAAGTCACCCAACATGCTAATCACATACGACGAT  1479

Query  844  GTGGTGAAGATCTCAGATTTTGGCACTTCCAAGGAGCTGAGTGACAAGAGCACCAAGATGTCCTTTGCAGGGAC  917
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||
Sbjct 1480  GTGGTGAAGATCTCAGATTTTGGCACTTCCAAGGAGCTGAGTGACAAGAGCACCAAGATGTCCTTTGCAGGAAC  1553

Query  918  AGTAGCCTGGATGGCCCCTGAGGTGATCCGCAATGAACCTGTGTCTGAGAAGGTCGACATCTGGTCCTTTGGCG  991
            |||||||||||||||.|||||.||||||.|.|||||||||||||||||||||||.|||||||||||||||||.|
Sbjct 1554  AGTAGCCTGGATGGCTCCTGAAGTGATCAGAAATGAACCTGTGTCTGAGAAGGTTGACATCTGGTCCTTTGGGG  1627

Query  992  TGGTGCTATGGGAACTGCTGACTGGTGAGATCCCCTACAAAGACGTAGATTCCTCAGCCATTATCTGGGGTGTG  1065
            ||||||||||||||||.||||||||.|||||.|||||||||||.|||||||||||||||||.||||||||||||
Sbjct 1628  TGGTGCTATGGGAACTACTGACTGGAGAGATTCCCTACAAAGATGTAGATTCCTCAGCCATCATCTGGGGTGTG  1701

Query 1066  GGAAGCAACAGTCTCCATCTGCCCGTGCCCTCCAGTTGCCCAGATGGTTTCAAGATCCTGCTTCGCCAGTGCTG  1139
            |||||||||||||||||.|||||.||.||||||||.||||||||||||||.||.||.||.||||||||||||||
Sbjct 1702  GGAAGCAACAGTCTCCACCTGCCTGTACCCTCCAGCTGCCCAGATGGTTTTAAAATTCTACTTCGCCAGTGCTG  1775

Query 1140  GAATAGCAAACCACGAAATCGCCCATCATTCCGACAGATCCTGCTGCATCTGGACATTGCCTCAGCTGATGTAC  1213
            |||.||||||||||||||||||||||||||||||||||||.|||||||.||||||||.|||||.||||||||.|
Sbjct 1776  GAACAGCAAACCACGAAATCGCCCATCATTCCGACAGATCTTGCTGCACCTGGACATCGCCTCCGCTGATGTGC  1849

Query 1214  TCTCCACACCCCAGGAGACTTACTTTAAGTCCCAGG-------CAGAGTGGCGGGAAGAAGTAAAACTGCACTT  1280
            ||||.|||||||||||||||||||||||||||||||       ||...|||        |||       |||..
Sbjct 1850  TCTCTACACCCCAGGAGACTTACTTTAAGTCCCAGGAACCATTCATCATGG--------AGT-------CACAG  1908

Query 1281  TGAAAAG------ATTAAGTCAGAAGGGA--CCTGTCTGCACCGCCT-AGAAGAGGAACTGGTGATGAGGAGGA  1345
            .|||.||      .||..|.||.|||.||  ||.| || |||||  | .|||.|..|.||              
Sbjct 1909  AGAACAGGGTCCATTTCGGCCACAAGCGAACCCAG-CT-CACCG--TGGGAAAATCATCT--------------  1964

Query 1346  GGGAGGAGC----TCAGACACGCCCTGGACATCAGGGAGCACTATGAAAGGAAGCTGGAGAGAGCCAACAACCT  1415
                   ||    |||||||.|||||||||||||||||||||||||||.|||||.|||||||||||||||||||
Sbjct 1965  -------GCCCTTTCAGACATGCCCTGGACATCAGGGAGCACTATGAACGGAAGTTGGAGAGAGCCAACAACCT  2031

Query 1416  GTATATGGAACTTAATGCCCTCATGTTGCAGCTGGAACTCAAGGAGAGGGAGCTGCTCAGGCGAGAGCAAGCTT  1489
            |||.||||||||.||||||||||||.||||.||.||||||||.||||||||..||||||||||||||||.||||
Sbjct 2032  GTACATGGAACTGAATGCCCTCATGCTGCAACTAGAACTCAAAGAGAGGGAATTGCTCAGGCGAGAGCAGGCTT  2105

Query 1490  TAGAGCGGAGGTGCCCAGGCCTGCTGAAGCCACACCCTTCCCGGGGCCCCCAGCTTCCCTCCCTCCAT-GAAAG  1562
            ||||..||.||||.||.||.||.||.|||.||||||||||.|||||||            .|||.||| |||| 
Sbjct 2106  TAGAAAGGCGGTGTCCTGGTCTACTAAAGTCACACCCTTCTCGGGGCC------------TCCTACATGGAAA-  2166

Query 1563  CCACTCGTATTCCTTGTACATAGAGAA----ATATTTATATAAATTATATATATATATACATATATATATATAT  1632
             ||||              ||.|||||    |                                          
Sbjct 2167  -CACT--------------ATGGAGAAGCTCA------------------------------------------  2183

Query 1633  ATGCGCCACATAATCAACAGAAAGATGGGGCTGTCCCAGCCGTAAGTCAGGCTCGAGGGAGACTGATCCCC  1703
                                                                                   
Sbjct 2184  -----------------------------------------------------------------------  2183

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