Nucleotide Global Alignment

Description

Query:
TRCN0000466288
Subject:
XR_001779874.1
Aligned Length:
2414
Identities:
980
Gaps:
1360

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CGCGCCTGCGCAGTGCGGCGCCTAGGGGGAACGCGAGAAGGAGACGGACGTTGAGAGAACGAGGAGGAAGGCGA  74

Query    1  ----ATGGCGTCCACGGATTACAGTACCTATAGCCAAGCTGCAGCGCAGCAGGGCTACAGTGCTTACACCGCCC  70
                |||||||||||||||||||||||||||||.|||||||||||.||||||||||||||||||||||||||||
Sbjct   75  GAAAATGGCGTCCACGGATTACAGTACCTATAGTCAAGCTGCAGCCCAGCAGGGCTACAGTGCTTACACCGCCC  148

Query   71  AGCCCACTCAAGGATATGCACAGACCACCCAGGCATATGGGCAACAAAGCTATGGAACCTATGGACAGCCCACT  144
            ||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct  149  AGCCAACTCAAGGATATGCACAGACCACCCAGGCATATGGGCAACAAAGCTATGGAACCTATGGACAGCCTACT  222

Query  145  GATGTCAGCTATACCCAGGCTCAGACCACTGCAACCTATGGGCAGACCGCCTATGCAACTTCTTATGGACAGCC  218
            ||||||||||||||.|||||||||||||||||.|||||.||||||||.||.||||||||||||||.||||||||
Sbjct  223  GATGTCAGCTATACTCAGGCTCAGACCACTGCCACCTACGGGCAGACTGCATATGCAACTTCTTACGGACAGCC  296

Query  219  TCCCACT------------------GGTTATACTACTCCAACTGCCCCCCAGGCATACAGCCAGCCTGTCCAGG  274
            |||||||                  |||||||..||||||||||||||.|||||.||||||||||||||.||||
Sbjct  297  TCCCACTGTAGAAGGGACCAGTACAGGTTATAGCACTCCAACTGCCCCGCAGGCGTACAGCCAGCCTGTGCAGG  370

Query  275  GGTATGGCACTGGTGCTTATGATACCACCACTGCTACAGTCACCACCACCCAGGCCTCCTATGCAGCTCAGTCT  348
            |.|||||||||||..|||||||.|.|||||||||||||||||||||.||.||||||||.||.|||||||||.||
Sbjct  371  GATATGGCACTGGGACTTATGACAGCACCACTGCTACAGTCACCACAACGCAGGCCTCTTACGCAGCTCAGACT  444

Query  349  GCATATGGCACTCAGCCTGCTTATCCAGCCTATGGGCAGCAGCCAGCAGCCACTGCACCTACAAGACCGCAGGA  422
            |||||||||||.||||||||.||.||..|||||||.|||||||||.|||||||.||||||||.|||||.|||||
Sbjct  445  GCATATGGCACCCAGCCTGCCTACCCCACCTATGGCCAGCAGCCAACAGCCACCGCACCTACCAGACCACAGGA  518

Query  423  TGGAAACAAGCCCACTGAGACTAGTCAACCTCAATCTAGCACAGGGGGTTACAACCAGCCCAGCCTAGGATATG  496
            |||.||||||||..|||||||||||||||||||||||||||||||||||||.|||||.||||||||||||||||
Sbjct  519  TGGTAACAAGCCTGCTGAGACTAGTCAACCTCAATCTAGCACAGGGGGTTATAACCAACCCAGCCTAGGATATG  592

Query  497  GACAGAGTAACTACAGTTATCCCCAGGTACCTGGGAGCTACCCCATGCAGCCAGTCACTGCACCTCCATCCTAC  570
            ||||||||||||||||.||||||||||||||||||||||||||.||||||||||||||.|||||||||||.||.
Sbjct  593  GACAGAGTAACTACAGCTATCCCCAGGTACCTGGGAGCTACCCAATGCAGCCAGTCACCGCACCTCCATCTTAT  666

Query  571  CCTCCTACCAGCTATTCCTCTACACAGCCGACTAGTTATGATCAGAGCAGTTACTCTCAGCAGAACACCTATGG  644
            ||||||||||||||.||||||.||||||||||||||||.|||||||||||||||||||||||||||||||||||
Sbjct  667  CCTCCTACCAGCTACTCCTCTTCACAGCCGACTAGTTACGATCAGAGCAGTTACTCTCAGCAGAACACCTATGG  740

Query  645  GCAACCGAGCAGCTATGGACAGCAGAGTAGCTATGGTCAACAAAGCAGCTATGGGCAGCAGCCTCCCACTAGTT  718
            |||.|||||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct  741  GCAGCCGAGCAGCTATGGACAACAGAGTAGCTATGGTCAACAAAGCAGCTATGGGCAGCAGCCTCCTACTAGTT  814

Query  719  ACCCACCCCAAACTGGATCCTACAGCCAAGCTCCAAGTCAATATAGCCAACAGAGCAGCAGCTACGGGCAGCAG  792
            ||||.||.||.|||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  ACCCCCCTCAGACTGGATCCTACAGCCAGGCTCCAAGTCAATATAGCCAACAGAGCAGCAGCTACGGGCAGCAG  888

Query  793  AGTTCATTCCGACAGGACCACCCCAGTAGCATGGGTGTTTATGGGCAGGAGTCTGGAGGATTTTCCGGACCAGG  866
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  AGTTCATTCCGACAGGACCACCCCAGTAGCATGGGTGTTTATGGGCAGGAGTCTGGAGGATTTTCCGGACCAGG  962

Query  867  AGAGAACCGGAGCATGAGTGGCCCTGATAACCGGGGCAGGGGAAGAGGGGGATTTGATCGTGGAGGCATGAGCA  940
            |||||||||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  AGAGAACCGGAGCTTGAGTGGCCCTGATAACCGGGGCAGGGGAAGAGGGGGATTTGATCGTGGAGGCATGAGCA  1036

Query  941  GAGGTGGGCGGGGAGGAGGACGCGGTGTAATGGGGTTACA------AAGTG---AGA-----------GCCTT-  993
            |||||||||||||||||||||||||||.|.|||||...||      ||| |   |||           ||||| 
Sbjct 1037  GAGGTGGGCGGGGAGGAGGACGCGGTGGACTGGGGACCCATGGATGAAG-GACCAGATCTTGATCTAGGCCTTC  1109

Query  994  GTAT-----------------------ACACTTCAAT------------ACTTAA-----AAAGTACCCGTACT  1027
            .|||                       |||.|.||||            | ||||     ||.||     .|||
Sbjct 1110  CTATAGATCCCGATGAAGACTCTGACAACAGTGCAATTTATGTGCAAGGA-TTAAATGACAATGT-----GACT  1177

Query 1028  CAGTACTCAGCCGGCAG-------------------------CATAATGAA-AAGTG----GGAC---------  1062
            |.|.| |.|.|.|||||                         ||..||||| |||.|    ||||         
Sbjct 1178  CTGGA-TGATCTGGCAGACTTCTTTAAGCAGTGTGGGGTTGTCAAGATGAACAAGAGAACTGGACAACCCATGA  1250

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 1251  TCCATATCTACCTGGATAAGGAGACAGGAAAGCCTAAAGGGGACGCCACAGTGTCCTATGAAGATCCACCAACT  1324

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 1325  GCAAAGGCTGCCGTGGAATGGTTTGATGGGAAAGATTTTCAAGGAAGCAAACTTAAAGTGTCTCTTGCCCGAAA  1398

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 1399  GAAGCCTCCAATGAACAGCATGCGGGGAGGCATGCCACCTCGTGAGGGCAGGGGGATGCCACCACCACTTCGTG  1472

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 1473  GAGGTCCTGGTGGCCCAGGAGGCCCTGGAGGACCCATGGGTCGCATGGGAGGCCGTGGAGGAGACAGAGGGGGC  1546

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 1547  TTCCCTCCAAGAGGGCCCCGAGGCTCCAGAGGAAACCCCTCTGGAGGAGGAAATGTCCAGCACCGAGCTGGAGA  1620

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 1621  CTGGCAGTGTCCCAATCCGGGCTGTGGAAACCAGAACTTCGCTTGGAGAACAGAATGCAACCAGTGTAAGGCCC  1694

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 1695  CTAAGCCCGAGGGCTTCCTCCCGCCACCCTTTCCACCTCCGGGTGGTGATCGTGGACGAGGTGGCCCTGGTGGC  1768

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 1769  ATGCGAGGAGGAAGAGGAGGACTCATGGACCGTGGTGGTCCTGGAGGAATGTTCAGAGGTGGCAGAGGTGGAGA  1842

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 1843  CAGAGGAGGCTTCCGAGGTGGCCGTGGAATGGACCGAGGTGGCTTTGGTGGAGGAAGACGAGGTGGTCCTGGGG  1916

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 1917  GGCCTCCTGGACCTTTAATGGAACAGATGGGAGGAAGAAGAGGCGGACGTGGAGGACCTGGGAAAATGGATAAA  1990

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 1991  GGCGAGCACCGTCAGGAACGCAGAGACCGGCCCTACTAGAGACCTGCAGAGCTGCATTGACGACCAGATTTATT  2064

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 2065  TTTTAAACCAGAAAATGTTTTAAATTTATAATTCCATATTTATAATGTTGGCGACAACATTATGATTATTCCTT  2138

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 2139  GTCTGTACTTTAGTATTTTCACCATTTGTGAAGAAACATTAAAACAAGTTAAATAGTAGTGTGCTGAGTTTTTT  2212

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 2213  TTTGTTGTTGTTGTTTTTTGATTTGTTCTTTTTTTTTTCCTTTTTAAGATGGTTGTTTTAAGACTTAACAATGG  2286

Query 1063  --------------------------------------------------------------------------  1062
                                                                                      
Sbjct 2287  GAACCCCTTGTGAGCATGCTCAGTATCATTGTGGAGAACCAAGAGGGCCTCTAATTGTAACAATGTTCATGGTT  2360

Query 1063  ----------------------------------------------  1062
                                                          
Sbjct 2361  GTGATTTTTTTTTTTAAATAAAATTCCAAATGTTTATAAACTGTCA  2406

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.