Nucleotide Global Alignment

Description

Query:
TRCN0000466542
Subject:
XM_006503883.3
Aligned Length:
1884
Identities:
1472
Gaps:
180

Alignment

Query    1  ATGCCAGGCACAAAACGGTTTCAACATGTCATTGAGACCCCGGAGCCTGGCAAGTGGGAGTTGTCTGGGTACGA  74
            ||||||.||||.||.||||.|||.|||||.||.||||||||.||||||||..|.||||||              
Sbjct    1  ATGCCAAGCACCAAGCGGTATCAGCATGTGATCGAGACCCCTGAGCCTGGGGAATGGGAG--------------  60

Query   75  GGCAGCTGTGCCAATCACGGAGAAGTCAAACCCACTGACCCAGGATCTAGACAAAGCAGATGCTGAGAACATTG  148
                                                                                      
Sbjct   61  --------------------------------------------------------------------------  60

Query  149  TTCGACTGCTAGGGCAATGTGATGCTGAGATCTTCCAGGAGGAGGGGCAAGCCCTGTCCACATACCAGAGACTC  222
              ||||||                                                                  
Sbjct   61  --CGACTG------------------------------------------------------------------  66

Query  223  TACAGCGAATCCATTCTGACCACCATGGTACAGGTGGCTGGGAAAGTTCAGGAAGTGCTGAAGGAGCCAGATGG  296
            |||||.||.||..||||||||||||||.|.||.||||||||.||.||.||||||||||||||||||||||||||
Sbjct   67  TACAGTGAGTCAGTTCTGACCACCATGTTGCAAGTGGCTGGCAAGGTCCAGGAAGTGCTGAAGGAGCCAGATGG  140

Query  297  GGGGCTGGTTGTGCTGAGTGGAGGGGGCACCTCTGGCCGGATGGCATTCCTCATGTCGGTGTCCTTTAATCAGC  370
            |||.|||||.||||||||||||||||||||||||||.||.|||||||||||.|||||.|||||.||.||.||||
Sbjct  141  GGGCCTGGTGGTGCTGAGTGGAGGGGGCACCTCTGGTCGTATGGCATTCCTTATGTCTGTGTCTTTCAACCAGC  214

Query  371  TGATGAAAGGTCTGGGACAGAAACCTCTTTACACCTACCTCATTGCAGGTGGTGACAGGTCTGTGGTGGCCTCT  444
            |||||||||||||||||||.||||||||||||||.||||||||||||||.||||||||||||||.||.||||||
Sbjct  215  TGATGAAAGGTCTGGGACAAAAACCTCTTTACACATACCTCATTGCAGGGGGTGACAGGTCTGTTGTAGCCTCT  288

Query  445  AGGGAGGGGACAGAAGATAGTGCCTTGCACGGGATTGAGGAACTGAAGAAGGTGGCTGCCGGGAAGAAGAGAGT  518
            .||||..|||||||||||||.|||.|.|||||.||.|||||.|||||||||||||||||.|||||.||||||||
Sbjct  289  CGGGAACGGACAGAAGATAGCGCCCTACACGGAATCGAGGAGCTGAAGAAGGTGGCTGCTGGGAAAAAGAGAGT  362

Query  519  GATTGTCATTGGCATTTCTGTGGGACTCTCTGCTCCCTTTGTGGCAGGCCAGATGGACTGCTGCATGAACAACA  592
            |.|.||.||.||||||||.||||||||||||||.|||||||||||||||||||||||||.|||||||.|.||||
Sbjct  363  GGTCGTTATAGGCATTTCCGTGGGACTCTCTGCGCCCTTTGTGGCAGGCCAGATGGACTACTGCATGGATAACA  436

Query  593  CAGCTGTCTTCTTGCCAGTCCTGGTTGGCTTCAATCCAGTGAGCATGGCCAGAAATGACCCCATTGAAGACTGG  666
            ||||||||||||||||.||||||||||||||||||||.||||||||||||||||||||.|||||||||||||||
Sbjct  437  CAGCTGTCTTCTTGCCGGTCCTGGTTGGCTTCAATCCGGTGAGCATGGCCAGAAATGATCCCATTGAAGACTGG  510

Query  667  AGTTCAACATTCCGACAAGTAGCAGAGCGGATGCAGAAAATGCAGGAGAAACAGAAAGCTTTTGTGCTCAATCC  740
            ||.||.||||||||||||||.|||||||||||||||||.|||||||||||||||.||||.||||||||||||||
Sbjct  511  AGATCGACATTCCGACAAGTGGCAGAGCGGATGCAGAAGATGCAGGAGAAACAGGAAGCCTTTGTGCTCAATCC  584

Query  741  TGCCATCGGGCCCGAGGGTCTCAGCGGCTCCTCCCGGATGAAAGGTGGAAGTGCCACCAAGATTCTGCTGGAAA  814
            ||||||||||||.|||||.|||||.|||||.|||||.||||||||||||||.||||||||||||||.|||||||
Sbjct  585  TGCCATCGGGCCTGAGGGGCTCAGTGGCTCTTCCCGAATGAAAGGTGGAAGCGCCACCAAGATTCTACTGGAAA  658

Query  815  CCCTGTTATTAGCAGCCCATAAGACTGTGGACCAGGGCATTGCAGCATCTCAAAGATGCCTCCTGGAAATCTTG  888
            |||||.||.||||||||||||||||||||||||||||..|||...|.||||||||||||||.|||||||||.||
Sbjct  659  CCCTGCTACTAGCAGCCCATAAGACTGTGGACCAGGGTGTTGTGTCCTCTCAAAGATGCCTTCTGGAAATCCTG  732

Query  889  CGGACATTTGAGCGAGCTCATCAGGTGACCTACAGCCAAAGCCCCAAGATTGCCACCCTGATGAAGAGTGTCAG  962
            .|||||||||||||.|||||||||||.||||||||.|||||..||||.||||||||.||||.||||...||..|
Sbjct  733  AGGACATTTGAGCGGGCTCATCAGGTAACCTACAGTCAAAGTTCCAAAATTGCCACTCTGACGAAGCAAGTTGG  806

Query  963  CACCAGTCTGGAGAAGAAAGGCCACGTGTACCTGGTTGGCTGGCAGACCCTGGGCATCATTGCCATCATGGATG  1036
            ||.|||.||||||||.||||||||||||.||.|||||||||||||||||||.||.|||||.|||||.|||||||
Sbjct  807  CATCAGCCTGGAGAAAAAAGGCCACGTGCACTTGGTTGGCTGGCAGACCCTCGGTATCATCGCCATTATGGATG  880

Query 1037  GAGTAGAGTGCATCCACACCTTTGGTGCTGATTTCCGAGATGTCCGTGGCTTTCTCATTGGTGATCACAGTGAC  1110
            |.||||||||.||||||||.|||||||||||||||||||||.|||||||||||||.||||||||.||||.||||
Sbjct  881  GGGTAGAGTGTATCCACACTTTTGGTGCTGATTTCCGAGATATCCGTGGCTTTCTTATTGGTGACCACAATGAC  954

Query 1111  ATGTTTAACCAGAAGGCTGAGCTCACCAACCAGGGTCCCCAGTTCACCTTCTCCCAGGAGGACTTCCTGACTTC  1184
            ||||||||||||||||.||||||||.|||.|||||||||||||||||||||||.|||||.||||||||||||||
Sbjct  955  ATGTTTAACCAGAAGGATGAGCTCAGCAATCAGGGTCCCCAGTTCACCTTCTCTCAGGATGACTTCCTGACTTC  1028

Query 1185  CATCCTTCCCTCTCTCACGGAAATCGATACTGTGGTCTTCATTTTCACCCTGGATGACAACCTCACGGAGGTGC  1258
            ..|.||.||.||.||.||||||||.||.|||||||||||||||||.|||||||||||.||||||.|.||.||.|
Sbjct 1029  TGTTCTGCCATCCCTTACGGAAATTGACACTGTGGTCTTCATTTTTACCCTGGATGATAACCTCGCAGAAGTAC  1102

Query 1259  AGACTATAGTGGAGCAGGTGAAAGAGAAGACCAACCACATCCAGGCCCTGGCACACAGCACCGTGGGTCAGACC  1332
            ||.|..|.|..||...|||||..|||||||......|||||||||||||||..||||||||.|||||.|||.||
Sbjct 1103  AGGCCCTGGCAGAAAGGGTGAGGGAGAAGAGTTGGAACATCCAGGCCCTGGTGCACAGCACAGTGGGGCAGTCC  1176

Query 1333  TTGCCGATC-CCTCTGAAGAAGCTCTTTCCCTCCATCATCAGCATCACATGGCCACTGCTTTTCTTTGAATATG  1405
            ||||| |.| |||||.|||||||||||||||||..||||||||||||||||||||||.||||||||.||.||||
Sbjct 1177  TTGCC-AGCTCCTCTAAAGAAGCTCTTTCCCTCGCTCATCAGCATCACATGGCCACTTCTTTTCTTCGATTATG  1249

Query 1406  AAGGGAACTTCATCCAGAAGTTCCAGCGTGAGCTAAGCACCAAATGGGTGCTGAATACAGTGAGTACAGGTGCT  1479
            ||||||.||.|.|.||||||||||||||||||.||||||||||.||||||.||||||||||||||||.||.||.
Sbjct 1250  AAGGGAGCTACGTTCAGAAGTTCCAGCGTGAGTTAAGCACCAAGTGGGTGTTGAATACAGTGAGTACTGGGGCC  1323

Query 1480  CATGTGCTTCTTGGTAAGATCCTACAAAACCACATGTTGGACCTTCGGATTAGCAACTCCAAGCTCTTCTGGCG  1553
            ||||||||.||.||.|||||||||||.|||||||||.|||||||.||.||...|||||||||.|||||||||.|
Sbjct 1324  CATGTGCTGCTGGGGAAGATCCTACAGAACCACATGCTGGACCTCCGCATCGCCAACTCCAAACTCTTCTGGAG  1397

Query 1554  GGCGCTGGCCATGCTGCAGCGGTTCTCTGGACAGTCCAAGGCTCGATGCATCGAGAGCCTCCTCCGAGCGATCC  1627
            |||.|||||||||.|||||.|||||||.|||||||||||||||||.|||||.|||||.||.||.|.||.|||.|
Sbjct 1398  GGCACTGGCCATGTTGCAGAGGTTCTCAGGACAGTCCAAGGCTCGCTGCATTGAGAGTCTTCTTCAAGTGATAC  1471

Query 1628  ACTTTCCC-CAGCCACTGTCAGATGATATTCGGGCTGCTCCCATCTCCTGCCATGTCCAGGTTGCACATGAGAA  1700
            | |||||| ||.||.|||||..|||||.|.||.||.||.||||||||||||||||||||||||||.||.|||||
Sbjct 1472  A-TTTCCCTCAACCGCTGTCGAATGATGTCCGCGCGGCCCCCATCTCCTGCCATGTCCAGGTTGCCCACGAGAA  1544

Query 1701  GGAACAGGTGATACCCATCGCCTTGCTGAGCCTCCTATTCCGGTGCTCGATCACTGAGGCTCAGGCACACCTGG  1774
            ||||.|||||||.||||..|||||||||||.||||||.||.|||||||.||||||||||||.|||.||.|||||
Sbjct 1545  GGAAAAGGTGATCCCCACAGCCTTGCTGAGTCTCCTACTCAGGTGCTCCATCACTGAGGCTAAGGAACGCCTGG  1618

Query 1775  CTGCAGCTCCTTCTGTCTGTGAGGCTGTCAGGAGTGCTCTTGCTGGGCCAGGTCAGAAGCGCACTGCGGACCC-  1847
            ||||||||.||||.||||||||||.|||.|||||.||.||..||||||||||||||||.||||    |.|.|| 
Sbjct 1619  CTGCAGCTTCTTCAGTCTGTGAGGTTGTTAGGAGCGCCCTCTCTGGGCCAGGTCAGAAACGCA----GCATCCA  1688

Query 1848  --CC--TCGAGATCC--TAGAGCCTGACGTTCAG  1875
              ||  |.||||.||  |.|.|||.         
Sbjct 1689  AGCCTTTGGAGACCCTGTGGTGCCC---------  1713

GPP Web Portal Terms of Service

Effective Date: December 8, 2025
By using this site, you agree to our terms and conditions below.

Overview of Terms

The data made available on this website were generated for research purposes and are not intended for clinical or commercial uses. Commercial use (or other use for profit-making purposes) of the GPP Web Portal and its tools, is not permitted under these terms and may require a separate license agreement from Broad or its contributors. For more information, please contact partnering@broadinstitute.org.

The original data may be subject to rights claimed by third parties, including but not limited to, patent, copyright, other intellectual property rights, biodiversity-related access and benefit-sharing rights. It is the responsibility of users of Broad Institute services to ensure that their use of the data does not infringe any of the rights of such third parties.

Any questions or comments concerning these Terms of Use can be addressed to: legal@broadinstitute.org.

By accessing and viewing this GPP Web Portal, you agree to the following terms and conditions:

Attribution

You agree to acknowledge the Broad Institute (e.g., in publications, services or products) for any of your use of its online services, databases or software in accordance with good scientific practice. You agree to use the acknowledgment wording provided for the relevant tools as indicated on the FAQ for each tool.

Updating the Terms of Use

We reserve the right to update these Terms of Use at any time. When alterations are inevitable, we will attempt to give reasonable notice of any changes by placing a notice on our website, but you may wish to check each time you use the website. The date of the most recent revision will appear on this, the "GPP Web Portal Terms of Use" page. If you do not agree to these changes, please do not continue to use our online services. We will also make available an archived copy of the previous Terms of Use for comparison.

Indemnification and Disclaimer of Warranties

You are using this GPP Web Portal at your own risk, and you hereby agree to hold Broad and its contributors and their trustees, directors, officers, employees, and affiliated investigators harmless for any third party claims which may arise from your use of the GPP Web Portal, the tools available therein, or any portion thereof. Further, you agree to indemnify Broad, its contributors, and its and their trustees, directors, officers, employees, affiliated investigators, students, and affiliates for any loss, costs, claims, damages, or other liabilities arising from any unpermitted commercial or profit-making use you make of the GPP Web Portal. The GPP Web Portal is a research tool and is provided "as is". Broad does not represent that the GPP Web Portal is free of errors or bugs or suitable for any particular tasks.

ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS ARE DISCLAIMED. IN NO EVENT SHALL BROAD OR ITS CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THE GPP WEB PORTAL, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

Governing Law

The terms and conditions herein shall be construed, governed, interpreted, and applied in accordance with the internal laws of the Commonwealth of Massachusetts, U.S.A. Furthermore, by accessing, downloading, or using the Database, You consent to the personal jurisdiction of, and venue in, the state and federal courts within Massachusetts with respect to Your download or use of the Database.