Nucleotide Global Alignment
Description
- Query:
- TRCN0000466676
- Subject:
- XM_011524848.3
- Aligned Length:
- 5138
- Identities:
- 2104
- Gaps:
- 2788
Alignment
Query 1 ------------------------------------ATGTCTTGGCTGCGTTTCTGGGGCCCATGGCCCCTCCT 38
|||||..|||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTCTGCTCAGTGCCCGGCACTAGTGTGTGTCATGTCCCGGCTGCGTTTCTGGGGCCCATGGCCCCTCCT 74
Query 39 TACGTGGCAACTATTGTCTTTACTAGTCAAGGAGGCTCAGCCTCTGGTGTGGGTCAAGGACCCGCTCCAGCTGA 112
||.||||||||||||||...|||||||.|||||||||||||||||||.||||||||||||||||||||||||.|
Sbjct 75 TATGTGGCAACTATTGTGGCTACTAGTTAAGGAGGCTCAGCCTCTGGAGTGGGTCAAGGACCCGCTCCAGCTCA 148
Query 113 CCTCTAACCCCCTGGGGCCACCTGAGCCCTGGTCTTCCCGCTCCTCCCATCTCCCATGGGAATCTCCCCATGCA 186
|||||||.|||||||||||.|||||..||||||||||||.||||||||||.|||||.||||||||||||||||.
Sbjct 149 CCTCTAATCCCCTGGGGCCGCCTGACTCCTGGTCTTCCCACTCCTCCCATTTCCCACGGGAATCTCCCCATGCG 222
Query 187 CCTGCTCCCCCAGCAGCCCCGGGGGACTTTGATTACCTGGGGCCCTCTGCTTCTTCGCAGATGTCAGCCCTGCC 260
|||.|||.||||||||.||||.|||||||||||.|||||||||||||||||||.||..|||||.||||||..||
Sbjct 223 CCTACTCTCCCAGCAGACCCGTGGGACTTTGATCACCTGGGGCCCTCTGCTTCCTCAGAGATGCCAGCCCCACC 296
Query 261 TCAGGAACCAACTGAAAATTTGGCTCCATTCCTGAAGGAATTGGATTCAGCTGGAGAGCTGCCCCTGGGGCCAG 334
.||||||.|.|||||||||||||.||||||||||.|....|.|||||||||||||||||.||||||||.|||||
Sbjct 297 CCAGGAATCGACTGAAAATTTGGTTCCATTCCTGGACACCTGGGATTCAGCTGGAGAGCAGCCCCTGGAGCCAG 370
Query 335 AGCCGTTCTTGGCTGCACATCAGGACTTAAATGACAAGCGGACTCCAGAAGAAAGGCTCCCAGAGGTGGTTCCG 408
|||.||||||||||.||||.|||||.|||||.|||||||.||.||||.|.|||||.|||||
Sbjct 371 AGCAGTTCTTGGCTTCACAGCAGGATTTAAAGGACAAGCTGAGTCCACAGGAAAGACTCCC------------- 431
Query 409 CTTCTCAACCGGGATCAGAACCAGGCCCTAGTTCAGCTTCCTCGCCTCAAGTGGGTTCAAACTACAGATCTAGA 482
Sbjct 432 -------------------------------------------------------------------------- 431
Query 483 TCGGGCTGCAGGTCATCAGGCAGATGAAATACTTGTTCCACTAGACAGTAAGGTTTCAAGACCAACCAAATTTG 556
Sbjct 432 -------------------------------------------------------------------------- 431
Query 557 TTGTTTCGCCCAAGAACCTGAAGAAAGATCTAGCTGAACGTTGGAGCCTTCCTGAGATTGTTGGGATTCCACAC 630
|||||||||||||||.|||||||||||||.||||.|.||||||||||||.||||||||.||||.|||.|||.|
Sbjct 432 -TGTTTCGCCCAAGAAGCTGAAGAAAGATCCAGCTCAGCGTTGGAGCCTTGCTGAGATTATTGGAATTACACGC 504
Query 631 CAATTATCCAAACCTCAGCGTCAGAAACAGACTTTGCCAG-ATGATTATTTGAGTATGGACACACTGTATCCCG 703
||||||||||.|||||||.||||||||||||||||| ||| ||||.||||..||||..||.||||.||||||||
Sbjct 505 CAATTATCCACACCTCAGAGTCAGAAACAGACTTTG-CAGAATGAATATTCCAGTACAGATACACCGTATCCCG 577
Query 704 GCAGCCTACCTCCAGAACTCCGGGTGAACGCAGATGAGCCTCCAGGGCCTCCTGAGCAAGTTGGACTTTCTCAA 777
|.|||||.||||||||||||||||||||..|||||||||||||||||||..|||||||||||||||.|||||||
Sbjct 578 GTAGCCTGCCTCCAGAACTCCGGGTGAAGTCAGATGAGCCTCCAGGGCCCTCTGAGCAAGTTGGACCTTCTCAA 651
Query 778 TTCCATCTAGAGCCCAAAAGTCAAAATCCAGAGACCCTTGAAGACATCCAGTCCTCTTCACTCCAGGAAGAAGC 851
|||||||||||||||.|||.||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct 652 TTCCATCTAGAGCCCGAAACTCAAAATCCAGAGACCCTTGAAGACATCCAGTCCTCTTCACTCCAGCAAGAAGC 725
Query 852 CCCAGCGCAGCTTCTACAGCTCCCTCAGGAGGTAGAAC---CTTCAACCCAGCAGGAGGCCCCAGCTCTGCCTC 922
||||||.|||||||.||||||||.| ||||.||||| ||||||..|||||||||||||||||||||||||
Sbjct 726 CCCAGCACAGCTTCCACAGCTCCTT---GAGGAAGAACCTTCTTCAATGCAGCAGGAGGCCCCAGCTCTGCCTC 796
Query 923 CAGAGTCCTCTATGGAGAGTCTAGCTCAAACTCCACTGAATCATGAAGTGACAGTTCAACCTCCAGGTGAGGAT 996
|||||||||||||||||||||| |||||.||.|||||||||.|||.|||||||||||||||||||||||
Sbjct 797 CAGAGTCCTCTATGGAGAGTCT------AACTCTACCGAATCATGAGGTGTCAGTTCAACCTCCAGGTGAGGAT 864
Query 997 CAAGCTCATTATAATTTGCCCAAGTTTACAGTCAAACCTGCAGATGTGGAGGTTACCATGACTTCAGAGCCTAA 1070
||||||.|||||.|.||||||||..|||||||.||||||||||||||||||||||||||.|||||||||||||.
Sbjct 865 CAAGCTTATTATCACTTGCCCAACATTACAGTTAAACCTGCAGATGTGGAGGTTACCATAACTTCAGAGCCTAC 938
Query 1071 AAATGAGACAGAATCTACCCAAGCCCAGCAGGAGGCCCCAATTCAGCCTCCCGAGGAGGCGGAACCTT------ 1138
.|||||||||||||||.|||||||||||||||||.|||||||||||..|||.|||||||.||||||||
Sbjct 939 CAATGAGACAGAATCTTCCCAAGCCCAGCAGGAGACCCCAATTCAGTTTCCAGAGGAGGTGGAACCTTCTGCAA 1012
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1013 CCCAACAGGAGGCCCCAATTGAGCCTCCAGTTCCTCCTATGGAGCATGAACTTTCCATCAGTGAGCAGCAGCAG 1086
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1087 CCAGTTCAGCCTTCTGAGTCTCCTAGGGAGGTCGAATCTTCTCCGACCCAGCAGGAGACCCCAGGTCAGCCTCC 1160
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1161 AGAACATCATGAAGTCACAGTTTCACCTCCAGGTCACCATCAAACTCATCATTTAGCTTCACCCAGTGTCTCTG 1234
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1235 TGAAGCCTCCAGACGTGCAGCTCACCATAGCAGCAGAGCCTAGTGCAGAGGTGGGAACTTCTCTAGTCCACCAG 1308
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1309 GAGGCTACAACTCGGCTCTCAGGGTCAGGTAATGATGTAGAACCTCCCGCCATCCAGCACGGGGGCCCACCTCT 1382
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1383 GCTTCCAGAGTCATCAGAAGAAGCTGGACCTTTAGCAGTTCAACAGGAGACTTCATTTCAATCTCCGGAACCTA 1456
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1457 TTAATAATGAGAACCCCTCTCCAACCCAGCAGGAGGCTGCAGCTGAGCATCCACAGACCGCTGAGGAGGGTGAG 1530
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1531 TCTTCCCTAACCCATCAGGAGGCCCCAGCTCAGACTCCAGAGTTCCCTAATGTAGTTGTAGCTCAACCTCCAGA 1604
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1605 GCATTCACACCTGACTCAAGCCACAGTTCAACCTTTGGATCTGGGGTTTACCATCACTCCAGAATCCAAGACAG 1678
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1679 AGGTTGAACTTTCTCCAACCATGAAGGAGACCCCAACTCAGCCTCCTAAGAAAGTTGTACCCCAACTTCGAGTA 1752
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1753 TATCAAGGGGTAACAAATCCAACACCAGGTCAGGATCAAGCTCAGCATCCAGTGTCACCCAGCGTTACAGTTCA 1826
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1827 ACTTTTGGACCTGGGACTTACCATCACTCCAGAACCTACTACGGAGGTTGGACATTCTACACCCCCGAAGAGGA 1900
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1901 CTATAGTTTCTCCAAAGCATCCTGAGGTGACACTTCCACATCCAGACCAGGTTCAGACTCAGCATTCACACCTG 1974
Query 1139 ----------------------------------------------------------------------CTTC 1142
||||
Sbjct 1975 ACTCGAGCCACAGTTCAACCTTTGGACCTGGGGTTTACCATCACTCCAAAATCCATGACAGAGGTTGAACCTTC 2048
Query 1143 TACAGCCCTGAGGACTACAGATCCTCCTCCAGAACACCCTGAGGTGACACTTCCACCTTCAGACAAGGGTCAGG 1216
|||||||||||.||||||||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 2049 TACAGCCCTGATGACTACAGCTCCTCCTCCAGGACACCCTGAGGTGACACTTCCACCTTCAGACAAGGGTCAGG 2122
Query 1217 CTCAGCATTCACACCTGACTGAAGCCACAGTTCAACCTCTGGACCTGGAGCTTAGCATAACTACAGAGCCTACT 1290
||||||||||||||||||||.|||||||.|||||||||||||||||||||||||.||||||||||.|.||||||
Sbjct 2123 CTCAGCATTCACACCTGACTCAAGCCACCGTTCAACCTCTGGACCTGGAGCTTACCATAACTACAAAACCTACT 2196
Query 1291 ACAGAGGTTAAACCGTCTCCAACCACGGAGGAAACCTCAGCTCAGCCTCCAGACCCGGGGCTTGCCATAACTCC 1364
||||||||||||||.|||||||||||||||||.||||||.|||||||||||||||.|||.||||||||.|.|||
Sbjct 2197 ACAGAGGTTAAACCATCTCCAACCACGGAGGAGACCTCAACTCAGCCTCCAGACCTGGGACTTGCCATCATTCC 2270
Query 1365 AGAACCCACTACAGAGATTGGACATTCCACAGCCCTGGAGAAGACTAGAGCTCCTCATCCAGACCAGGTTCAGA 1438
|||||||||||||||||.|.|||||||.|||||||||||||||||||.||||||||.||||||||.||||||||
Sbjct 2271 AGAACCCACTACAGAGACTAGACATTCTACAGCCCTGGAGAAGACTACAGCTCCTCGTCCAGACCGGGTTCAGA 2344
Query 1439 CTCTGCATCGAAGCCTGACTGAAGTCACAGGTCCACCTACAAAGTTAGAATCTTCGCAGGATTCATTGGTGCAG 1512
||||||||||||||||||||||||||||||||||||||||..|..|||||.||.|.|||||||||.||||||||
Sbjct 2345 CTCTGCATCGAAGCCTGACTGAAGTCACAGGTCCACCTACTGAACTAGAACCTGCTCAGGATTCACTGGTGCAG 2418
Query 1513 TCTGA------------------------AACTGCACCAGAGGAACAGAAGGCCTCCACAAGCACCAACATATG 1562
||||| ||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 2419 TCTGAAAGTTACACCCAAAATAAGGCTTTAACTGCACCAGAGGAACACAAGGCCTCCACAAGCACCAACATATG 2492
Query 1563 TGAGCTCTGCACCTGCGGAGATGAGACTCTGTCATGTGTTGGTCTCAGCCCAAAGCAGAGGCTCCGCCAAGTGC 1636
|||||||||.||||||||||||||||...||||||||.|||.|||||.||||.|||||||||||||||||||||
Sbjct 2493 TGAGCTCTGTACCTGCGGAGATGAGATGTTGTCATGTATTGATCTCAACCCAGAGCAGAGGCTCCGCCAAGTGC 2566
Query 1637 CTGTGCCAGAGCCCGACACCTACAATGGCATCTTCACCACCTTAAATTTCCAAGGAAACTATATTTCATACCTT 1710
||||||||||||||.|||||.|||||||||.||||||||.|||||||||||||||||||||||||||.|||.||
Sbjct 2567 CTGTGCCAGAGCCCAACACCCACAATGGCACCTTCACCATCTTAAATTTCCAAGGAAACTATATTTCTTACATT 2640
Query 1711 GATGGAAATGTATGGAAAGCATACAGTTGGACCGAGAAACTAATTCTCAGTGAAAATTATTTGACTGAATTACC 1784
||||||||||||||||||||||||||||||||||||||||||||||||||.||||||.|.|||||||||||||.
Sbjct 2641 GATGGAAATGTATGGAAAGCATACAGTTGGACCGAGAAACTAATTCTCAGAGAAAATAACTTGACTGAATTACA 2714
Query 1785 TAAGGATTCATTTGAAGGCCTGCTATACCTCCAGTATTTAATTCTCAATCGCAATCCTCTGACTACTGTCGAAG 1858
.|||||||||||||||||||||||||.|||||||||||
Sbjct 2715 CAAGGATTCATTTGAAGGCCTGCTATCCCTCCAGTATT------------------------------------ 2752
Query 1859 ATCCATATCTCTTTGAACTGCCGGCATTAAAATATCTAGACATGGGAACAACACACATCACACTTACAACACTT 1932
Sbjct 2753 -------------------------------------------------------------------------- 2752
Query 1933 AAGAACATTCTCACGATGACTGTTGAACTGGAAAAACTGATCTTACCTAGCCATATGGCCTGCTGCCTCTGCCA 2006
|||||||||||||||||||||||||||||||||||||
Sbjct 2753 -------------------------------------TGATCTTACCTAGCCATATGGCCTGCTGCCTCTGCCA 2789
Query 2007 ATTTAAAAATAGCATTGAGGCTGTCTGCAAGACAGTCAAGCTGCATTGCAACACTGCATGTCTGACTAACAGCA 2080
|||||||||.|||||||||||||||||||||||||||||||||||||||||||.||||||||||||.||||.||
Sbjct 2790 ATTTAAAAACAGCATTGAGGCTGTCTGCAAGACAGTCAAGCTGCATTGCAACAGTGCATGTCTGACAAACACCA 2863
Query 2081 TACATTGTCCTGAAGAAGCATCTGTAGGGAATCCAGAAGGAGCGTTCATGAAGATGTTACAAGCCCGGAAGCAG 2154
.|||||||||||||||||||||.||||||||||||||||||||||||||||||.|||||||||||||||||.|.
Sbjct 2864 CACATTGTCCTGAAGAAGCATCGGTAGGGAATCCAGAAGGAGCGTTCATGAAGGTGTTACAAGCCCGGAAGAAC 2937
Query 2155 CACATGAGCACTCAGCTGACTATTGAGTCGGAGGCGCCCTCAGACAGCAGTGGCATCAACTTGTCAGGCTTTGG 2228
.|||..||||||.||||||.|.|||||.|.||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 2938 TACACAAGCACTGAGCTGATTGTTGAGCCAGAGGAGCCCTCAGACAGCAGTGGCATCAACTTGTCAGGCTTTGG 3011
Query 2229 G------------------------------------------------------------------------- 2229
|
Sbjct 3012 GAGTGAGCAGCTAGACACCAATGACGAGAGTGATTTTATCAGTACACTAAGTTACATCTTGCCTTATTTCTCAG 3085
Query 2230 -------------------------------------------------------------------------- 2229
Sbjct 3086 CGGTAAACCTAGATGTGAAATCACTGTTACTACCGTTCATTAAACTGCCAACCACAGGAAACAGCCTGGCAAAG 3159
Query 2230 -------------------------------------------------------------------------- 2229
Sbjct 3160 ATTCAAACTGTAGGCCAAAACCGGCAGAGAGTGAAGAGAGTCCTCATGGGCCCAAGGAGCATCCAGAAAAGGCA 3233
Query 2230 -------------------------------------------------------------------------- 2229
Sbjct 3234 CTTCAAAGAGGTAGGAAGGCAGAGCATCAGGAGGGAACAGGGTGCCCAGGCATCTGTGGAGAACGCTGCCGAAG 3307
Query 2230 -------------------------------------------------------------------------- 2229
Sbjct 3308 AAAAAAGGCTCGGGAGTCCAGCCCCAAGGGAGGTGGAACAGCCCCACACACAGCAGGGGCCTGAGAAGTTAGCG 3381
Query 2230 -------------------------------------------------------------------------- 2229
Sbjct 3382 GGAAACGCCGTCTACACCAAGCCTTCCTTCACCCAAGAGCATAAGGCAGCAGTCTCTGTGCTGAAACCCTTCTC 3455
Query 2230 -------------------------------------------------------------------------- 2229
Sbjct 3456 CAAGGGCGCGCCTTCTACCTCCAGCCCTGCAAAAGCCCTACCACAGGTGAGAGACAGATGGAAAGACTTAACCC 3529
Query 2230 -------------------------------------------------------------------------- 2229
Sbjct 3530 ACGCTATTTCCATTTTAGAAAGTGCAAAGGCTAGAGTTACAAATACGAAGACGTCTAAACCAATCGTACATGCC 3603
Query 2230 -------------------------------------------------------------------------- 2229
Sbjct 3604 AGAAAAAAATACCGCTTTCACAAAACTCGCTCCCACGTGACCCACAGAACACCCAAAGTCAAAAAGAGTCCAAA 3677
Query 2230 -------------------------------------------------------------------------- 2229
Sbjct 3678 GGTCAGAAAGAAAAGTTATCTGAGTAGACTGATGCTCGCAAACAGGCTTCCATTCTCTGCAGCGAAGAGCCTCA 3751
Query 2230 -------------------------------------------------------------------------- 2229
Sbjct 3752 TAAATTCCCCTTCACAAGGGGCTTTTTCATCCTTAGGAGACCTGAGTCCTCAAGAAAACCCTTTTCTGGAAGTA 3825
Query 2230 -------------------------------------------------------------------------- 2229
Sbjct 3826 TCTGCTCCTTCAGAACATTTTATAGAAAACAATAATACAAAACACACAACTGCAAGAAATGCCTTTGAAGAAAA 3899
Query 2230 -------------------------------------------------------------------------- 2229
Sbjct 3900 TGATTTTATGGAAAACACTAACATGCCAGAAGGAACCATCTCTGAAAACACAAACTACAATCATCCTCATGAGG 3973
Query 2230 -------------------------------------------------------------------------- 2229
Sbjct 3974 CAGATTCCGCTGGGACTGCATTCAACTTAGGGCCAACTGTTAAACAAACTGAGACAAAATGGGAATACAACAAC 4047
Query 2230 ------------------------------------------------------------GGTGATCAGCTTGA 2243
|||||||||.||||
Sbjct 4048 GTGGGCACTGACCTGTCCCCCGAGCCCAAAAGCTTCAATTACCCATTGCTCTCGTCCCCAGGTGATCAGTTTGA 4121
Query 2244 AATTCAGCTAACCGAGCAGCTACGGTCCCTCATCCCCAACGAGGATGTGAGAAAGTTCATGTCTCATGTTATCC 2317
|||||||||||||.|||||||||.||||||.|||||||||.|..|||||||||.|.||||..||||||||||||
Sbjct 4122 AATTCAGCTAACCCAGCAGCTACAGTCCCTTATCCCCAACAACAATGTGAGAAGGCTCATTGCTCATGTTATCC 4195
Query 2318 GGACCTTGAAAATGGAATGTTCAGAAACACATGTGCAAGGGAGCTGTGCCAAGCTCATGTTGCGAACAGGCCTC 2391
||||||||||.|||||.||.||.|...|.||||||||||.||.|||||||||||||||.|...|.|||||||.|
Sbjct 4196 GGACCTTGAAGATGGACTGCTCTGGGGCCCATGTGCAAGTGACCTGTGCCAAGCTCATCTCCAGGACAGGCCAC 4269
Query 2392 CTGATGAAGCTTCTCAGCGAGCAGCAGGAAGCAAAGGCATTGAATGTAGAATGGGATACGGACCAACAAAA--- 2462
|||||||||||||||||.|.|||||||||||.||||||||..||..||||||||||||||||||||...||
Sbjct 4270 CTGATGAAGCTTCTCAGTGGGCAGCAGGAAGTAAAGGCATCCAAGATAGAATGGGATACGGACCAATGGAAGAT 4343
Query 2463 ----AACAAATTATATTAATGAGAACATGGAA---CAGAATGAACAGAAAGAGCAGAAGTCAAGTGAGCTCATG 2529
||| ||.||||||||||.||..||| ||||.||||||||||| |||||||...||||||||..
Sbjct 4344 TGAGAAC----TACATTAATGAGAGCACAGAAGCCCAGAGTGAACAGAAAG---AGAAGTCGCTTGAGCTCAAA 4410
Query 2530 AAAGAAGTTCCAGGAGATGACTATAAGAACAAACTCATCTTCGCAATATCTGTGACTGTAATACTAATAATTTT 2603
|||||||||||||||.|||.|||||...|||||||||||||.|||.||..|||.||||.||||||||..|||||
Sbjct 4411 AAAGAAGTTCCAGGATATGGCTATACTGACAAACTCATCTTGGCATTAATTGTTACTGGAATACTAACGATTTT 4484
Query 2604 GATTATAATTTTTTGTCTTATAGAGGTGA-AT----TCACATAAAAGGGCATCAGAAAAATACAAAGACAACCC 2672
|||||||.||||.||.||.|| .|||| || |||| ..||||.|||.|.||.||.|..||||
Sbjct 4485 GATTATACTTTTCTGCCTCAT---TGTGATATGTTGTCAC--CGAAGGTCATTACAAGAAGATGAAGA------ 4547
Query 2673 A------TCAA-------TATCAGGA-----GCC---------------------------------------- 2688
| |||| |.||| || |||
Sbjct 4548 AGGATTCTCAAGGGGCATTTTCA-GATTTCTGCCATGGAGGGGATGCTCTTCGCGAAGGGAGAGTCAGGATGGA 4620
Query 2689 -------------------------------------------------------------------------- 2688
Sbjct 4621 CTTTCCTCATTTGGACAGCCGCTCTGGTTTAAAGATATGTACAAACCTCTCAGTGCCACAAGAATAAATAATCA 4694
Query 2689 -------------------------------------------------------------------------- 2688
Sbjct 4695 TGCATGGAAGCTGCACAAGAAGTCATCTAATGAGGACAAGATCCTCAACAGGGACCCTGGGGACAGCGAAGCCC 4768
Query 2689 -------------------------------- 2688
Sbjct 4769 CAACGGAGGAGGAGGAGAGTGAAGCCCTGCCA 4800