Construct: ORF TRCN0000466676
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009400.1_s317c1
- Derived from:
- ccsbBroadEn_13034
- DNA Barcode:
- ACGATCGTGATATACAATGGCACG
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LRRC37B (114659)
Vector Information:
- Vector Backbone:
- pLX_317
- Pol II Cassette 1:
- SV40-PuroR
- Pol II Cassette 2:
- EF1a-TRCN0000466676
- Selection Marker:
- PuroR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 114659 | LRRC37B | leucine rich repeat contain... | NM_052888.3 | 94.6% | 94.6% | 1822_1974del |
| 2 | human | 114659 | LRRC37B | leucine rich repeat contain... | NM_001321350.2 | 85.9% | 85.9% | 0_1ins246;1576_1728del |
| 3 | human | 374819 | LRRC37A3 | leucine rich repeat contain... | NM_199340.4 | 44.1% | 39% | (many diffs) |
| 4 | human | 474170 | LRRC37A2 | leucine rich repeat contain... | XM_024450773.1 | 43.6% | 39.1% | (many diffs) |
| 5 | human | 474170 | LRRC37A2 | leucine rich repeat contain... | XM_011524844.3 | 43.5% | 38.6% | (many diffs) |
| 6 | human | 474170 | LRRC37A2 | leucine rich repeat contain... | XM_024450774.1 | 43% | 38.8% | (many diffs) |
| 7 | human | 474170 | LRRC37A2 | leucine rich repeat contain... | XM_011524841.3 | 42.8% | 38% | (many diffs) |
| 8 | human | 474170 | LRRC37A2 | leucine rich repeat contain... | XM_011524842.3 | 42.8% | 36.1% | (many diffs) |
| 9 | human | 474170 | LRRC37A2 | leucine rich repeat contain... | XM_011524843.3 | 42.4% | 36.8% | (many diffs) |
| 10 | human | 9884 | LRRC37A | leucine rich repeat contain... | NM_014834.4 | 42.3% | 37.6% | (many diffs) |
| 11 | human | 474170 | LRRC37A2 | leucine rich repeat contain... | XM_011524850.3 | 42.3% | 36.4% | (many diffs) |
| 12 | human | 474170 | LRRC37A2 | leucine rich repeat contain... | NM_001006607.2 | 42.2% | 37.5% | (many diffs) |
| 13 | human | 474170 | LRRC37A2 | leucine rich repeat contain... | XM_011524846.3 | 42.2% | 37.4% | (many diffs) |
| 14 | human | 474170 | LRRC37A2 | leucine rich repeat contain... | XM_011524849.2 | 41.3% | 37.3% | (many diffs) |
| 15 | human | 474170 | LRRC37A2 | leucine rich repeat contain... | XM_024450775.1 | 41.3% | 37.2% | (many diffs) |
| 16 | human | 474170 | LRRC37A2 | leucine rich repeat contain... | XM_011524848.3 | 40.9% | 36.1% | (many diffs) |
| 17 | human | 387646 | LRRC37A6P | leucine rich repeat contain... | NR_003525.2 | 36.9% | (many diffs) | |
| 18 | human | 55073 | LRRC37A4P | leucine rich repeat contain... | XR_002958879.1 | 30% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 2757
- ORF length:
- 2688
- Sequence:
-
1 tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag 61 ttggcaccat gtcttggctg cgtttctggg gcccatggcc cctccttacg tggcaactat 121 tgtctttact agtcaaggag gctcagcctc tggtgtgggt caaggacccg ctccagctga 181 cctctaaccc cctggggcca cctgagccct ggtcttcccg ctcctcccat ctcccatggg 241 aatctcccca tgcacctgct cccccagcag ccccggggga ctttgattac ctggggccct 301 ctgcttcttc gcagatgtca gccctgcctc aggaaccaac tgaaaatttg gctccattcc 361 tgaaggaatt ggattcagct ggagagctgc ccctggggcc agagccgttc ttggctgcac 421 atcaggactt aaatgacaag cggactccag aagaaaggct cccagaggtg gttccgcttc 481 tcaaccggga tcagaaccag gccctagttc agcttcctcg cctcaagtgg gttcaaacta 541 cagatctaga tcgggctgca ggtcatcagg cagatgaaat acttgttcca ctagacagta 601 aggtttcaag accaaccaaa tttgttgttt cgcccaagaa cctgaagaaa gatctagctg 661 aacgttggag ccttcctgag attgttggga ttccacacca attatccaaa cctcagcgtc 721 agaaacagac tttgccagat gattatttga gtatggacac actgtatccc ggcagcctac 781 ctccagaact ccgggtgaac gcagatgagc ctccagggcc tcctgagcaa gttggacttt 841 ctcaattcca tctagagccc aaaagtcaaa atccagagac ccttgaagac atccagtcct 901 cttcactcca ggaagaagcc ccagcgcagc ttctacagct ccctcaggag gtagaacctt 961 caacccagca ggaggcccca gctctgcctc cagagtcctc tatggagagt ctagctcaaa 1021 ctccactgaa tcatgaagtg acagttcaac ctccaggtga ggatcaagct cattataatt 1081 tgcccaagtt tacagtcaaa cctgcagatg tggaggttac catgacttca gagcctaaaa 1141 atgagacaga atctacccaa gcccagcagg aggccccaat tcagcctccc gaggaggcgg 1201 aaccttcttc tacagccctg aggactacag atcctcctcc agaacaccct gaggtgacac 1261 ttccaccttc agacaagggt caggctcagc attcacacct gactgaagcc acagttcaac 1321 ctctggacct ggagcttagc ataactacag agcctactac agaggttaaa ccgtctccaa 1381 ccacggagga aacctcagct cagcctccag acccggggct tgccataact ccagaaccca 1441 ctacagagat tggacattcc acagccctgg agaagactag agctcctcat ccagaccagg 1501 ttcagactct gcatcgaagc ctgactgaag tcacaggtcc acctacaaag ttagaatctt 1561 cgcaggattc attggtgcag tctgaaactg caccagagga acagaaggcc tccacaagca 1621 ccaacatatg tgagctctgc acctgcggag atgagactct gtcatgtgtt ggtctcagcc 1681 caaagcagag gctccgccaa gtgcctgtgc cagagcccga cacctacaat ggcatcttca 1741 ccaccttaaa tttccaagga aactatattt cataccttga tggaaatgta tggaaagcat 1801 acagttggac cgagaaacta attctcagtg aaaattattt gactgaatta cctaaggatt 1861 catttgaagg cctgctatac ctccagtatt taattctcaa tcgcaatcct ctgactactg 1921 tcgaagatcc atatctcttt gaactgccgg cattaaaata tctagacatg ggaacaacac 1981 acatcacact tacaacactt aagaacattc tcacgatgac tgttgaactg gaaaaactga 2041 tcttacctag ccatatggcc tgctgcctct gccaatttaa aaatagcatt gaggctgtct 2101 gcaagacagt caagctgcat tgcaacactg catgtctgac taacagcata cattgtcctg 2161 aagaagcatc tgtagggaat ccagaaggag cgttcatgaa gatgttacaa gcccggaagc 2221 agcacatgag cactcagctg actattgagt cggaggcgcc ctcagacagc agtggcatca 2281 acttgtcagg ctttgggggt gatcagcttg aaattcagct aaccgagcag ctacggtccc 2341 TCATCCCCAA CGAGGATGTG AGAAAGTTCA TGTCTCATGT TATCCGGACC TTGAAAATGG 2401 AATGTTCAGA AACACATGTG CAAGGGAGCT GTGCCAAGCT CATGTTGCGA ACAGGCCTCC 2461 TGATGAAGCT TCTCAGCGAG CAGCAGGAAG CAAAGGCATT GAATGTAGAA TGGGATACGG 2521 ACCAACAAAA AACAAATTAT ATTAATGAGA ACATGGAACA GAATGAACAG AAAGAGCAGA 2581 AGTCAAGTGA GCTCATGAAA GAAGTTCCAG GAGATGACTA TAAGAACAAA CTCATCTTCG 2641 CAATATCTGT GACTGTAATA CTAATAATTT TGATTATAAT TTTTTGTCTT ATAGAGGTGA 2701 ATTCACATAA AAGGGCATCA GAAAAATACA AAGACAACCC ATCAATATCA GGAGCCTTGC 2761 CAACTTTCTT GTACAAAGTG GTTGATATCG GTAAGCCTAT CCCTAACCCT CTCCTCGGTC 2821 TCGATTCTAC GTAGTAATGA ACTAGTCCGT AACTTGAAAG TATTTCGATT TCTTGGCTTT 2881 ATATATCTTG TGGAAAGGAC GAACGATCGT GATATACAAT GGCACGACGC GTTAAGTCga 2941 caatcaacct ctggattaca aaatttgtga aagatt