Nucleotide Global Alignment
Description
- Query:
- TRCN0000466676
- Subject:
- XM_011524850.3
- Aligned Length:
- 3804
- Identities:
- 1611
- Gaps:
- 2013
Alignment
Query 1 ------------------------------------ATGTCTTGGCTGCGTTTCTGGGGCCCATGGCCCCTCCT 38
|||||..|||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTTCTGCTCAGTGCCCGGCACTAGTGTGTGTCATGTCCCGGCTGCGTTTCTGGGGCCCATGGCCCCTCCT 74
Query 39 TACGTGGCAACTATTGTCTTTACTAGTCAAGGAGGCTCAGCCTCTGGTGTGGGTCAAGGACCCGCTCCAGCTGA 112
||.||||||||||||||...|||||||.|||||||||||||||||||.||||||||||||||||||||||||.|
Sbjct 75 TATGTGGCAACTATTGTGGCTACTAGTTAAGGAGGCTCAGCCTCTGGAGTGGGTCAAGGACCCGCTCCAGCTCA 148
Query 113 CCTCTAACCCCCTGGGGCCACCTGAGCCCTGGTCTTCCCGCTCCTCCCATCTCCCATGGGAATCTCCCCATGCA 186
|||||||.|||||||||||.|||||..||||||||||||.||||||||||.|||||.||||||||||||||||.
Sbjct 149 CCTCTAATCCCCTGGGGCCGCCTGACTCCTGGTCTTCCCACTCCTCCCATTTCCCACGGGAATCTCCCCATGCG 222
Query 187 CCTGCTCCCCCAGCAGCCCCGGGGGACTTTGATTACCTGGGGCCCTCTGCTTCTTCGCAGATGTCAGCCCTGCC 260
|||.|||.||||||||.||||.|||||||||||.|||||||||||||||||||.||..|||||.||||||..||
Sbjct 223 CCTACTCTCCCAGCAGACCCGTGGGACTTTGATCACCTGGGGCCCTCTGCTTCCTCAGAGATGCCAGCCCCACC 296
Query 261 TCAGGAACCAACTGAAAATTTGGCTCCATTCCTGAAGGAATTGGATTCAGCTGGAGAGCTGCCCCTGGGGCCAG 334
.||||||.|.|||||||||||||.||||||||||.|....|.|||||||||||||||||.||||||||.|||||
Sbjct 297 CCAGGAATCGACTGAAAATTTGGTTCCATTCCTGGACACCTGGGATTCAGCTGGAGAGCAGCCCCTGGAGCCAG 370
Query 335 AGCCGTTCTTGGCTGCACATCAGGACTTAAATGACAAGCGGACTCCAGAAGAAAGGCTCCCAGAGGTGGTTCCG 408
|||.||||||||||.||||.|||||.|||||.|||||||.||.||||.|.|||||.|||||
Sbjct 371 AGCAGTTCTTGGCTTCACAGCAGGATTTAAAGGACAAGCTGAGTCCACAGGAAAGACTCCC------------- 431
Query 409 CTTCTCAACCGGGATCAGAACCAGGCCCTAGTTCAGCTTCCTCGCCTCAAGTGGGTTCAAACTACAGATCTAGA 482
Sbjct 432 -------------------------------------------------------------------------- 431
Query 483 TCGGGCTGCAGGTCATCAGGCAGATGAAATACTTGTTCCACTAGACAGTAAGGTTTCAAGACCAACCAAATTTG 556
Sbjct 432 -------------------------------------------------------------------------- 431
Query 557 TTGTTTCGCCCAAGAACCTGAAGAAAGATCTAGCTGAACGTTGGAGCCTTCCTGAGATTGTTGGGATTCCACAC 630
|||||||||||||||.|||||||||||||.||||.|.||||||||||||.||||||||.||||.|||.|||.|
Sbjct 432 -TGTTTCGCCCAAGAAGCTGAAGAAAGATCCAGCTCAGCGTTGGAGCCTTGCTGAGATTATTGGAATTACACGC 504
Query 631 CAATTATCCAAACCTCAGCGTCAGAAACAGACTTTGCCAG-ATGATTATTTGAGTATGGACACACTGTATCCCG 703
||||||||||.|||||||.||||||||||||||||| ||| ||||.||||..||||..||.||||.||||||||
Sbjct 505 CAATTATCCACACCTCAGAGTCAGAAACAGACTTTG-CAGAATGAATATTCCAGTACAGATACACCGTATCCCG 577
Query 704 GCAGCCTACCTCCAGAACTCCGGGTGAACGCAGATGAGCCTCCAGGGCCTCCTGAGCAAGTTGGACTTTCTCAA 777
|.|||||.||||||||||||||||||||..|||||||||||||||||||..|||||||||||||||.|||||||
Sbjct 578 GTAGCCTGCCTCCAGAACTCCGGGTGAAGTCAGATGAGCCTCCAGGGCCCTCTGAGCAAGTTGGACCTTCTCAA 651
Query 778 TTCCATCTAGAGCCCAAAAGTCAAAATCCAGAGACCCTTGAAGACATCCAGTCCTCTTCACTCCAGGAAGAAGC 851
|||||||||||||||.|||.||||||||||||||||||||||||||||||||||||||||||||||.|||||||
Sbjct 652 TTCCATCTAGAGCCCGAAACTCAAAATCCAGAGACCCTTGAAGACATCCAGTCCTCTTCACTCCAGCAAGAAGC 725
Query 852 CCCAGCGCAGCTTCTACAGCTCCCTCAGGAGGTAGAAC---CTTCAACCCAGCAGGAGGCCCCAGCTCTGCCTC 922
||||||.|||||||.||||||||.| ||||.||||| ||||||..|||||||||||||||||||||||||
Sbjct 726 CCCAGCACAGCTTCCACAGCTCCTT---GAGGAAGAACCTTCTTCAATGCAGCAGGAGGCCCCAGCTCTGCCTC 796
Query 923 CAGAGTCCTCTATGGAGAGTCTAGCTCAAACTCCACTGAATCATGAAGTGACAGTTCAACCTCCAGGTGAGGAT 996
|||||||||||||||||||||| |||||.||.|||||||||.|||.|||||||||||||||||||||||
Sbjct 797 CAGAGTCCTCTATGGAGAGTCT------AACTCTACCGAATCATGAGGTGTCAGTTCAACCTCCAGGTGAGGAT 864
Query 997 CAAGCTCATTATAATTTGCCCAAGTTTACAGTCAAACCTGCAGATGTGGAGGTTACCATGACTTCAGAGCCTAA 1070
||||||.|||||.|.||||||||..|||||||.||||||||||||||||||||||||||.|||||||||||||.
Sbjct 865 CAAGCTTATTATCACTTGCCCAACATTACAGTTAAACCTGCAGATGTGGAGGTTACCATAACTTCAGAGCCTAC 938
Query 1071 AAATGAGACAGAATCTACCCAAGCCCAGCAGGAGGCCCCAATTCAGCCTCCCGAGGAGGCGGAACCTT------ 1138
.|||||||||||||||.|||||||||||||||||.|||||||||||..|||.|||||||.||||||||
Sbjct 939 CAATGAGACAGAATCTTCCCAAGCCCAGCAGGAGACCCCAATTCAGTTTCCAGAGGAGGTGGAACCTTCTGCAA 1012
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1013 CCCAACAGGAGGCCCCAATTGAGCCTCCAGTTCCTCCTATGGAGCATGAACTTTCCATCAGTGAGCAGCAGCAG 1086
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1087 CCAGTTCAGCCTTCTGAGTCTCCTAGGGAGGTCGAATCTTCTCCGACCCAGCAGGAGACCCCAGGTCAGCCTCC 1160
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1161 AGAACATCATGAAGTCACAGTTTCACCTCCAGGTCACCATCAAACTCATCATTTAGCTTCACCCAGTGTCTCTG 1234
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1235 TGAAGCCTCCAGACGTGCAGCTCACCATAGCAGCAGAGCCTAGTGCAGAGGTGGGAACTTCTCTAGTCCACCAG 1308
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1309 GAGGCTACAACTCGGCTCTCAGGGTCAGGTAATGATGTAGAACCTCCCGCCATCCAGCACGGGGGCCCACCTCT 1382
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1383 GCTTCCAGAGTCATCAGAAGAAGCTGGACCTTTAGCAGTTCAACAGGAGACTTCATTTCAATCTCCGGAACCTA 1456
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1457 TTAATAATGAGAACCCCTCTCCAACCCAGCAGGAGGCTGCAGCTGAGCATCCACAGACCGCTGAGGAGGGTGAG 1530
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1531 TCTTCCCTAACCCATCAGGAGGCCCCAGCTCAGACTCCAGAGTTCCCTAATGTAGTTGTAGCTCAACCTCCAGA 1604
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1605 GCATTCACACCTGACTCAAGCCACAGTTCAACCTTTGGATCTGGGGTTTACCATCACTCCAGAATCCAAGACAG 1678
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1679 AGGTTGAACTTTCTCCAACCATGAAGGAGACCCCAACTCAGCCTCCTAAGAAAGTTGTACCCCAACTTCGAGTA 1752
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1753 TATCAAGGGGTAACAAATCCAACACCAGGTCAGGATCAAGCTCAGCATCCAGTGTCACCCAGCGTTACAGTTCA 1826
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1827 ACTTTTGGACCTGGGACTTACCATCACTCCAGAACCTACTACGGAGGTTGGACATTCTACACCCCCGAAGAGGA 1900
Query 1139 -------------------------------------------------------------------------- 1138
Sbjct 1901 CTATAGTTTCTCCAAAGCATCCTGAGGTGACACTTCCACATCCAGACCAGGTTCAGACTCAGCATTCACACCTG 1974
Query 1139 ----------------------------------------------------------------------CTTC 1142
||||
Sbjct 1975 ACTCGAGCCACAGTTCAACCTTTGGACCTGGGGTTTACCATCACTCCAAAATCCATGACAGAGGTTGAACCTTC 2048
Query 1143 TACAGCCCTGAGGACTACAGATCCTCCTCCAGAACACCCTGAGGTGACACTTCCACCTTCAGACAAGGGTCAGG 1216
|||||||||||.||||||||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||
Sbjct 2049 TACAGCCCTGATGACTACAGCTCCTCCTCCAGGACACCCTGAGGTGACACTTCCACCTTCAGACAAGGGTCAGG 2122
Query 1217 CTCAGCATTCACACCTGACTGAAGCCACAGTTCAACCTCTGGACCTGGAGCTTAGCATAACTACAGAGCCTACT 1290
||||||||||||||||||||.|||||||.|||||||||||||||||||||||||.||||||||||.|.||||||
Sbjct 2123 CTCAGCATTCACACCTGACTCAAGCCACCGTTCAACCTCTGGACCTGGAGCTTACCATAACTACAAAACCTACT 2196
Query 1291 ACAGAGGTTAAACCGTCTCCAACCACGGAGGAAACCTCAGCTCAGCCTCCAGACCCGGGGCTTGCCATAACTCC 1364
||||||||||||||.|||||||||||||||||.||||||.|||||||||||||||.|||.||||||||.|.|||
Sbjct 2197 ACAGAGGTTAAACCATCTCCAACCACGGAGGAGACCTCAACTCAGCCTCCAGACCTGGGACTTGCCATCATTCC 2270
Query 1365 AGAACCCACTACAGAGATTGGACATTCCACAGCCCTGGAGAAGACTAGAGCTCCTCATCCAGACCAGGTTCAGA 1438
|||||||||||||||||.|.|||||||.|||||||||||||||||||.||||||||.||||||||.||||||||
Sbjct 2271 AGAACCCACTACAGAGACTAGACATTCTACAGCCCTGGAGAAGACTACAGCTCCTCGTCCAGACCGGGTTCAGA 2344
Query 1439 CTCTGCATCGAAGCCTGACTGAAGTCACAGGTCCACCTACAAAGTTAGAATCTTCGCAGGATTCATTGGTGCAG 1512
||||||||||||||||||||||||||||||||||||||||..|..|||||.||.|.|||||||||.||||||||
Sbjct 2345 CTCTGCATCGAAGCCTGACTGAAGTCACAGGTCCACCTACTGAACTAGAACCTGCTCAGGATTCACTGGTGCAG 2418
Query 1513 TCTGA------------------------AACTGCACCAGAGGAACAGAAGGCCTCCACAAGCACCAACATATG 1562
||||| ||||||||||||||||||.||||||||||||||||||||||||||
Sbjct 2419 TCTGAAAGTTACACCCAAAATAAGGCTTTAACTGCACCAGAGGAACACAAGGCCTCCACAAGCACCAACATATG 2492
Query 1563 TGAGCTCTGCACCTGCGGAGATGAGACTCTGTCATGTGTTGGTCTCAGCCCAAAGCAGAGGCTCCGCCAAGTGC 1636
|||||||||.||||||||||||||||...||||||||.|||.|||||.||||.|||||||||||||||||||||
Sbjct 2493 TGAGCTCTGTACCTGCGGAGATGAGATGTTGTCATGTATTGATCTCAACCCAGAGCAGAGGCTCCGCCAAGTGC 2566
Query 1637 CTGTGCCAGAGCCCGACACCTACAATGGCATCTTCACCACCTTAAATTTCCAAGGAAACTATATTTCATACCTT 1710
||||||||||||||.|||||.|||||||||.||||||||.|||||||||||||||||||||||||||.|||.||
Sbjct 2567 CTGTGCCAGAGCCCAACACCCACAATGGCACCTTCACCATCTTAAATTTCCAAGGAAACTATATTTCTTACATT 2640
Query 1711 GATGGAAATGTATGGAAAGCATACAGTTGGACCGAGAAACTAATTCTCAGTGAAAATTATTTGACTGAATTACC 1784
||||||||||||||||||||||||||||||||||||||||||||||||||.||||||.|.|||||||||||||.
Sbjct 2641 GATGGAAATGTATGGAAAGCATACAGTTGGACCGAGAAACTAATTCTCAGAGAAAATAACTTGACTGAATTACA 2714
Query 1785 TAAGGATTCATTTGAAGGCCTGCTATACCTCCAGTATTTA-ATTCTCAATCGCAATCCTCTGACTACTGTCGAA 1857
.|||||||||||||||||||||||||.||||||||||||| |||
Sbjct 2715 CAAGGATTCATTTGAAGGCCTGCTATCCCTCCAGTATTTAGATT------------------------------ 2758
Query 1858 GATCCATATCTCTTTGAACTGCCGGCATTAAAATA---TCT------AGACATGGGAACAACACACATCACACT 1922
||| ||.|||.||||||| ||| |||||| |||.|
Sbjct 2759 ------TAT------------CCTGCAATAAAATACAGTCTATTGAAAGACAT----------------ACATT 2798
Query 1923 TACAACACTTAAGAACATTCTCACGATGACTGTTGAACTGGAAAAACTGATCTTACCTAGCCATATGGCCTGCT 1996
| |||| |||.|..|.|.|||||.|..|.|| |||||| |.|
Sbjct 2799 T-----------GAAC-----CACTACCATTTTTGAAGTTTATAA----ATCTTA----------------GTT 2836
Query 1997 GCCTCTGCCAATTTAAAAATAGCATTGAGGCTGTCTGCAAGACAG---TCAAGCTGCATTGCAACACTGCATGT 2067
| ||||.|| ||| |||| ||| ||.|||.||||.|.||.|.
Sbjct 2837 G-------CAATGTA--------ATT---------------ACAGAACTCA----GCTTTGGAACATTTCAGGC 2876
Query 2068 CTGACTAACAGCATACA-TTGTCCTGAAGAAGCATCTGTAGGGAATCCAGAAGGAGCGTTCATGAAGATGTTAC 2140
|||.| ||.|.||.|| ||.| |.||.|| ||||
Sbjct 2877 CTGGC--ACGGAATGCAGTTTT-----------------------TACATAA-----GTTC------------- 2907
Query 2141 AAGCCCGGAAGCAGCACATGAGCACTCAGCTGACTATTGAGTCGGAGGCGCCCTCAGACAGCAGTGGCATCAAC 2214
Sbjct 2908 -------------------------------------------------------------------------- 2907
Query 2215 TTGTCAGGCTTTGGGGGTGATCAGCTTGAAATTCAGCTAACCGAGCAGCTACGGTCCCTCATCCCCAACGAGGA 2288
Sbjct 2908 -------------------------------------------------------------------------- 2907
Query 2289 TGTGAGAAAGTTCATGTCTCATGTTATCCGGACCTTGAAAATGGAATGTTCAGAAACACATGTGCAAGGGAGCT 2362
Sbjct 2908 -------------------------------------------------------------------------- 2907
Query 2363 GTGCCAAGCTCATGTTGCGAACAGGCCTCCTGATGAAGCTTCTCAGCGAGCAGCAGGAAGCAAAGGCATTGAAT 2436
Sbjct 2908 -------------------------------------------------------------------------- 2907
Query 2437 GTAGAATGGGATACGGACCAACAAAAAACAAATTATATTAATGAGAACATGGAACAGAATGAACAGAAAGAGCA 2510
Sbjct 2908 -------------------------------------------------------------------------- 2907
Query 2511 GAAGTCAAGTGAGCTCATGAAAGAAGTTCCAGGAGATGACTATAAGAACAAACTCATCTTCGCAATATCTGTGA 2584
Sbjct 2908 -------------------------------------------------------------------------- 2907
Query 2585 CTGTAATACTAATAATTTTGATTATAATTTTTTGTCTTATAGAGGTGAATTCACATAAAAGGGCATCAGAAAAA 2658
Sbjct 2908 -------------------------------------------------------------------------- 2907
Query 2659 TACAAAGACAACCCATCAATATCAGGAGCC 2688
Sbjct 2908 ------------------------------ 2907
