Nucleotide Global Alignment
Description
- Query:
- TRCN0000466717
- Subject:
- NM_001286788.1
- Aligned Length:
- 4470
- Identities:
- 2688
- Gaps:
- 1506
Alignment
Query 1 ATGTCCAAAGTGATCCAGAAGAAGAACCACTGGACTAGCAGGGTTCACGAATGCACCGTGAAGCGGGGACCCCA 74
Sbjct 1 -------------------------------------------------------------------------- 0
Query 75 GGGCGAGCTGGGGGTGACGGTGCTGGGAGGCGCGGAGCACGGGGAGTTTCCGTACGTCGGAGCGGTGGCGGCGG 148
Sbjct 1 -------------------------------------------------------------------------- 0
Query 149 TCGAGGCAGCGGGGCTTCCCGGCGGCGGCGAGGGCCCGAGGCTGGGCGAAGGGGAGCTGCTTCTGGAGGTGCAG 222
Sbjct 1 -------------------------------------------------------------------------- 0
Query 223 GGGGTCCGGGTGTCCGGCTTGCCCCGCTATGACGTGCTGGGGGTCATCGACAGCTGCAAGGAGGCCGTCACCTT 296
Sbjct 1 -------------------------------------------------------------------------- 0
Query 297 CAAGGCCGTCAGACAAGGAGGAAGGCTGAACAAGGACCTGCGACATTTTCTCAATCAGCGATTCCAGAAGGGGT 370
Sbjct 1 -------------------------------------------------------------------------- 0
Query 371 CTCCTGATCATGAGCTCCAGCAGACCATAAGGGATAACCTTTACCGCCATGCTGTGCCTTGCACAACCCGATCT 444
Sbjct 1 -------------------------------------------------------------------------- 0
Query 445 CCCAGAGAAGGAGAAGTGCCTGGCGTGGACTATAACTTTCTGACTGTGAAGGAGTTCTTGGACCTCGAGCAGAG 518
Sbjct 1 -------------------------------------------------------------------------- 0
Query 519 TGGGACTCTTCTGGAAGTCGGCACCTATGAAGGAAACTATTATGGGACACCCAAGCCTCCTAGCCAGCCAGTCA 592
Sbjct 1 -------------------------------------------------------------------------- 0
Query 593 GTGGGAAAGTGATCACGACGGATGCCTTGCACAGCCTTCAGTCTGGCTCTAAGCAGTCGACCCCGAAGCGAACC 666
Sbjct 1 -------------------------------------------------------------------------- 0
Query 667 AAGTCCTACATGATATGCAAAATGCTGGCATAGTCCACGCGGAGAATGAGGAGGAGGATGACGTTCCTGAAATG 740
||||||||||||||||||||||||.|||||||||||||||||||.||.||.|||||||||
Sbjct 1 --------------ATGCAAAATGCTGGCATAGTCCACCCGGAGAATGAGGAGGAGGAGGATGTCCCTGAAATG 60
Query 741 AACAGCAGCTTTACAGCCGATTCTGGTGAACAAGAGGAGCACACTCTCCAAGAAACAGCATTACCACCTGTGAA 814
|||||.||||||||||||||.|||||.||.||.||.||||||||||||||||||.||.|..|.||.||||||||
Sbjct 61 AACAGTAGCTTTACAGCCGACTCTGGAGACCAGGACGAGCACACTCTCCAAGAAGCAACGCTCCCGCCTGTGAA 134
Query 815 TAGTAGCATCATCGCTGCTCCCATCACGGACCCTTCTCAGAAGTTCCCTCAATACCTACCTCTTTCTGCAGAGG 888
||||||||||.||||||||||||||||||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct 135 TAGTAGCATCCTCGCTGCTCCCATCACGGACCCTTCTCAGAAGTTCCCTCAGTACCTACCTCTTTCTGCAGAGG 208
Query 889 ATAATTTAGGTCCTCTACCTGAAAACTGGGAGATGGCCTATACTGAAAATGGAGAAGTCTATTTTATAGACCAT 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||.
Sbjct 209 ATAATTTAGGTCCTCTACCTGAAAACTGGGAGATGGCCTATACTGAAAATGGAGAAGTCTATTTCATAGACCAC 282
Query 963 AACACGAAAACAACATCTTGGTTAGACCCTCGGTGCCTAAACAAGCAGCAGAAGCCACTGGAAGAGTGTGAAGA 1036
|||||||||||||||||.||||||||||||||||||||.|||||.|||||||||||.||||||||.||||||||
Sbjct 283 AACACGAAAACAACATCATGGTTAGACCCTCGGTGCCTGAACAAACAGCAGAAGCCTCTGGAAGAATGTGAAGA 356
Query 1037 TGATGAAGGGGTACACACCGAGGAGCTGGACAGTGAACTAGAACTGCCTGCTGGTTGGGAAAAGATTGAAGACC 1110
||||||||||||||||||||||||||||||||||||||||||..||||||||||.|||||||||||||||||||
Sbjct 357 TGATGAAGGGGTACACACCGAGGAGCTGGACAGTGAACTAGAGTTGCCTGCTGGCTGGGAAAAGATTGAAGACC 430
Query 1111 CTGTCTATGGTATCTACTATGTAGACCACATCAACAGGAAGACACAATATGAGAACCCGGTTCTAGAAGCCAAA 1184
|||||||.|||.|||||||||||||||||||||||||||||||.||||||||.|||||.||.||||||||||||
Sbjct 431 CTGTCTACGGTGTCTACTATGTAGACCACATCAACAGGAAGACGCAATATGAAAACCCAGTCCTAGAAGCCAAA 504
Query 1185 CGGAAGAAGCAGCTTGAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCA 1258
||||||||.||||||| ||||||||||||||||||||||||..||||..|.|||||
Sbjct 505 CGGAAGAAACAGCTTG------------------AACAGCAGCAGCAACAGCAGCAGCCTCAGCCACCGCAGC- 559
Query 1259 GCAGACAGAAGAATGGACAGAAGATCACTCAGCCCTTGTGCCTCCTGTTATTCCAAACCACCCTCCAAGCAATC 1332
|||||||.||||||||.|||||..||.|..||||||||||||||..|||...|||.||.||.|||||||
Sbjct 560 -----CAGAAGAGTGGACAGAGGATCATGCATCTGTTGTGCCTCCTGTTGCTCCTTCCCATCCCCCGAGCAATC 628
Query 1333 CAGAGCCAGCCAGAGAAGTTCCACTTCAGGGCAAACCCTTTTTTACACGAAACCCTTCTGAGTTGAAAGGCAAG 1406
|.|||||||||||.|||..||||||||||||||||||.|||||||||.|||||||.||||||.|||||||||||
Sbjct 629 CGGAGCCAGCCAGGGAAACTCCACTTCAGGGCAAACCTTTTTTTACAAGAAACCCCTCTGAGCTGAAAGGCAAG 702
Query 1407 TTCATTCACACAAAGCTGCGGAAAAGCAGTCGTGGCTTTGGCTTCACGGTGGTTGGAGGGGATGAACCTGATGA 1480
|||||||||||.|||||.|||||||||||.||.||||||||||||||||||||||||||.||.||.||||||||
Sbjct 703 TTCATTCACACGAAGCTACGGAAAAGCAGCCGAGGCTTTGGCTTCACGGTGGTTGGAGGAGACGAGCCTGATGA 776
Query 1481 GTTTCTCCAGATCAAGAGCTTGGTCCTAGATGGTCCTGCTGCATTGGATGGCAAGATGGAAACAGGGGATGTGA 1554
|||.||.||||||||||||.|.|||||.|||||||||||.|||.||||||||||||||||.|||||||||||.|
Sbjct 777 GTTCCTGCAGATCAAGAGCCTCGTCCTCGATGGTCCTGCCGCACTGGATGGCAAGATGGAGACAGGGGATGTAA 850
Query 1555 TTGTAAGTGTGAATGACACCTGTGTTTTGGGACACACACATGCTCAAGTTGTGAAGATCTTCCAGTCCATCCCC 1628
||||.||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||.|||
Sbjct 851 TTGTGAGTGTGAATGACACCTGTGTTTTGGGACACACACATGCTCAAGTTGTGAAAATCTTCCAGTCCATTCCC 924
Query 1629 ATTGGTGCCAGCGTGGACCTTGAACTCTGCCGAGGTTATCCATTGCCTTTTGATCCAGATGACCCCAATACAAG 1702
|||||||||||.||||||||||||||||||.||||||||||||||||||||||.||.||||||||.||||||||
Sbjct 925 ATTGGTGCCAGTGTGGACCTTGAACTCTGCAGAGGTTATCCATTGCCTTTTGACCCGGATGACCCTAATACAAG 998
Query 1703 TTTAGTGACCTCGGTAGCCATTTTGGATAAAGAACCAATTATTGTGAATGGGCAAGAGACCTATGATTCACCAG 1776
|||||||||||||||.|||||||||||.|||||||||||||||||.|||||.|||||||||||.||||||||||
Sbjct 999 TTTAGTGACCTCGGTGGCCATTTTGGACAAAGAACCAATTATTGTAAATGGACAAGAGACCTACGATTCACCAG 1072
Query 1777 CTAGCCACAGTAGTAAAACAGGCAAAGTCAATGGCATGAAGGATGCCAGGCCAAGCAGCCCAGCGGACGTGGCT 1850
|.||||||||||||||||||||||||||||...||||||||||||||||||||||||||||.||.||.||||||
Sbjct 1073 CGAGCCACAGTAGTAAAACAGGCAAAGTCAGCAGCATGAAGGATGCCAGGCCAAGCAGCCCTGCTGATGTGGCT 1146
Query 1851 TCAAATAGTTCTCATGGTTATCCTAATGACACTGTTTCTTTGGCTTCCTCCATAGCCACTCAGCCAGAACTCAT 1924
||.||.||.||||||||||||||.||.|||||.||.||.||||||||||||||||||||.||||||||.||.||
Sbjct 1147 TCCAACAGCTCTCATGGTTATCCCAACGACACAGTCTCCTTGGCTTCCTCCATAGCCACCCAGCCAGAGCTAAT 1220
Query 1925 AACTGTTCATATTGTCAAAGGGCCAATGGGCTTTGGTTTTACTATCGCAGACAGTCCTGGTGGGGGTGGCCAAA 1998
|||||||||.||.|||||||||||||||||.|||||.|||||.||||||||||||||.||||||||||||||||
Sbjct 1221 AACTGTTCACATAGTCAAAGGGCCAATGGGATTTGGCTTTACGATCGCAGACAGTCCCGGTGGGGGTGGCCAAA 1294
Query 1999 GAGTGAAACAGATTGTTGACAGCCCAAGGTGCCGAGGCCTGAAAGAAGGGGATCTCATAGTGGAAGTTAATAAG 2072
||||||||||||||||||||||.|||.|.|||.|||||||.||||||||||||||.||.|||||.||.||||||
Sbjct 1295 GAGTGAAACAGATTGTTGACAGTCCACGCTGCAGAGGCCTCAAAGAAGGGGATCTTATCGTGGAGGTGAATAAG 1368
Query 2073 AAGAACGTGCAGGCCCTAACTCACAACCAAGTGGTGGATATGCTGGTTGAGTGTCCTAAGGGAAGTGAGGTCAC 2146
|||||||||||||||||.||.|||||.|||||.||||||||||||.||||.|||||.|||||||||||||||||
Sbjct 1369 AAGAACGTGCAGGCCCTGACGCACAATCAAGTCGTGGATATGCTGATTGAATGTCCCAAGGGAAGTGAGGTCAC 1442
Query 2147 ATTGTTGGTGCAACGAGGAGGGCTGCCAGTTCCCAAGAAGAGCCCAAAGTCGCAACCACTGGAAAGGAAAGACA 2220
|.||||||||||.|||||||||||.|||||||||||||||||||||||||||||.||||||||.||||||||||
Sbjct 1443 ACTGTTGGTGCAGCGAGGAGGGCTACCAGTTCCCAAGAAGAGCCCAAAGTCGCAGCCACTGGAGAGGAAAGACA 1516
Query 2221 GCCAGAATAGTTCTCAGCACAGTGTTTCCAGCCACCGAAGCCTGCACACAGCATCCCCAAGCCACAGCACACAG 2294
||||||||||.||.||||||||.||.|||||||||||.|||||||||||.||.|||||.||||||.|||.||||
Sbjct 1517 GCCAGAATAGCTCCCAGCACAGCGTCTCCAGCCACCGGAGCCTGCACACTGCGTCCCCGAGCCACGGCATACAG 1590
Query 2295 GTGCTCCCCGAGTTCCCACCTGCAGAGGCCCAAGCTCCAGATCAAACTGACAGCTCTGGCCAGAAAAAACCAGA 2368
||||||||.||||.||.|||||||||.||||..|||||||||||.||.|||||||||||.||||||||.|||||
Sbjct 1591 GTGCTCCCTGAGTACCTACCTGCAGACGCCCCTGCTCCAGATCAGACCGACAGCTCTGGGCAGAAAAAGCCAGA 1664
Query 2369 TCCTTTTAAAATCTGGGCCCAGTCCAGGAGCATGTATGAAAACCGAC--------------------------- 2415
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 TCCTTTTAAAATCTGGGCCCAGTCCAGGAGCATGTATGAAAACCGACCTATGTCACCTTCGCCTGCATCAGGAT 1738
Query 2416 -------------------------------TTCCA--------------------GATTACCAGGAACAGGAC 2438
||||| .|||||||||||||||||
Sbjct 1739 TGAGCAAGGGTGAAAGAGACAGAGAAATCAATTCCACGAATTTTGGAGAATGTCAGAATTACCAGGAACAGGAC 1812
Query 2439 ATCTTCCTCTGGAGAAAAGAGACTGGATTTGGATTTAGGATTCTGGGTGGAAATGAACCAGGGGAACCTATTTA 2512
||||||||||||||||||||.||.||||||||||||||||||||||||||||||||||||||||||||.|||||
Sbjct 1813 ATCTTCCTCTGGAGAAAAGAAACCGGATTTGGATTTAGGATTCTGGGTGGAAATGAACCAGGGGAACCCATTTA 1886
Query 2513 TATTGGTCACATCGTACCACTGGGTGCTGCTGATACTGACGGCCGCCTGAGGTCTGGAGATGAATTAATCTGTG 2586
|||.||||||||||||||.||||||||||||||.||.|||||||||||||||||||||||||||||||||||||
Sbjct 1887 TATCGGTCACATCGTACCGCTGGGTGCTGCTGACACAGACGGCCGCCTGAGGTCTGGAGATGAATTAATCTGTG 1960
Query 2587 TGGATGGGACGCCAGTAATTGGAAAATCACACCAGCTTGTGGTCCAGCTTATGCAACAAGCTGCCAAGCAAGGC 2660
||||||||||.|||||||||||.||||||||||||||.||||||||||||||||||||||||||||||||||||
Sbjct 1961 TGGATGGGACACCAGTAATTGGGAAATCACACCAGCTCGTGGTCCAGCTTATGCAACAAGCTGCCAAGCAAGGC 2034
Query 2661 CACGTCAATCTCACGGTGCGGCGTAAAGTGGTTTTTGCGGTGCCCAAAACCGAGAACGAGGTGCCCTCGCCAGC 2734
||.|||||||||||.|||.||||.||||||||.|||||.||.||||||.|.|||||.|||||||||||.|||||
Sbjct 2035 CATGTCAATCTCACAGTGAGGCGGAAAGTGGTCTTTGCCGTCCCCAAAGCAGAGAATGAGGTGCCCTCACCAGC 2108
Query 2735 CTCCTCTCATCACAGTAGCAACCAGCCGGCCTCGCTGACAGAAGAGAAGCGCACTCCGCAGGGCAGCCAGAACT 2808
|||.||.||.|||||||||||||||||.||.||.|||||.||.|||||.|||||.|||||.|||||||||||||
Sbjct 2109 CTCATCACACCACAGTAGCAACCAGCCCGCGTCCCTGACGGAGGAGAAACGCACACCGCAAGGCAGCCAGAACT 2182
Query 2809 CGCTGAACACGGTGAGCTCGGGCAGCGGCAGCACCAGCGGCATCGGCAGTGGCGGCGGCGGGGGCAGCGGCGTG 2882
|.||||||||.||||||||.|||||||||||||||||.|||||.||||||||.|||||||||||||||||.|||
Sbjct 2183 CTCTGAACACTGTGAGCTCTGGCAGCGGCAGCACCAGTGGCATTGGCAGTGGTGGCGGCGGGGGCAGCGGTGTG 2256
Query 2883 GTCAGCACCGTGGTGCAGCCCTACGACGTGGAGATCCGGCGCGGGGAGAACGAGGGCTTCGGCTTCGTCATCGT 2956
||.|||.|.|||.||||||||||.||.||||||||.|||||.|||||||||||||||||.||.||.||||||||
Sbjct 2257 GTGAGCGCTGTGCTGCAGCCCTATGATGTGGAGATTCGGCGTGGGGAGAACGAGGGCTTTGGGTTTGTCATCGT 2330
Query 2957 GTCCTCGGTGAGCAGGCCCGAAGCAGGCACGACCTTTGGCAATGCATGTGTGGCTATGCCTCACAAAATAGGTC 3030
||||||.||||||||.||||||||.|||||.|||||.|||||||||||||||||||||||||||||||||||||
Sbjct 2331 GTCCTCCGTGAGCAGACCCGAAGCGGGCACAACCTTCGGCAATGCATGTGTGGCTATGCCTCACAAAATAGGTC 2404
Query 3031 GGATTATTGAGGGGAGCCCTGCTGACCGCTGTGGCAAGCTGAAAGTAGGAGACCGGATCTTGGCAGTAAATGGA 3104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2405 GGATTATTGAGGGGAGCCCTGCTGACCGCTGTGGCAAGCTGAAAGTAGGAGACCGGATCTTGGCAGTAAATGGA 2478
Query 3105 TGTTCCATCACCAACAAATCCCATTCAGACATTGTGAACCTAATCAAGGAAGCGGGAAACACAGTTACCCTCCG 3178
||||||||||||||||||||||||||.||||||||.|||||||||||.||||||||.||||||||.||.|||||
Sbjct 2479 TGTTCCATCACCAACAAATCCCATTCTGACATTGTCAACCTAATCAAAGAAGCGGGCAACACAGTGACTCTCCG 2552
Query 3179 CATCATTCCTGGGGATGAGTCCTCGAATGCCACCTTGCTGACCAATGCAGAGAAGATTGCCACCATCACCACCA 3252
||||||.||.||||||||||||||.||||||||..|||||||.|||||.|||||||||||||||||||||||||
Sbjct 2553 CATCATCCCCGGGGATGAGTCCTCAAATGCCACGCTGCTGACTAATGCTGAGAAGATTGCCACCATCACCACCA 2626
Query 3253 CACACACCCCTTCTCAGCAAGGGACCCAGGAGACAAGGAATACCACCAAACCAAAGCAGGAATCTCAATTTGAG 3326
|.||..||||.||||||||.|||||||||||.|||||||..||||||||||||||||||||.|||||.||||||
Sbjct 2627 CTCATGCCCCCTCTCAGCAGGGGACCCAGGAAACAAGGACCACCACCAAACCAAAGCAGGATTCTCAGTTTGAG 2700
Query 3327 TTCAAAGCACCCCAAGCAACACAGGAGCAAGATTTTTACACTGTGGAACTGGAAAGAGGAGCCAAGGGATTTGG 3400
|||||||.|||.||.||..||||||||||||||||.||||||||||||.||||||||||.||||||||||||||
Sbjct 2701 TTCAAAGGACCGCAGGCTGCACAGGAGCAAGATTTCTACACTGTGGAATTGGAAAGAGGGGCCAAGGGATTTGG 2774
Query 3401 CTTTAGCCTTCGAGGAGGCCGAGAGTATAACATGGACCTCTATGTTCTGCGCTTAGCAGAGGACGGTCCTGCGG 3474
||||||.||||||||.||||||||.|||||||||||.||.||||||||||||||.||||||||.||||||||.|
Sbjct 2775 CTTTAGTCTTCGAGGGGGCCGAGAATATAACATGGATCTTTATGTTCTGCGCTTGGCAGAGGATGGTCCTGCAG 2848
Query 3475 AGAGGTGTGGAAAGATGAGGATTGGTGATGAAATTTTAGAGATCAATGGTGAGACCACCAAAAACATGAAGCAT 3548
|.||.|||||.||||||||||||||.|||||||||.||||||||||||||||||||||||||||||||||.||.
Sbjct 2849 AAAGATGTGGGAAGATGAGGATTGGCGATGAAATTCTAGAGATCAATGGTGAGACCACCAAAAACATGAAACAC 2922
Query 3549 TCTCGAGCTATAGAACTGATTAAGAATGGTGGCCGCAGAGTTCGTCTGTTTCTGAAGCGGGGAGACGGCTCAGT 3622
|||||.||.|||||||||||.||||||||.||||||||.||.||||||||||||..||||||||||||||||||
Sbjct 2923 TCTCGGGCCATAGAACTGATCAAGAATGGCGGCCGCAGGGTCCGTCTGTTTCTGCGGCGGGGAGACGGCTCAGT 2996
Query 3623 ACCAGATTATGACCCCAGCAGCGACCGCCACGGCCCCGCCACCGGTCCACAAGGTGTTCCGAAGTGAGGCCGGG 3696
.|||||.|||| |.| ||| |||..|.| |||
Sbjct 2997 CCCAGAATATG---------GTG--------------------GGT---CAAACTAT---GAA----------- 3024
Query 3697 CCGACCGCGGCAGCATC------------GTCATTGGAGTCCAGTTACCCACCCGATCTTCACAAATCATCACC 3758
|.|||| |.||| ||.||||
Sbjct 3025 -----------AACATCCCTTCCTTCCCTGGCAT--GACTCCA------------------------------- 3054
Query 3759 ACATGGGGAAAAGCGGGCACACGCAAGGGATCCGAAAGGCAGCAGAGAGTATAGCAGACAACCCAATGAACACC 3832
Sbjct 3055 -------------------------------------------------------------------------- 3054
Query 3833 ACACCTGGAATGGGACTTCGAGGAAACCCGACAGCGGGGCATGCCGACCCAAGGACCGGGCGCCGGAGGGACGG 3906
Sbjct 3055 -------------------------------------------------------------------------- 3054
Query 3907 AGGGACGCGCAGGCCGAGCGCGCGGCAGCCGCCAACGGCCCCAAGAGGCGGTCCCCAGAGAAGCGGAGGGAGGG 3980
Sbjct 3055 -------------------------------------------------------------------------- 3054
Query 3981 CACCCGCAGCGCCGACAACACTTTGGAGAGGAGGGAGAAGCACGAGAAGAGACGAGACGTCTCTCCGGAGCGGA 4054
Sbjct 3055 -------------------------------------------------------------------------- 3054
Query 4055 GGCGAGAGCGGTCACCCACCCGCAGGAGAGACGGCTCCCCCAGCCGGCGGAGACGGTCTCTGGAGAGACTCCTG 4128
Sbjct 3055 -------------------------------------------------------------------------- 3054
Query 4129 GAGCAGAGGAGGTCCCCCGAGCGCAGGAGAGGGGGCTCGCCCGAGCGCAGGGCCAAGTCCACCGACCGGAGGCG 4202
Sbjct 3055 -------------------------------------------------------------------------- 3054
Query 4203 CGCACGCTCCCCCGAGCGCAGGAGAGAGCGGTCCCTGGACAAAAGGAACAGAGAGGACAGAGCCAGCCACCGAG 4276
Sbjct 3055 -------------------------------------------------------------------------- 3054
Query 4277 AAAGGGAAGAGGCGAATCTGAAACAGGATGCCGGCAGAAGTTCCAGACATCCCCCGGAGCAGAGAAGGCGACCT 4350
Sbjct 3055 -------------------------------------------------------------------------- 3054
Query 4351 TACAAAGAATGTAGCACCGACCTCAGTATC 4380
Sbjct 3055 ------------------------------ 3054
