Nucleotide Global Alignment

Description

Query:
TRCN0000467195
Subject:
XM_006498553.2
Aligned Length:
3444
Identities:
1652
Gaps:
1590

Alignment

Query    1  ATGAGCGACATAGTGGAGAAGACGCTGACGGCGCTGCCGGGACTCTTTCTGCAGAACCAGCCCGGT-GGTGGGC  73
            |||||||||||.|||||||.|||||||||.||.||||||||.|||||.|||||||||||||    | ||.||.|
Sbjct    1  ATGAGCGACATGGTGGAGAGGACGCTGACCGCACTGCCGGGGCTCTTCCTGCAGAACCAGC----TGGGAGGAC  70

Query   74  CCGCGGCCGCCAAGGCGTCCTTCTCCTCGAGGCTGGGCAGCCTTGTCCGCGGCATCACAGCCCTCACCTCCAAG  147
            |.||||||.|||..||..||||||.|||.|||||||||.||||..||||.|||.||||.||.|||.|.||||||
Sbjct   71  CTGCGGCCTCCAGAGCACCCTTCTTCTCCAGGCTGGGCGGCCTCATCCGTGGCGTCACTGCACTCTCATCCAAG  144

Query  148  CACGAAGAAGAAAAATTAATCCAGCAGGAACTGAGTAGTCTGAAAGCGACTGTTTCTGCTCCTACTACAACACT  221
            |||||||||||.||||||||||||||||||||||||||||||||.||.||||||||||||||.||.||.|||||
Sbjct  145  CACGAAGAAGAGAAATTAATCCAGCAGGAACTGAGTAGTCTGAAGGCAACTGTTTCTGCTCCGACCACGACACT  218

Query  222  GAAAATGATGAAGGAATGTATGGTGAGACTTATATATTGTGAAATGCTTGGATATGATGCTTCCTTTGGCTATA  295
            |||||.||||||||||||||||||||||||||||||.|||||.|||||||||||.||||||||.|||||.||||
Sbjct  219  GAAAACGATGAAGGAATGTATGGTGAGACTTATATACTGTGAGATGCTTGGATACGATGCTTCTTTTGGTTATA  292

Query  296  TTCATGCAATCAAGTTAGCCCAACAAGGAAACCTCTTAGAAAAAAGAGTAGGTTATTTGGCTGTTTCCTTATTT  369
            |.||||||||||||||.||||||||||||||||||||||||||||||||.|||||||||||||||||.||||||
Sbjct  293  TACATGCAATCAAGTTGGCCCAACAAGGAAACCTCTTAGAAAAAAGAGTGGGTTATTTGGCTGTTTCTTTATTT  366

Query  370  CTACATGAAAGTCATGAATTATTGCTTCTCCTTGTGAATACAGTTGTAA-------------------------  418
            ||||||||||||||||||.|.|||||||||||||||||||||||.||||                         
Sbjct  367  CTACATGAAAGTCATGAACTTTTGCTTCTCCTTGTGAATACAGTGGTAAAGACTGTCTTCTTTGCTTGCTTATG  440

Query  419  --AGGATCTGCAGAGCACTAACCTAGTAGAAGTGTGTATGGCACTGACTGTTGTTAGCCAGATTTTCCCCTGCG  490
              ||||.||||||||||||||.||.||||||||.|||||||||||.||||||||.||||||||||||||..|.|
Sbjct  441  GCAGGACCTGCAGAGCACTAATCTGGTAGAAGTATGTATGGCACTTACTGTTGTCAGCCAGATTTTCCCTCGAG  514

Query  491  AAATGATTCCAGCTGTTCTTCCATTAATAGAAGATAAACTTCAACATTCTAAGGAGATTGTACGAAGAAAAGCT  564
            |||||||||||||.|||||||||.|||||||||||||||||||||||||||||||||||.|||||||||||||.
Sbjct  515  AAATGATTCCAGCCGTTCTTCCACTAATAGAAGATAAACTTCAACATTCTAAGGAGATTATACGAAGAAAAGCA  588

Query  565  GTTCTGGCATTATACAAATTCCATCTCATTGCTCCTAATCAAGTACAACATATTCATATTAAGTTTCGGAAAGC  638
            ||||||||||||||||||||..|.||||||||.||.|||||||||||.||.||.||.|.|||.|||||||||||
Sbjct  589  GTTCTGGCATTATACAAATTTTACCTCATTGCCCCCAATCAAGTACAGCACATCCACACTAAATTTCGGAAAGC  662

Query  639  ACTTTGTGACAGAGATGTTGGGGTCATGGCTGCCTCCTTGCATATATATCTTAGAATGATTAAGGAGAATTCAT  712
            .|||||||||||||||||||||||||||||||||||.|||||.|||||.|||||.|||||||||||.|||.|.|
Sbjct  663  GCTTTGTGACAGAGATGTTGGGGTCATGGCTGCCTCTTTGCACATATACCTTAGGATGATTAAGGAAAATGCTT  736

Query  713  CTGGATATAAAGACTTGACTGGGAGTTTTGTAACCATTTTGAAGCAAGTAGTTGGAGGAAAGCTCCCAGTAGAA  786
            ||||.||||||||||||||.|.||||||||||||.|||||.|||||.||.||.||.||.||||||||.|||||.
Sbjct  737  CTGGCTATAAAGACTTGACGGAGAGTTTTGTAACAATTTTAAAGCAGGTGGTGGGCGGGAAGCTCCCGGTAGAG  810

Query  787  TTCAATTACCACAGTGTGCCAGCACCATGGTTACAAATTCAGCTCTTGAGAATACTGGGACTTCTAGGAAAAGA  860
            ||||.|||||||||.||||||||||||||||||||.|||||||||.||||||||||||||||.||.||.|||||
Sbjct  811  TTCAGTTACCACAGCGTGCCAGCACCATGGTTACAGATTCAGCTCCTGAGAATACTGGGACTGCTGGGGAAAGA  884

Query  861  TGATCAAAGGACAAGTGAATTAATGTATGATGTTCTTGATGAATCCTTACGAAGAGCTGAGTTAAATCACAATG  934
            .|||.||||||||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct  885  CGATGAAAGGACAAGTGAATTAATGTATGATGTTCTTGATGAATCCTTACGAAGAGCCGAGTTAAATCACAATG  958

Query  935  TCACATATGCTATTTTGTTTGAATGTGTGCATACAGTCTATTCTATTTATCCTAAATCGGAATTACTTGAGAAG  1008
            ||||.||.||||||.|||||||||||||.||.|||.|||||||||||||||||||.||.|||||||||||||||
Sbjct  959  TCACTTACGCTATTCTGTTTGAATGTGTACACACAATCTATTCTATTTATCCTAAGTCAGAATTACTTGAGAAG  1032

Query 1009  GCTGCCAAGTGCATTGGAAAATTTGTTCTGTCACCTAAAATAAATCTAAAATATTTAGGACTGAAGGCTCTTAC  1082
            ||||||||||||||||||||||||||||||||||||||||||||.||.||||||||||||||||||||||||||
Sbjct 1033  GCTGCCAAGTGCATTGGAAAATTTGTTCTGTCACCTAAAATAAACCTCAAATATTTAGGACTGAAGGCTCTTAC  1106

Query 1083  CTATGTTATCCAACAGGATCCTACTCTGGCTCTTCAACACCAGATGACAATAATTGAATGTTTAGATCATCCTG  1156
            ||||||||||||.|||||||||.||||||||||||||||||||||.||.|||||||||||..||||.||.||||
Sbjct 1107  CTATGTTATCCAGCAGGATCCTTCTCTGGCTCTTCAACACCAGATAACCATAATTGAATGCCTAGACCACCCTG  1180

Query 1157  ATCCCATTATTAAAAGAGAGACTCTGGAACTTCTTTACAGAATTACTAATGCACAGAATATAACAGTTATTGTC  1230
            ||||||||||||||||||||||||||||||||||||||||||||||.||||||||||||.||...||||||||.
Sbjct 1181  ATCCCATTATTAAAAGAGAGACTCTGGAACTTCTTTACAGAATTACAAATGCACAGAATGTAGTGGTTATTGTA  1254

Query 1231  CAGAAAATGCTTGAATATTTACATCAGAGCAAAGAAGAGTATGTCATCGTCAATTTGGTCGGCAAAATAGCAGA  1304
            |||||||||||||||||.|||||||||||||||||||||.||.|||||.|||.|||.||.||||.|||.||.||
Sbjct 1255  CAGAAAATGCTTGAATACTTACATCAGAGCAAAGAAGAGCATATCATCATCAGTTTAGTTGGCAGAATTGCTGA  1328

Query 1305  GCTGGCTGAGAAATATGCTCCTGATAATGCATGGTTTATTCAGACAATGAATGCTGTGTTTTCAGTAGGAGGAG  1378
            ||||||||||||||||||||||||.||.|..|||||||||||||||||||||||||||||||||||.|||||||
Sbjct 1329  GCTGGCTGAGAAATATGCTCCTGACAACGTGTGGTTTATTCAGACAATGAATGCTGTGTTTTCAGTGGGAGGAG  1402

Query 1379  ATGTAATGCATCCTGATATTCCCAATAACTTTCTGAGACTACTAGCGGAAGGTTTTGATGATGAAACAGAAGAT  1452
            |||||||||||||.|||||||.||..|||||.||||||||.|||||.|||||||||||||||||||||||||||
Sbjct 1403  ATGTAATGCATCCAGATATTCTCAGCAACTTCCTGAGACTGCTAGCAGAAGGTTTTGATGATGAAACAGAAGAT  1476

Query 1453  CAGCAATTAAGACTCTATGCAGTTCAGTCTTATCTCACTTTACTGGATATGGAAAATGTGTTCTATCCACAGAG  1526
            ||.||||||||||||||.|||||||||||||||||.||||||||.||||||||||||...||||||||||||||
Sbjct 1477  CAACAATTAAGACTCTACGCAGTTCAGTCTTATCTTACTTTACTAGATATGGAAAATACTTTCTATCCACAGAG  1550

Query 1527  ATTTCTTCAAGTTATGAGTTGGGTATTAGGGGAATATTCCTACCTCTTAGATAAGGAAACGCCAGAGGAAGTTA  1600
            ||||||||||||||||||||||||.|||||.||.||.|||||||||||||||||.||||..||||||||.||||
Sbjct 1551  ATTTCTTCAAGTTATGAGTTGGGTGTTAGGAGAGTACTCCTACCTCTTAGATAAAGAAAGTCCAGAGGAGGTTA  1624

Query 1601  TAGCTAAGCTCTACAAGTTACTTATGAATGACTCTGTGTCTTCAGAAACAAAAGCCTGGTTAATTGCTGCTGTG  1674
            ||.|.|.||||||||||||||||||||.||||||..|.|||||||||||.|||||.|||||..|||||||.||.
Sbjct 1625  TAACCAGGCTCTACAAGTTACTTATGAGTGACTCCATTTCTTCAGAAACGAAAGCATGGTTGTTTGCTGCGGTA  1698

Query 1675  ACCAAATTGACATCTCAGGCGCACTCTTCTAATAC----AGTTGAGAGATTAATCCATGAATTTACCATATCTT  1744
            |||||.||||||.||||.||.||.||||||    |    ||||||||.|||||||||.|||||.||..||||.|
Sbjct 1699  ACCAAGTTGACACCTCAAGCTCATTCTTCT----CCCTTAGTTGAGAAATTAATCCAAGAATTCACTGTATCCT  1768

Query 1745  TGGATACTTGTATGAGACAACATGCATTTGAATTAAAACATTTGCATGAGAATGTGGAACTTATGAAGAGCTTG  1818
            ||.||||||||.|||||||.||||||||||||||.||||||.|||||||.|||...||.||||||||||||.||
Sbjct 1769  TGAATACTTGTCTGAGACAGCATGCATTTGAATTGAAACATCTGCATGAAAATACAGAGCTTATGAAGAGCCTG  1842

Query 1819  CTTCCAGTTG-ACAGGAGTTGTGAAGACTTGGTGGTAGATGCTTCTTTATCTTTTCTGGATGGTTTTGTGGCTG  1891
            ||||..|.|| .|| ||.||||||||||.|.||||     |.|||         ||||  ||            
Sbjct 1843  CTTCAGGGTGCTCA-GAATTGTGAAGACATAGTGG-----GTTTC---------TCTG--TG------------  1887

Query 1892  AAGGACTCAGTCAGGGTGCAGCGCCTTACAAACCTCCCCATCAACGCCAGGAGGAAAAGCTTTCTCAGGAAAAA  1965
                                                                                      
Sbjct 1888  --------------------------------------------------------------------------  1887

Query 1966  GTTCTCAATTTTGAACCATATGGACTCTCCTTTTCTTCATCTGGCTTCACTGGACGACAGTCTCCTGCTGGCAT  2039
                                                                                      
Sbjct 1888  --------------------------------------------------------------------------  1887

Query 2040  TTCTCTTGGTTCAGATGTATCTGGGAATAGTGCTGAGACAGGACTGAAAGAGACAAATAGCTTGAAGCTGGAAG  2113
                                                                                      
Sbjct 1888  --------------------------------------------------------------------------  1887

Query 2114  GTATAAAGAAATTGTGGGGGAAAGAAGGCTATCTTCCCAAGAAGGAAAGCAAAACTGGTGATGAAAGTGGAGCT  2187
                                                                                      
Sbjct 1888  --------------------------------------------------------------------------  1887

Query 2188  CTGCCTGTTCCTCAAGAGAGTATAATGGAGAATGTAGATCAAGCTATAACTAAAAAGGATCAATCTCAAGTTCT  2261
                                                                                      
Sbjct 1888  --------------------------------------------------------------------------  1887

Query 2262  TACCCAATCTAAAGAGGAGAAAGAAAAGCAGCTGCTGGCATCATCATTATTTGTTGGTCTAGGATCAGAAAGTA  2335
                                                                                      
Sbjct 1888  --------------------------------------------------------------------------  1887

Query 2336  CAATCAACCTGCTGGGAAAAGCAGATACTGTCTCTCACAAGTTCAGAAGGAAATCAAAAGTCAAAGAAGCTAAA  2409
                                                                                      
Sbjct 1888  --------------------------------------------------------------------------  1887

Query 2410  AGTGGCGAAACAACCAGTACTCATAATATGACCTGTTCTTCCTTTAGTTCTTTGTCAAATGTGGCATATGAAGA  2483
                                                                                      
Sbjct 1888  --------------------------------------------------------------------------  1887

Query 2484  TGATTATTATTCGAATACTTTGCACGATACAGGAGACAAGGAATTAAAGAAATTTTCTCTCACTTCAGAACTTT  2557
                                                                                      
Sbjct 1888  --------------------------------------------------------------------------  1887

Query 2558  TGGATTCTGAGTCACTCACAGAACTGCCCTTGGTTGAGAAATTCTCATATTGTAGTCTGTCTACACCTTCATTG  2631
                                                                                      
Sbjct 1888  --------------------------------------------------------------------------  1887

Query 2632  TTTGCTAATAACAACATGGAAATTTTTCACCCTCCTCAATCTACTGCAGCCTCAGTTGCCAAGGAAAGCTCTTT  2705
                                                                                      
Sbjct 1888  --------------------------------------------------------------------------  1887

Query 2706  AGCTTCATCTTTTTTGGAAGAAACTACTGAATACATACACTCAAATGCTATGGAAGTCTGTAATAATGAAACTA  2779
                                                                                      
Sbjct 1888  --------------------------------------------------------------------------  1887

Query 2780  TATCAGTGTCTTCTTATAAAATTTGGAAAGATGATTGTTTATTGATGGTCTGGTCAGTCACTAATAAGAGTGGT  2853
                                                                                      
Sbjct 1888  --------------------------------------------------------------------------  1887

Query 2854  TTGGAATTGAAAAGTGCTGACTTAGAAATTTTTCCTGCAGAAAATTTCAAGGTGACTGAGCAACCTGGATGCTG  2927
                                                                                      
Sbjct 1888  --------------------------------------------------------------------------  1887

Query 2928  TTTGCCTGTAATGGAAGCAGAAAGCACCAAAAGCTTTCAATATAGTGTGCAGATAGAAAAACCTTTTACAGAAG  3001
                                                                                      
Sbjct 1888  --------------------------------------------------------------------------  1887

Query 3002  GAAATCTTACTGGTTTTATTAGTTATCATATGATGGATACTCATTCTGCTCAGCTGGAATTTTCTGTAAACTTA  3075
                                                                                      
Sbjct 1888  --------------------------------------------------------------------------  1887

Query 3076  TCACTATTAGATTTCATTAGACCATTAAAAATCTCAAGTGACGACTTTGGGAAACTCTGGTTATCCTTCGCAAA  3149
                                                                                      
Sbjct 1888  --------------------------------------------------------------------------  1887

Query 3150  TGATGTGAAACAAAATGTAAAAATGTCAGAATCTCAAGCTGCACTTCCTTCTGCACTAAAGACTCTGCAACAGA  3223
                                                                                      
Sbjct 1888  --------------------------------------------------------------------------  1887

Query 3224  AACTAAGACTCCATATTATTGAGATTATAGGCAATGAAGGGCTATTGGCCTGTCAGCTGCTCCCATCCATCCCC  3297
                                                                                      
Sbjct 1888  --------------------------------------------------------------------------  1887

Query 3298  TGCTTACTGCATTGCCGAGTTCATGCAGATGTATTAGCCCTGTGGTTCAGATCCTCCTGTTCTACTCTTCCTGA  3371
                                                                                      
Sbjct 1888  --------------------------------------------------------------------------  1887

Query 3372  CTATTTACTGTATCAGTGTCAAAAGGTGATGGAGGGATCC  3411
                                                    
Sbjct 1888  ----------------------------------------  1887

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