Nucleotide Global Alignment

Description

Query:
TRCN0000467243
Subject:
XR_001748939.1
Aligned Length:
3917
Identities:
2331
Gaps:
1585

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  GATGCTGTTTGGCGACTCGTCGCCATTCCCGGAGCAGGTCGGCCTCGGCCCAGGGGCGAGTATCCGTTGCTGTG  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  TCGGAGACACTAGTCCCCGACACCGAGACAGCCAGCCCTCTCCCCTGCCTCGCGGCGGGAGAGCGTGTCCGGCC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  GGCCGGCCGGCGGGGCTCGCGCAACCTCCCTCGCCTCCCCTTCCCCCGCAGCCTCCGCCCCGCCAGGCCCGGCC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CGGACTCCCGAGCCCCGGCCTCCTCGTCCTCGGTCGCCGCTGCCGCCGGGCTTAACAGCCCCGTCCGCCGCTTC  296

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  297  TCTTCCTAGTTTGAGAAGCCAAGGAAGGAAACAGGGAAAAATGTCGCCATGAAGGCCGAGAACCGCTGCCGCCG  370

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  371  CCGACCCCCGCCGGCCCTGAACGCCATGAGCCTGGGTCCCCGCCGCGCCCGCTCCGCTCCGACTGCCGTCGCCG  444

Query    1  ---------------ATGCCGCTGAGCTCCCCCAACGCCGCCGCCACCGCCTCCGACATGGACAAGAACAGCGG  59
                           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  CCGAGGCCCCCGTTGATGCCGCTGAGCTCCCCCAACGCCGCCGCCACCGCCTCCGACATGGACAAGAACAGCGG  518

Query   60  CTCCAACAGCTCCTCCGCCTCTTCGGGCAGCAGCAAAGGGCAACAGCCGCCCCGCTCCGCCTCGGCGGGGCCAG  133
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CTCCAACAGCTCCTCCGCCTCTTCGGGCAGCAGCAAAGGGCAACAGCCGCCCCGCTCCGCCTCGGCGGGGCCAG  592

Query  134  CCGGCGAGTCTAAACCCAAGAGC---------------------------------------------------  156
            |||||||||||||||||||||||                                                   
Sbjct  593  CCGGCGAGTCTAAACCCAAGAGCGAATTACTAATTTCAGCTGGATTCAATTTGTTGTCAGTTGATTCTGTAGTA  666

Query  157  --------------------------------------------------GATGGAAAGAACTCCAGTGGATCC  180
                                                              ||||||||||||||||||||||||
Sbjct  667  AGGCCATATGTTGCCCCTCTGGAGGTGCTTGTCAACTACTCTGGATGATGGATGGAAAGAACTCCAGTGGATCC  740

Query  181  AAGCGTTATAATCGCAAACGTGAACTTTCCTACCCCAAAAATGAAAGTTTTAACAACCAGTCCCGTCGCTCCAG  254
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AAGCGTTATAATCGCAAACGTGAACTTTCCTACCCCAAAAATGAAAGTTTTAACAACCAGTCCCGTCGCTCCAG  814

Query  255  TTCACAGAAAAGCAAGACTTTTAACAAGATGCCTCCTCAAAGGGGCGGCGGCAGCAGCAAACTCTTTAGCTCTT  328
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TTCACAGAAAAGCAAGACTTTTAACAAGATGCCTCCTCAAAGGGGCGGCGGCAGCAGCAAACTCTTTAGCTCTT  888

Query  329  CTTTTAATGGTGGAAGACGAGATGAGGTAGCAGAGGCTCAACGGGCAGAGTTTAGCCCTGCCCAGTTCTCTGGT  402
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CTTTTAATGGTGGAAGACGAGATGAGGTAGCAGAGGCTCAACGGGCAGAGTTTAGCCCTGCCCAGTTCTCTGGT  962

Query  403  CCTAAGAAGATCAACCTGAACCACTTGTTGAATTTCACTTTTGAACCCCGTGGCCAGACGGGTCACTTTGAAGG  476
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  CCTAAGAAGATCAACCTGAACCACTTGTTGAATTTCACTTTTGAACCCCGTGGCCAGACGGGTCACTTTGAAGG  1036

Query  477  CAGTGGACATGGTAGCTGGGGAAAGAGGAACAAGTGGGGACATAAGCCTTTTAACAAGGAACTCTTTTTACAGG  550
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CAGTGGACATGGTAGCTGGGGAAAGAGGAACAAGTGGGGACATAAGCCTTTTAACAAGGAACTCTTTTTACAGG  1110

Query  551  CCAACTGCCAATTTGTGGTGTCTGAAGACCAAGACTACACAGCTCATTTTGCTGATCCTGATACATTAGTTAAC  624
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  CCAACTGCCAATTTGTGGTGTCTGAAGACCAAGACTACACAGCTCATTTTGCTGATCCTGATACATTAGTTAAC  1184

Query  625  TGGGACTTTGTGGAACAAGTGCGCATTTGTAGCCATGAAGTGCCATCTTGCCCAATATGCCTCTATCCACCTAC  698
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TGGGACTTTGTGGAACAAGTGCGCATTTGTAGCCATGAAGTGCCATCTTGCCCAATATGCCTCTATCCACCTAC  1258

Query  699  TGCAGCCAAGATAACCCGTTGTGGACACATCTTCTGCTGGGCATGCATCCTGCACTATCTTTCACTGAGTGAGA  772
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  TGCAGCCAAGATAACCCGTTGTGGACACATCTTCTGCTGGGCATGCATCCTGCACTATCTTTCACTGAGTGAGA  1332

Query  773  AGACGTGGAGTAAATGTCCCATCTGTTACAGTTCTGTGCATAAGAAGGATCTCAAGAGTGTTGTTGCCACAGAG  846
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AGACGTGGAGTAAATGTCCCATCTGTTACAGTTCTGTGCATAAGAAGGATCTCAAGAGTGTTGTTGCCACAGAG  1406

Query  847  TCACATCAGTATGTTGTTGGTGATACCATTACGATGCAGCTGATGAAGAGGGAGAAAGGGGTGTTGGTGGCTTT  920
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  TCACATCAGTATGTTGTTGGTGATACCATTACGATGCAGCTGATGAAGAGGGAGAAAGGGGTGTTGGTGGCTTT  1480

Query  921  GCCCAAATCCAAATGGATGAATGTAGACCATCCCATTCATCTAGGAGATGAACAGCACAGCCAGTACTCCAAGT  994
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  GCCCAAATCCAAATGGATGAATGTAGACCATCCCATTCATCTAGGAGATGAACAGCACAGCCAGTACTCCAAGT  1554

Query  995  TTCTGCTGGCCTCTAAGGAGCAGGTGCTGCACCGGGTAGTTCTGGAGGAGAAAGTAGCACTAGAGCAGCAGCTG  1068
            |.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  TGCTGCTGGCCTCTAAGGAGCAGGTGCTGCACCGGGTAGTTCTGGAGGAGAAAGTAGCACTAGAGCAGCAGCTG  1628

Query 1069  GCAGAGGAGAAGCACACTCCCGAGTCCTGCTTTATTGAGGCAGCTATCCAGGAGCTCAAGACTCGGGAAGAGGC  1142
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  GCAGAGGAGAAGCACACTCCCGAGTCCTGCTTTATTGAGGCAGCTATCCAGGAGCTCAAGACTCGGGAAGAGGC  1702

Query 1143  TCTGTCGGGATTGGCCGGAAGCAGAAGGGAGGTCACTGGTGTTGTGGCTGCTCTGGAACAACTGGTGCTGATGG  1216
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  TCTGTCGGGATTGGCCGGAAGCAGAAGGGAGGTCACTGGTGTTGTGGCTGCTCTGGAACAACTGGTGCTGATGG  1776

Query 1217  CTCCCTTGGCGAAGGAGTCTGTTTTTCAACCCAGGAAGGGTGTGCTGGAGTATCTGTCTGCCTTCGATGAAGAA  1290
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  CTCCCTTGGCGAAGGAGTCTGTTTTTCAACCCAGGAAGGGTGTGCTGGAGTATCTGTCTGCCTTCGATGAAGAA  1850

Query 1291  ACCACGGAAGTTTGTTCTCTGGACACTCCTTCTAGACCTCTTGCTCTCCCTCTGGTAGAAGAGGAGGAAGCAGT  1364
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  ACCACGGAAGTTTGTTCTCTGGACACTCCTTCTAGACCTCTTGCTCTCCCTCTGGTAGAAGAGGAGGAAGCAGT  1924

Query 1365  GTCTGAACCAGAGCCTGAGGGGTTGCCAGAGGCCTGTGATGACTTGGAGTTAGCAGATGACAATCTTAAAGAGG  1438
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1925  GTCTGAACCAGAGCCTGAGGGGTTGCCAGAGGCCTGTGATGACTTGGAGTTAGCAGATGACAATCTTAAAGAGG  1998

Query 1439  GGACCATTTGCACTGAGTCCAGCCAGCAGGAACCCATCACCAAGTCAGGCTTCACACGCCTCAGCAGCTCTCCT  1512
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1999  GGACCATTTGCACTGAGTCCAGCCAGCAGGAACCCATCACCAAGTCAGGCTTCACACGCCTCAGCAGCTCTCCT  2072

Query 1513  TGTTACTACTTTTACCAAGCGGAAGATGGACAGCATATGTTCCTGCACCCTGTGAATGTGCGCTGCCTCGTGCG  1586
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2073  TGTTACTACTTTTACCAAGCGGAAGATGGACAGCATATGTTCCTGCACCCTGTGAATGTGCGCTGCCTCGTGCG  2146

Query 1587  GGAGTACGGCAGCCTGGAGAGGAGCCCCGAGAAGATCTCAGCAACTGTGGTGGAGATTGCTGGCTACTCCATGT  1660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2147  GGAGTACGGCAGCCTGGAGAGGAGCCCCGAGAAGATCTCAGCAACTGTGGTGGAGATTGCTGGCTACTCCATGT  2220

Query 1661  CTGAGGATGTTCGACAGCGTCACAGATATCTCTCTCACTTGCCACTCACCTGTGAGTTCAGCATCTGTGAACTG  1734
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2221  CTGAGGATGTTCGACAGCGTCACAGATATCTCTCTCACTTGCCACTCACCTGTGAGTTCAGCATCTGTGAACTG  2294

Query 1735  GCTTTGCAACCTCCTGTGGTCTCTAAGGAAACCCTAGAGATGTTCTCAGATGACATTGAGAAGAGGAAACGTCA  1808
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2295  GCTTTGCAACCTCCTGTGGTCTCTAAGGAAACCCTAGAGATGTTCTCAGATGACATTGAGAAGAGGAAACGTCA  2368

Query 1809  GCGCCAAAAGAAGGCTCGGGAGGAACGCCGCCGAGAGCGCAGGATTGAGATAGAGGAGAACAAGAAACAGGGCA  1882
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2369  GCGCCAAAAGAAGGCTCGGGAGGAACGCCGCCGAGAGCGCAGGATTGAGATAGAGGAGAACAAGAAACAGGGCA  2442

Query 1883  AGTACCCAGAAGTCCACATTCCCCTCGAGAATCTACAGCAGTTTCCTGCCTTCAATTCTTATACCTGCTCCTCT  1956
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2443  AGTACCCAGAAGTCCACATTCCCCTCGAGAATCTACAGCAGTTTCCTGCCTTCAATTCTTATACCTGCTCCTCT  2516

Query 1957  GATTCTGCTTTGGGTCCCACCAGCACCGAGGGCCATGGGGCCCTCTCCATTTCTCCTCTCAGCAGAAGTCCAGG  2030
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2517  GATTCTGCTTTGGGTCCCACCAGCACCGAGGGCCATGGGGCCCTCTCCATTTCTCCTCTCAGCAGAAGTCCAGG  2590

Query 2031  TTCCCATGCAGACTTTCTGCTGACCCCTCTGTCACCCACTGCCAGTCAGGGCAGTCCCTCATTCTGCGTTGGGA  2104
            ||||||||                                                                  
Sbjct 2591  TTCCCATG------------------------------------------------------------------  2598

Query 2105  GTCTGGAAGAAGACTCTCCCTTCCCTTCCTTTGCCCAGATGCTGAGGGTTGGAAAAGCAAAAGCAGATGTGTGG  2178
                                               |||||||||||||||||||||||||||||||||||||||
Sbjct 2599  -----------------------------------CAGATGCTGAGGGTTGGAAAAGCAAAAGCAGATGTGTGG  2637

Query 2179  CCCAAAACTGCTCCAAAGAAAGATGAGAACAGCTTAGTTCCTCCTGCCCCTGTGGACAGCGACGGGGAGAGTGA  2252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2638  CCCAAAACTGCTCCAAAGAAAGATGAGAACAGCTTAGTTCCTCCTGCCCCTGTGGACAGCGACGGGGAGAGTGA  2711

Query 2253  TAATTCAGACCGTGTTCCTGTGCCCAGTTTTCAAAATTCCTTCAGCCAAGCTATTGAAGCAGCCTTCATGAAAC  2326
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2712  TAATTCAGACCGTGTTCCTGTGCCCAGTTTTCAAAATTCCTTCAGCCAAGCTATTGAAGCAGCCTTCATGAAAC  2785

Query 2327  TGGACACACCAGCTACTTCAGATCCCCTCTCTGAAGAGAAAGGAGGAAAGAAAAGAAAAAAACAGAAACAGAAG  2400
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2786  TGGACACACCAGCTACTTCAGATCCCCTCTCTGAAGAGAAAGGAGGAAAGAAAAGAAAAAAACAGAAACAGAAG  2859

Query 2401  CTCCTGTTCAGCACCTCAGTCGTCCACACCAAG-----------------------------------------  2433
            |||||||||||||||||||||||||||||||||                                         
Sbjct 2860  CTCCTGTTCAGCACCTCAGTCGTCCACACCAAGTGACACTACTGGCCCAGGCTACCTTCTCCATCTGGTTTTTG  2933

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 2934  TTTTTGTTTTTTTTTCCCCCATGCTTTTGTTTGGCTGCTGTAATTTTTAAGTATTTGAGTTTGAACAGATTAGC  3007

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3008  TCTGGGGGGAGGGGGTTTCCACAATGTGAGGGGGAACCAAGAAAATTTTAAATACAGTGTATTTTCCAGCTTCC  3081

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3082  TGTCTTTACACCAAAATAAAGTATTGACACAAGAGATCTCTTCCTGCCAAGGTTTTTAGTTCATTGCCAGTTTA  3155

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3156  GTCTTTTTGACCCATGTGTAATTAATTTTTCTCAACCCAAAGTAAGATTGAGTCCCCTTTGAGATGCATTAGAG  3229

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3230  CAGTCCAACCCAGAATGGCACACACTGCTCTGCTGTAGCATCATGTCAGGGCTTCCTGGACTCAGTACACCTCT  3303

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3304  CAGTTTGTCTTTTAAAAAACAGCTGAATCTTTACTACCTATTTAGTTCTCCTTGTTAAAGAAACAGGGGTGGGA  3377

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3378  ATAAAATGGATTTAGGACACCCAGTTTGAATTGCAGTTTTTTTTTTTCTGACACATGGCCAGGCTGTGGTGCCA  3451

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3452  GCTTAATGGAGTAGGCTGTCCTTGGCACTTGCATGTGTGAAAGGAGGGTTTTGCCTCTTCTTGAGCATGGCTTG  3525

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3526  AGTTGGTAAGGAAAGCTGTAACTCACGAAGCCCTGAGACCTGCTACCCCTAAGATCGAGCTTGTTTTCAGTGAC  3599

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3600  TGGCTTGAGTCATAGGAGGAGGAGTCTGGTACAGCTGCAGGAGAGCAGGGCCATCTGAAGCGGTAGCATTGCCA  3673

Query 2434  --------------------------------------------------------------------------  2433
                                                                                      
Sbjct 3674  CCATCTCCCTCTCATCTAGAGCAGTTTTCTTATGCCTTGGTTTGAGCTGAATTTGATGTGAATTCTTTTGCTGC  3747

Query 2434  ---------------------------------------------------------------------  2433
                                                                                 
Sbjct 3748  TTAATAAAGTGACCTCTAGGTGCATTAGAATGCGAAGGCAAATAGTTGCAATAAATCACCTGCACAAGC  3816

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