Construct: ORF TRCN0000467243

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001426.1_s317c1
Derived from:
ccsbBroadEn_07510
DNA Barcode:
AGGGGGGAGTATGCTCTATGCATA
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
RNF10 (9921)

Vector Information:

Vector Backbone:
pLX_317
Pol II Cassette 1:
SV40-PuroR
Pol II Cassette 2:
EF1a-TRCN0000467243
Selection Marker:
PuroR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9921 RNF10 ring finger protein 10 NM_014868.5 99.9% 99.8% 996G>T
2 human 9921 RNF10 ring finger protein 10 NM_001330474.2 99.3% 99.2% 996G>T;1253_1267del
3 human 9921 RNF10 ring finger protein 10 XM_017020282.1 93.6% 93.4% (many diffs)
4 human 9921 RNF10 ring finger protein 10 XM_005254013.2 93% 92.8% (many diffs)
5 human 9921 RNF10 ring finger protein 10 XM_017020283.2 86.9% 83.4% (many diffs)
6 human 9921 RNF10 ring finger protein 10 XR_001748934.2 74.9% (many diffs)
7 human 9921 RNF10 ring finger protein 10 XR_001748933.2 63.4% (many diffs)
8 human 9921 RNF10 ring finger protein 10 XR_944849.3 63.1% (many diffs)
9 human 9921 RNF10 ring finger protein 10 XR_001748935.2 62.5% (many diffs)
10 human 9921 RNF10 ring finger protein 10 XR_001748938.2 61.9% (many diffs)
11 human 9921 RNF10 ring finger protein 10 XR_001748937.2 61.7% (many diffs)
12 human 9921 RNF10 ring finger protein 10 XR_001748936.2 61% (many diffs)
13 human 9921 RNF10 ring finger protein 10 XR_243026.4 60.8% (many diffs)
14 human 9921 RNF10 ring finger protein 10 XR_001748939.1 59.5% (many diffs)
15 mouse 50849 Rnf10 ring finger protein 10 NM_016698.2 90.6% 91.8% (many diffs)
16 mouse 50849 Rnf10 ring finger protein 10 NM_001302448.1 90.5% 91.7% (many diffs)
17 mouse 50849 Rnf10 ring finger protein 10 NM_001302449.1 90.5% 91.7% (many diffs)
18 mouse 50849 Rnf10 ring finger protein 10 XM_017320970.2 90.4% 91.6% (many diffs)
19 mouse 50849 Rnf10 ring finger protein 10 XM_030254658.1 76.9% 78.4% (many diffs)
20 mouse 50849 Rnf10 ring finger protein 10 XM_006530404.1 76.8% 78.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2499
ORF length:
2433
Sequence:
1tcttccattt caggtgtcgt gaggctagca tcgattgatc aacaagtttg tacaaaaaag
61ttggcatgcc gctgagctcc cccaacgccg ccgccaccgc ctccgacatg gacaagaaca
121gcggctccaa cagctcctcc gcctcttcgg gcagcagcaa agggcaacag ccgccccgct
181ccgcctcggc ggggccagcc ggcgagtcta aacccaagag cgatggaaag aactccagtg
241gatccaagcg ttataatcgc aaacgtgaac tttcctaccc caaaaatgaa agttttaaca
301accagtcccg tcgctccagt tcacagaaaa gcaagacttt taacaagatg cctcctcaaa
361ggggcggcgg cagcagcaaa ctctttagct cttcttttaa tggtggaaga cgagatgagg
421tagcagaggc tcaacgggca gagtttagcc ctgcccagtt ctctggtcct aagaagatca
481acctgaacca cttgttgaat ttcacttttg aaccccgtgg ccagacgggt cactttgaag
541gcagtggaca tggtagctgg ggaaagagga acaagtgggg acataagcct tttaacaagg
601aactcttttt acaggccaac tgccaatttg tggtgtctga agaccaagac tacacagctc
661attttgctga tcctgataca ttagttaact gggactttgt ggaacaagtg cgcatttgta
721gccatgaagt gccatcttgc ccaatatgcc tctatccacc tactgcagcc aagataaccc
781gttgtggaca catcttctgc tgggcatgca tcctgcacta tctttcactg agtgagaaga
841cgtggagtaa atgtcccatc tgttacagtt ctgtgcataa gaaggatctc aagagtgttg
901ttgccacaga gtcacatcag tatgttgttg gtgataccat tacgatgcag ctgatgaaga
961gggagaaagg ggtgttggtg gctttgccca aatccaaatg gatgaatgta gaccatccca
1021ttcatctagg agatgaacag cacagccagt actccaagtt tctgctggcc tctaaggagc
1081aggtgctgca ccgggtagtt ctggaggaga aagtagcact agagcagcag ctggcagagg
1141agaagcacac tcccgagtcc tgctttattg aggcagctat ccaggagctc aagactcggg
1201aagaggctct gtcgggattg gccggaagca gaagggaggt cactggtgtt gtggctgctc
1261tggaacaact ggtgctgatg gctcccttgg cgaaggagtc tgtttttcaa cccaggaagg
1321gtgtgctgga gtatctgtct gccttcgatg aagaaaccac ggaagtttgt tctctggaca
1381ctccttctag acctcttgct ctccctctgg tagaagagga ggaagcagtg tctgaaccag
1441agcctgaggg gttgccagag gcctgtgatg acttggagtt agcagatgac aatcttaaag
1501aggggaccat ttgcactgag tccagccagc aggaacccat caccaagtca ggcttcacac
1561gcctcagcag ctctccttgt tactactttt accaagcgga agatggacag catatgttcc
1621tgcaccctgt gaatgtgcgc tgcctcgtgc gggagtacgg cagcctggag aggagccccg
1681agaagatctc agcaactgtg gtggagattg ctggctactc catgtctgag gatgttcgac
1741agcgtcacag atatctctct cacttgccac tcacctgtga gttcagcatc tgtgaactgg
1801ctttgcaacc tcctgtggtc tctaaggaaa ccctagagat gttctcagat gacattgaga
1861agaggaaacg tcagcgccaa aagaaggctc gggaggaacg ccgccgagag cgcaggattg
1921agatagagga gaacaagaaa cagggcaagt acccagaagt ccacattccc ctcgagaatc
1981tacagcagtt tcctgccttc aattcttata cctgctcctc tgattctgct ttgggtccca
2041ccagcaccga gggccatggg gccctctcca tttctcctct cagcagaagt ccaggttccc
2101atgcagactt tctgctgacc cctctgtcac ccactgccag tcagggcagt ccctcattcT
2161GCGTTGGGAG TCTGGAAGAA GACTCTCCCT TCCCTTCCTT TGCCCAGATG CTGAGGGTTG
2221GAAAAGCAAA AGCAGATGTG TGGCCCAAAA CTGCTCCAAA GAAAGATGAG AACAGCTTAG
2281TTCCTCCTGC CCCTGTGGAC AGCGACGGGG AGAGTGATAA TTCAGACCGT GTTCCTGTGC
2341CCAGTTTTCA AAATTCCTTC AGCCAAGCTA TTGAAGCAGC CTTCATGAAA CTGGACACAC
2401CAGCTACTTC AGATCCCCTC TCTGAAGAGA AAGGAGGAAA GAAAAGAAAA AAACAGAAAC
2461AGAAGCTCCT GTTCAGCACC TCAGTCGTCC ACACCAAGTG CCCAACTTTC TTGTACAAAG
2521TGGTTGATAT CGGTAAGCCT ATCCCTAACC CTCTCCTCGG TCTCGATTCT ACGTAGTAAT
2581GAACTAGTCC GTAACTTGAA AGTATTTCGA TTTCTTGGCT TTATATATCT TGTGGAAAGG
2641ACGAAGGGGG GAGTATGCTC TATGCATAAC GCGTTAAGTC gacaatcaac ctctggatta
2701caaaatttgt gaaagatt

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