Nucleotide Global Alignment
Description
- Query:
- TRCN0000467690
- Subject:
- XR_002957452.1
- Aligned Length:
- 4464
- Identities:
- 1557
- Gaps:
- 2907
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATTAAGTCTGTTAGTTGTTTGAATCACATAAAATTGTGTGTGCACGTTCATGTACACATGTGCACACATGTAAC 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CTCTGTGATTCTTGTGGGTATTTTTTTAAGAAGAAAGGAATAGAAAGCAAAGAAAAATAAAAAATACTGAAAAG 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AAAAGACTGAAAGAGTAGAAGATAAGGAGAAAAGTACGACAGAGACAAGGAAAGTAAGAGAGAGAGAGAGCTCT 222
Query 1 ---------------ATGAGCCCCCTTTGGTGGGGGTTTCTGCTCAGTTGCTTGGGCTGCAAAATCCTGCCAGG 59
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CCCAATTATAAAGCCATGAGCCCCCTTTGGTGGGGGTTTCTGCTCAGTTGCTTGGGCTGCAAAATCCTGCCAGG 296
Query 60 AGCCCAGGGTCAGTTCCCCCGAGTCTGCATGACGGTGGACAGCCTAGTGAACAAGGAGTGCTGCCCACGCCTGG 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 AGCCCAGGGTCAGTTCCCCCGAGTCTGCATGACGGTGGACAGCCTAGTGAACAAGGAGTGCTGCCCACGCCTGG 370
Query 134 GTGCAGAGTCGGCCAATGTCTGTGGCTCTCAGCAAGGCCGGGGGCAGTGCACAGAGGTGCGAGCCGACACAAGG 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GTGCAGAGTCGGCCAATGTCTGTGGCTCTCAGCAAGGCCGGGGGCAGTGCACAGAGGTGCGAGCCGACACAAGG 444
Query 208 CCCTGGAGTGGTCCCTACATCCTACGAAACCAGGATGACCGTGAGCTGTGGCCAAGAAAATTCTTCCACCGGAC 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CCCTGGAGTGGTCCCTACATCCTACGAAACCAGGATGACCGTGAGCTGTGGCCAAGAAAATTCTTCCACCGGAC 518
Query 282 CTGCAAGTGCACAGGAAACTTTGCCGGCTATAATTGTGGAGACTGCAAGTTTGGCTGGACCGGTCCCAACTGCG 355
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CTGCAAGTGCACAGGAAACTTTGCCGGCTATAATTGTGGAGACTGCAAGTTTGGCTGGACCGGTCCCAACTGCG 592
Query 356 AGCGGAAGAAACCACCAGTGATTCGGCAGAACATCCATTCCTTGAGTCCTCAGGAAAGAGAGCAGTTCTTGGGC 429
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 AGCGGAAGAAACCACCAGTGATTCGGCAGAACATCCATTCCTTGAGTCCTCAGGAAAGAGAGCAGTTCTTGGGC 666
Query 430 GCCTTAGATCTCGCGAAGAAGAGAGTACACCCCGACTACGTGATCACCACACAACACTGGCTGGGCCTGCTTGG 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GCCTTAGATCTCGCGAAGAAGAGAGTACACCCCGACTACGTGATCACCACACAACACTGGCTGGGCCTGCTTGG 740
Query 504 GCCCAATGGAACCCAGCCGCAGTTTGCCAACTGCAGTGTTTATGATTTTTTTGTGTGGCTCCATTATTATTCTG 577
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GCCCAATGGAACCCAGCCGCAGTTTGCCAACTGCAGTGTTTATGATTTTTTTGTGTGGCTCCATTATTATTCTG 814
Query 578 TTAGAGATACATTATTAGGACCAGGACGCCCCTACAGGGCCATAGATTTCTCACATCAAGGACCTGCATTTGTT 651
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TTAGAGATACATTATTAGGACCAGGACGCCCCTACAGGGCCATAGATTTCTCACATCAAGGACCTGCATTTGTT 888
Query 652 ACCTGGCACCGGTACCATTTGTTGTGTCTGGAAAGAGATCTCCAGCGACTCATTGGCAATGAGTCTTTTGCTTT 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 ACCTGGCACCGGTACCATTTGTTGTGTCTGGAAAGAGATCTCCAGCGACTCATTGGCAATGAGTCTTTTGCTTT 962
Query 726 GCCCTACTGGAACTTTGCCACTGGGAGGAACGAGTGTGATGTGTGTACAGACCAGCTGTTTGGGGCAGCGAGAC 799
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 GCCCTACTGGAACTTTGCCACTGGGAGGAACGAGTGTGATGTGTGTACAGACCAGCTGTTTGGGGCAGCGAGAC 1036
Query 800 CAGACGATCCGACTCTGATTAGTCGGAACTCAAGATTCTCCAGCTGGGAAACTGTCTGTGATAGCTTGGATGAC 873
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 CAGACGATCCGACTCTGATTAGTCGGAACTCAAGATTCTCCAGCTGGGAAACTGTCTGTGATAGCTTGGATGAC 1110
Query 874 TACAACCACCTGGTCACCTTGTGCAATGGAACCTATGAAGGTTTGCTGAGAAGAAATCAAATGGGAAGAAACAG 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 TACAACCACCTGGTCACCTTGTGCAATGGAACCTATGAAGGTTTGCTGAGAAGAAATCAAATGGGAAGAAACAG 1184
Query 948 CATGAAATTGCCAACCTTAAAAGACATACGAGATTGCCTGTCTCTCCAGAAGTTTGACAATCCTCCCTTCTTCC 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 CATGAAATTGCCAACCTTAAAAGACATACGAGATTGCCTGTCTCTCCAGAAGTTTGACAATCCTCCCTTCTTCC 1258
Query 1022 AGAACTCTACCTTCAGTTTCAGGAATGCTTTGGAAGGGTTTGATAAAGCAGATGGGACTCTGGATTCTCAAGTG 1095
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 AGAACTCTACCTTCAGTTTCAGGAATGCTTTGGAAGGGTTTGATAAAGCAGATGGGACTCTGGATTCTCAAGTG 1332
Query 1096 ATGAGCCTTCATAATTTGGTTCATTCCTTCCTGAACGGGACAAACGCTTTGCCACATTCAGCCGCCAATGATCC 1169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333 ATGAGCCTTCATAATTTGGTTCATTCCTTCCTGAACGGGACAAACGCTTTGCCACATTCAGCCGCCAATGATCC 1406
Query 1170 CATTTTTGT----------------------------------------------------------------- 1178
|||||||||
Sbjct 1407 CATTTTTGTGAAAAGAGAAAGCGACCAAGGAACTCCCTTCCCTGCATGTGCTGGTAACCATGAGCCTGGGAGGC 1480
Query 1179 --------GGTTCTTCATTCCTTTACTGATGCCATCTTTGATGAGTGGATGAAAAGATTTAATCCTCCTGCAGA 1244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 TCTACTCAGGTTCTTCATTCCTTTACTGATGCCATCTTTGATGAGTGGATGAAAAGATTTAATCCTCCTGCAGA 1554
Query 1245 TGCCTGGCCTCAGGAGCTGGCCCCTATTGGTCACAATCGGATGTACAACATGGTTCCTTTCTTCCCTCCAGTGA 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555 TGCCTGGCCTCAGGAGCTGGCCCCTATTGGTCACAATCGGATGTACAACATGGTTCCTTTCTTCCCTCCAGTGA 1628
Query 1319 CTAATGAAGAACTCTTTTTAACCTCAGACCAACTTGGCTACAGCTATGCCATCGATCTGCCAGTTTCAGTTGAA 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629 CTAATGAAGAACTCTTTTTAACCTCAGACCAACTTGGCTACAGCTATGCCATCGATCTGCCAGTTTCAGTTGAA 1702
Query 1393 GAAACTCCAGGTTGGCCCACAACTCTCTTAGTAGTCATGGGAACACTGGTGGCTTTGGTTGGTCTTTTTGTGCT 1466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703 GAAACTCCAGGTTGGCCCACAACTCTCTTAGTAGTCATGGGAACACTGGTGGCTTTGGTTGGTCTTTTTGTGCT 1776
Query 1467 GTTGGCTTTTCTTCAATATAGAAGACTTCGAAAAGGATATACACCCCTAATGGAGACACATTTAAGCAGCAAGA 1540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777 GTTGGCTTTTCTTCAATATAGAAGACTTCGAAAAGGATATACACCCCTAATGGAGACACATTTAAGCAGCAAGA 1850
Query 1541 GATACACAGAAGAAGCC--------------------------------------------------------- 1557
|||||||||||||||||
Sbjct 1851 GATACACAGAAGAAGCCTAGGGTGCTCATGCCTTACCTAAGAGAAGAGGCTGGCCAAGCCACAGTTCTGACGCT 1924
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 1925 GACAATAAAGGAACTAATCCTCACTGTTCCTTCTTGAGTTGAAGATCTTTGACATAGGTTCTTCTATAGTGATG 1998
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 1999 ATGATCTCATTCAGAAGATGCTTAGCTGTAGTTTCCGCTTTGCTTGCTTGTTTAACAAACCCAACTAAAGTGCT 2072
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2073 TGAGGCTACCTCTACCTTCAAATAAAGATAGACCTGACAATTTGTGATATCTAATAATAACCCCCCCCCCAATA 2146
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2147 TTGATTAAGCCTCCTCCTTTTCTGAAAGCATTTAAAAAAAAACAAAAAAAATCCCAAAACATTGATCCAGGGGA 2220
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2221 GTCATTTAAATTTGCAGGTCAGTGCAATGTGAGACCTGGCCAAGACCATACATCAATCTTTCTTAGCCCCAGTG 2294
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2295 TCTTTATTGGTAATGCCATGGAGGTGGGAGTTGGTAGGTGCTAGATGAGTCTCCAAGATCCCTTTTAGCTATAA 2368
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2369 ACATCTCTGCTTCTAGGCACCCTCCTGATTATCTTCCTTGGGCTTCTTTTTCTTCTTTTCTCTATATTTTTCCT 2442
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2443 CTCCAGCTTAGAAGATGAGAATAAGCCTTGTTTTCTTTACAGGATGGAAAATGACTAAATGAAGGATCAATTCC 2516
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2517 ACTCTATTGTGTAAACTAGATTTTACGGATTTTACTTAAAATCTGCAGTTTTAAACAGTAGACCTATATTACAG 2590
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2591 GATTCAATAGCTGGATACACATTGATTCTATAGTGATAAATAGAGAAGATAATAAAATTATAGAGTTTCCTGGT 2664
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2665 TAGTTGATATGCTACTGTAAACCTATTAACAAATACAGAATTACTCTTTCCAAGGAAGGCTGACTGAAGGCTGG 2738
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2739 TGAGGCTGTAAACCTGAACATGAGACAATTTGACTTGAGTCCCATTACTCTGAGGTCTCTTTGGCTGATCCTCT 2812
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2813 ACCAATTTCTTTACTAGGTAGCCTCAGATGAAAAATTATTCCCACATAATGCACTGGGCTTATTTTTAAGCATT 2886
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2887 GATGTTAGATTGATTAATGTTGCCGAATACTCACAGTTACTTATGAATGCTGATCAATTAAGTCTTATCATTTG 2960
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 2961 AAAGCAAACCATCTGTACAAAACATGACAATTCAGAATTAAGTGGTTATATTCTGCTATGCAATCATCAGATCA 3034
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3035 TGAGGAATAAGAATGAGACAATCTTTACTACGATGTTCAGACTTATCATGATGGACCCCACTTCAGAGAAGTTA 3108
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3109 ATGGCTCTTGAGATTTCCAGGCAAATTTCATCTGCTCATATCTGGTTTCTGTGCATCAGGAGTGAGACTGAAGT 3182
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3183 TCTAGGGCGTGGCTTGTCTGTCGAGGCCCCTCTCTACTGGAATGAATGAATGTAAAGAATGGGTGTTAAGAGGT 3256
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3257 CCCTGGAGCTGCCTTCAACATAAGGGGTCCTAGAGGGTGCAAGACTCATCAAGAACCAGTTTACCCCATGCAAA 3330
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3331 AGGACTGCTAAAGCCAGAGAAATGGACAAAGCCCAGTTGGAACTGAATTTGAATCTCATAAAGCTACAGGTGCA 3404
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3405 TCTGAGAGCAGGCTCAGTGGTGAAGATCAAGATAGCCCGGTAAAGCCCTGCTTGGGCTTTTTAGCCTCAGCCAC 3478
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3479 ATGGATACCTCTCAGTTCCTGCCATTAACAATATTCATGGAAAATACAGCACTGTGTCTTTCACATGCTCCACT 3552
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3553 CTGGAAGGTTTATGCTCTGAGCTCAGGATAGTTGGGGAACACATTTTTAAATCTTGGTTTTAAACAAAAAGAGA 3626
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3627 AATTTATTAAAATGGAGATATAATTGTGCATGGTACATATATTTCTGAAAAGTTATGTATAAATCAATTATGTT 3700
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3701 AAAAGCGCCAGAAGTTACTTTTTATAAGTGAACTATTACGAATAATTTCATAAAGCAAATAACCACCTCTAGCT 3774
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3775 TATCTGTCAGGTATATCAGAATTCTCATATATCATAGTCTCATAAGACTTGGTTAAAGCAGATCTATCTTAGGT 3848
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3849 AGGAAAAAATAGTAATCGATTATACTTAGCTGCTTTTATCTGTAGTGTGGGTGACTTTTTATAACTATTATGTT 3922
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3923 TTATAATGTCTTCCTGAGAGAATTTCCTAATTTTGTAGTTCATATAAGAGAAATACAATTTTCTAGCATTTTCT 3996
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 3997 GACCTTACAATAAATCAATTATGAATGCATTTTAACAAATATTAAGGTAGGATAAACCAACAGAATAAAAAGTT 4070
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 4071 GGTATTTACTTACATTGAATATCATGCAAATAAACTCAGAAAATGTCACCAAATACTGTGGGCTATATTTCTCA 4144
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 4145 ATGATAGGGGGAAGAATTCAACCTTGGAGAAAATGACCAGATCACTTTACTGCTTATATCTTCAGTATTAGAAA 4218
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 4219 AACTGCATGTATGATTTTAATAGAAATGCTTTTTATAAAGCTAACATTCAGAAATGGGATAAAATGCAATAACA 4292
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 4293 TCTTTCCTTTGTGCATTAAATTCCCTTCTAATTCTAAAATTGACATTTGTATCTTGCTTAGGATTTAACATTGT 4366
Query 1558 -------------------------------------------------------------------------- 1557
Sbjct 4367 TAATTATAATACTTTTAATGACTAGTTTTAATCTCATTATTAAGAAGTAGAAAACTTACTAAAAAGGAAACTAA 4440
Query 1558 ------------------------ 1557
Sbjct 4441 AAATAAATGTTGTTTTGCAGATTA 4464
