Nucleotide Global Alignment

Description

• Query: TRCN0000467712
• Subject: XR_001744894.2
• Aligned Length: 3724
• Identities: 2067
• Gaps: 1656

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  AGATGCAAAATGTGTCTCTGGCCAGCAGGAGGAAGGAAGAGGAAGTGAGAGCAGCGGCAGCCGGCGGTGCAGCA  74

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct   75  GCCGGCCGACCCAGAGTGTAAGTGCGTGTGCTGGGGCGAGCGGGAGCGGGCGAGGATGGGCACAGGATAGAGGC  148

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  149  AGAGCCACCCACGCCGCCGCGGCCCCACGCTGGGCGACAGAGCCTCCAGTTCCCCTTCAATGGTGGCGGGTCGC  222

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct  223  CGGAGCTCTGATCGCCGGGAACCCTTGCCGCTGCTGTCCTGCGACCCCAAGCAGGTATAGACACGTGTGGCCGT  296

Query    1  -----------------------------------------------------ATGCCGCCACCCGCGGACATC  21
                                                                 |||||||||||||||||||||
Sbjct  297  TTACGCTGTAGGATCCTCATTCCCACTGGCTTTGAACATTTTGGGGACTTACAATGCCGCCACCCGCGGACATC  370

Query   22  GTCAAGGTGGCCATAGAATGGCCGGGCGCCTACCCCAAACTCATGGAAATTGATCAGAAAAAACCACTGTCTGC  95
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  371  GTCAAGGTGGCCATAGAATGGCCGGGCGCCTACCCCAAACTCATGGAAATTGATCAGAAAAAACCACTGTCTGC  444

Query   96  AATAATAAAGGAAGTCTGTGATGGGTGGTCTCTTGCCAACCATGAATATTTTGCACTCCAGCATGCCGATAGTT  169
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  445  AATAATAAAGGAAGTCTGTGATGGGTGGTCTCTTGCCAACCATGAATATTTTGCACTCCAGCATGCCGATAGTT  518

Query  170  CAAACTTCTATATCACAGAAAAGAACCGCAATGAGATAAAAAATGGCACTATCCTTCGATTAACCACATCTCCA  243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  519  CAAACTTCTATATCACAGAAAAGAACCGCAATGAGATAAAAAATGGCACTATCCTTCGATTAACCACATCTCCA  592

Query  244  GCTCAGAACGCCCAGCAGCTCCATGAACGAATCCAGTCCTCGAGTATGGATGCCAAGCTGGAAGCCCTGAAGGA  317
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  593  GCTCAGAACGCCCAGCAGCTCCATGAACGAATCCAGTCCTCGAGTATGGATGCCAAGCTGGAAGCCCTGAAGGA  666

Query  318  CTTGGCCAGCCTCTCCCGGGATGTCACGTTTGCCCAGGAGTTTATAAACCTGGACGGTATCTCTCTCCTCACGC  391
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  667  CTTGGCCAGCCTCTCCCGGGATGTCACGTTTGCCCAGGAGTTTATAAACCTGGACGGTATCTCTCTCCTCACGC  740

Query  392  AGATGGTAGAGAGCGGCACTGAGCGATACCAGAAATTGCAGAAGATCATGAAGCCTTGCTTTGGAGACATGCTG  465
            |||||||.||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  741  AGATGGTGGAGAGCGGCACTGAGCGATACCAGAAATTGCAGAAGATCATGAAGCCTTGCTTTGGAGACATGCTG  814

Query  466  TCCTTCACCCTGACGGCCTTCGTTGAGCTGATGGACCATGGCATAGTGTCCTGGGATACATTTTCGGTGGCGTT  539
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  815  TCCTTCACCCTGACGGCCTTCGTTGAGCTGATGGACCATGGCATAGTGTCCTGGGATACATTTTCGGTGGCGTT  888

Query  540  CATTAAGAAGATAGCAAGTTTTGTGAACAAGTCAGCCATAGACATCTCGATCCTGCAGCGGTCCTTGGCCATTT  613
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  889  CATTAAGAAGATAGCAAGTTTTGTGAACAAGTCAGCCATAGACATCTCGATCCTGCAGCGGTCCTTGGCCATTT  962

Query  614  TGGAGTCGATGGTGCTCAATAGCCATGACCTCTACCAGAAAGTGGCGCAGGAGATCACCATCGGCCAGCTCATT  687
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  963  TGGAGTCGATGGTGCTCAATAGCCATGACCTCTACCAGAAAGTGGCGCAGGAGATCACCATCGGCCAGCTCATT  1036

Query  688  CCACACCTGCAAGGGTCAGATCAAGAAATCCAAACCTATACTATTGCAGTGATTAATGCGCTTTTCCTGAAGGC  761
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037  CCACACCTGCAAGGGTCAGATCAAGAAATCCAAACCTATACTATTGCAGTGATTAATGCGCTTTTCCTGAAGGC  1110

Query  762  TCCTGATGAGAGGAGGCAGGAGATGGCGAATATTTTGGCTCAGAAGCAACTGCGTTCCATCATTTTAACACATG  835
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111  TCCTGATGAGAGGAGGCAGGAGATGGCGAATATTTTGGCTCAGAAGCAACTGCGTTCCATCATTTTAACACATG  1184

Query  836  TCATCCGAGCCCAGCGGGCCATCAACAATGAGATGGCGCACCAGCTGTATGTTCTACAAGTGCTCACCTTTAAC  909
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185  TCATCCGAGCCCAGCGGGCCATCAACAATGAGATGGCGCACCAGCTGTATGTTCTACAAGTGCTCACCTTTAAC  1258

Query  910  CTCCTGGAAGACAGGATGATGACCAAAATGGACCCCCAGGACCAGGCTCAGAGGGACATCATATTTGAACTTCG  983
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259  CTCCTGGAAGACAGGATGATGACCAAAATGGACCCCCAGGACCAGGCTCAGAGGGACATCATATTTGAACTTCG  1332

Query  984  AAGAATTGCTTTTGATGCTGAGTCTGAACCTAACAACAGCAGTGGCAGCATGGAGAAACGCAAGTCCATGTACA  1057
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1333  AAGAATTGCTTTTGATGCTGAGTCTGAACCTAACAACAGCAGTGGCAGCATGGAGAAACGCAAGTCCATGTACA  1406

Query 1058  CGCGAGATTATAAGAAGCTTGGGTTCATTAATCATGTCAACCCTGCCATGGACTTCACGCAGACTCCACCTGGG  1131
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1407  CGCGAGATTATAAGAAGCTTGGGTTCATTAATCATGTCAACCCTGCCATGGACTTCACGCAGACTCCACCTGGG  1480

Query 1132  ATGTTGGCTCTGGACAACATGCTGTACTTTGCCAAGCACCACCAAGATGCCTACATCCGGATTGTGCTTGAGAA  1205
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481  ATGTTGGCTCTGGACAACATGCTGTACTTTGCCAAGCACCACCAAGATGCCTACATCCGGATTGTGCTTGAGAA  1554

Query 1206  CAGTAGTCGAGAAGACAAGCATGAATGTCCCTTTGGCCGCAGTAGTATAGAGCTGACCAAGATGCTATGTGAGA  1279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1555  CAGTAGTCGAGAAGACAAGCATGAATGTCCCTTTGGCCGCAGTAGTATAGAGCTGACCAAGATGCTATGTGAGA  1628

Query 1280  TCTTGAAAGTGGGCGAGTTGCCTAGTGAGACCTGCAACGACTTCCACCCGATGTTCTTCACCCACGACAGATCC  1353
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1629  TCTTGAAAGTGGGCGAGTTGCCTAGTGAGACCTGCAACGACTTCCACCCGATGTTCTTCACCCACGACAGATCC  1702

Query 1354  TTTGAGGAGTTTTTCTGCATCTGTATCCAGCTCCTGAACAAGACATGGAAGGAAATGAGGGCAACTTCTGAAGA  1427
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1703  TTTGAGGAGTTTTTCTGCATCTGTATCCAGCTCCTGAACAAGACATGGAAGGAAATGAGGGCAACTTCTGAAGA  1776

Query 1428  CTTCAACAAGGTAATGCAGGTGGTGAAGGAGCAGGTTATGAGAGCACTTACAACCAAGCCTAGCTCCCTGGACC  1501
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1777  CTTCAACAAGGTAATGCAGGTGGTGAAGGAGCAGGTTATGAGAGCACTTACAACCAAGCCTAGCTCCCTGGACC  1850

Query 1502  AGTTCAAGAGCAAACTGCAGAACCTGAGCTACACTGAGATCCTGAAAATCCGCCAGTCCGAGAGGATGAACCAG  1575
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1851  AGTTCAAGAGCAAACTGCAGAACCTGAGCTACACTGAGATCCTGAAAATCCGCCAGTCCGAGAGGATGAACCAG  1924

Query 1576  GAAGATTTCCAGTCCCGCCCGATTTTGGAACTAAAGGAGAAGATTCAGCCAGAAATCTTAGAGCTGATCAAACA  1649
            ||||||||||||||||||||||||||                                                
Sbjct 1925  GAAGATTTCCAGTCCCGCCCGATTTT------------------------------------------------  1950

Query 1650  GCAACGCCTGAACCGCCTTGTGGAAGGGACCTGCTTTAGGAAACTCAATGCCCGGCGGAGGCAAGACAAGTTTT  1723
                                                                             |||||||||
Sbjct 1951  -----------------------------------------------------------------ACAAGTTTT  1959

Query 1724  GGTATTGTCGGCTTTCGCCAAATCACAAAGTCCTGCATTACGGAGACTTAGAAGAGAGTCCTCAGGGAGAAGTG  1797
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1960  GGTATTGTCGGCTTTCGCCAAATCACAAAGTCCTGCATTACGGAGACTTAGAAGAGAGTCCTCAGGGAGAAGTG  2033

Query 1798  CCCCACGATTCCTTGCAGGACAAACTGCCGGTGGCAGATATCAAAGCCGTGGTGACGGGAAAGGACTGCCCTCA  1871
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2034  CCCCACGATTCCTTGCAGGACAAACTGCCGGTGGCAGATATCAAAGCCGTGGTGACGGGAAAGGACTGCCCTCA  2107

Query 1872  TATGAAAGAGAAAGGTGCCCTTAAACAAAACAAGGAGGTGCTTGAACTCGCTTTCTCCATCTTGTATGACTCAA  1945
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2108  TATGAAAGAGAAAGGTGCCCTTAAACAAAACAAGGAGGTGCTTGAACTCGCTTTCTCCATCTTGTATGACTCAA  2181

Query 1946  ACTGCCAACTGAACTTCATCGCTCCTGACAAGCATGAGTACTGTATCTGGACGGATGGACTGAATGCGCTACTC  2019
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2182  ACTGCCAACTGAACTTCATCGCTCCTGACAAGCATGAGTACTGTATCTGGACGGATGGACTGAATGCGCTACTC  2255

Query 2020  GGGAAGGACATGATGAGCGACCTGACGCGGAATGACCTGGACACCCTGCTCAGCATGGAAATCAAGCTCCGCCT  2093
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2256  GGGAAGGACATGATGAGCGACCTGACGCGGAATGACCTGGACACCCTGCTCAGCATGGAAATCAAGCTCCGCCT  2329

Query 2094  CCTGGACCTGGAAAACATCCAGATCCCTGACGCACCTCCGCCGATTCCCAAGGAGCCCAGCAACTATGACTTCG  2167
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2330  CCTGGACCTGGAAAACATCCAGATCCCTGACGCACCTCCGCCGATTCCCAAGGAGCCCAGCAACTATGACTTCG  2403

Query 2168  TCTATGACTGTAAC------------------------------------------------------------  2181
            ||||||||||||||                                                            
Sbjct 2404  TCTATGACTGTAACTGAAGTGGCCGGGCCCAGACATGCCCCTTCCAAAACTGGAACACCTAGCTAACAGGAGAG  2477

Query 2182  --------------------------------------------------------------------------  2181
                                                                                      
Sbjct 2478  AGGAATGAAAACACACCCACGCCTTGGAACCGTCCTTTGGTAAAGGGAAGCTGTGGGTCCACATTCCCTTCAGC  2551

Query 2182  --------------------------------------------------------------------------  2181
                                                                                      
Sbjct 2552  ATCACCTCTAGCCCTGGCAACTTTCAGCCCCTAGCTGGCATCTTGCTCACCGCCCTGATTCTGTTCCTCGGCTC  2625

Query 2182  --------------------------------------------------------------------------  2181
                                                                                      
Sbjct 2626  CACTGCTTCAGGTCACTTCCCATGGCTGCAGTCCACTGGTGGGACAAGAGCAAAGCCCACTGCCAGTAAGAAGG  2699

Query 2182  --------------------------------------------------------------------------  2181
                                                                                      
Sbjct 2700  CCAAAGGGCCCTTCCATCCTAGCCCTCTGCAGGCATGCCCTTCCTTCCCTTGGGCAGGAAAGCCAGCAGCCCCA  2773

Query 2182  --------------------------------------------------------------------------  2181
                                                                                      
Sbjct 2774  GACTGCCCAAAAACTTGCCCACCAGACCAAGGGCAGTGCCCCAAGGCCCCTGTCTGGAGGAAATGGCCTAGCTA  2847

Query 2182  --------------------------------------------------------------------------  2181
                                                                                      
Sbjct 2848  TTTGATGAGAAGACCAAACCCCACATCCTCCTTTCCCCTCTCTCTAGAATCATCTCGCACCACCAGTTACACTT  2921

Query 2182  --------------------------------------------------------------------------  2181
                                                                                      
Sbjct 2922  GAATTAAGATCTGCGCTCAAATCTCCTCCCACCTCTCTCCCTGCTTTTGCCTTGCTCTGTTCCTCTTTGGTCCC  2995

Query 2182  --------------------------------------------------------------------------  2181
                                                                                      
Sbjct 2996  AAGAGCAGCAGCCGCAGCCTCCTCGTGATCCTCCCTAGCATAAATTTCCCAAACAGTCCACAGGTCCCATGCCC  3069

Query 2182  --------------------------------------------------------------------------  2181
                                                                                      
Sbjct 3070  ACTTTGCGTCTGCACTGTGATCGTGACAAATCTTCCCTCCTCACCAGCTAGTCTGGGGTTTCCTCTCCCTGCCC  3143

Query 2182  --------------------------------------------------------------------------  2181
                                                                                      
Sbjct 3144  CAGGCCAGAACTGCCTTCTTCATTTCCACCCACGCTCCCAGCCTCTTAGCTGAAAGCACAAATGGTGAAATCAG  3217

Query 2182  --------------------------------------------------------------------------  2181
                                                                                      
Sbjct 3218  TAGTCTCGCTCCATCTCTAATAGACTAAACCTAAATGCCTCTAGGACGGACTGTTGCTATCCAAGCGTTTGGTG  3291

Query 2182  --------------------------------------------------------------------------  2181
                                                                                      
Sbjct 3292  TTACCTTCTCCTGGGAGGTCCTGCTGCAACTCAAGTTCCACAGGATGGTCAAGCTGTCAGACATCCAAGTTTAC  3365

Query 2182  --------------------------------------------------------------------------  2181
                                                                                      
Sbjct 3366  ATCATTGTAATTATTACTGGTATTTACAATTTGCAAGAGTTTTGGGTTAGTTTTTTTTTTTTTTTTTGCTTTGT  3439

Query 2182  --------------------------------------------------------------------------  2181
                                                                                      
Sbjct 3440  TTTTGTACAAAAGAGTCTAACATTTTTTGCCAAACAGATATATATTTAATGAAAAGAAGAGATACATAAATGTG  3513

Query 2182  --------------------------------------------------------------------------  2181
                                                                                      
Sbjct 3514  TGAATTTCCAGTTTTTTTTTAATTATTTTAATCCCAAACATCTTCCTGAAAATAACATTCCCTTAAACATGCTG  3587

Query 2182  ------------------------  2181
                                    
Sbjct 3588  TGGAATAAAATGGATTGTGATGAT  3611