Nucleotide Global Alignment
Description
- Query:
- TRCN0000467762
- Subject:
- XR_002959801.1
- Aligned Length:
- 6172
- Identities:
- 1082
- Gaps:
- 5089
Alignment
Query 1 ----------------------------ATGGCGGACACCGACCTGTTCATGGAATGTGAGGAGGAGGAGTTGG 46
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CGAGACAATGAGAGGGGGATGGGGCCGCATGGCGGACACCGACCTGTTCATGGAATGTGAGGAGGAGGAGTTGG 74
Query 47 AGCCATGGCAGAAAATCAGTGATGTCATTGAGGACTCTGTAGTTGAAGATTATAATTCAGTGGATAAAACTACC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 AGCCATGGCAGAAAATCAGTGATGTCATTGAGGACTCTGTAGTTGAAGATTATAATTCAGTGGATAAAACTACC 148
Query 121 ACAGTTTCTGTGAGCCAGCAGCCAGTCTCGGCTCCAGTGCCCATCGCTGCCCATGCTTCTGTTGCTGGGCACCT 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 149 ACAGTTTCTGTGAGCCAGCAGCCAGTCTCGGCTCCAGTGCCCATCGCTGCCCATGCTTCTGTTGCTGGGCACCT 222
Query 195 CTCTACATCCACCACCGTTAGTAGCAGCGGGGCACAGAACAGCGACAGTACAAAGAAGACTCTTGTCACACTAA 268
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 223 CTCTACATCCACCACCGTTAGTAGCAGCGGGGCACAGAACAGCGACAGTACAAAGAAGACTCTTGTCACACTAA 296
Query 269 TTGCCAACAACAATGCTGGCAATCCTTTGGTCCAGCAAGGTGGACAGCCACTCATCCTGACCCAGAATCCAGCC 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TTGCCAACAACAATGCTGGCAATCCTTTGGTCCAGCAAGGTGGACAGCCACTCATCCTGACCCAGAATCCAGCC 370
Query 343 CCAGGTCTGGGCACAATGGTTACTCAACCAGTATTGAGGCCTGTTCAGGTCATGCAGAATGCCAATCATGTGAC 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 CCAGGTCTGGGCACAATGGTTACTCAACCAGTATTGAGGCCTGTTCAGGTCATGCAGAATGCCAATCATGTGAC 444
Query 417 TAGTTCCCCTGTGGCCTCACAACCAATATTTATCACTACGCAGGGATTTCCTGTAAGGAATGTCCGGCCTGTAC 490
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 TAGTTCCCCTGTGGCCTCACAACCAATATTTATCACTACGCAGGGATTTCCTGTAAGGAATGTCCGGCCTGTAC 518
Query 491 AAAATGCAATGAATCAGGTTGGGATTGTGCTGAACGTACAGCAAGGCCAAACGGTTAGACCAATTACACTAGTT 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 AAAATGCAATGAATCAGGTTGGGATTGTGCTGAACGTACAGCAAGGCCAAACGGTTAGACCAATTACACTAGTT 592
Query 565 CCAGCCCCAGGTACCCAGTTTGTTAAGCCGACAGTTGGAGTTCCACAAGTGTTCTCCCAGATGACCCCTGTGAG 638
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 593 CCAGCCCCAGGTACCCAGTTTGTTAAGCCGACAGTTGGAGTTCCACAAGTGTTCTCCCAGATGACCCCTGTGAG 666
Query 639 GCCAGGCTCCACAATGCCTGTGAGGCCCACCACCAACACCTTCACCACCGTCATCCCGGCCACTCTTACCATTC 712
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GCCAGGCTCCACAATGCCTGTGAGGCCCACCACCAACACCTTCACCACCGTCATCCCGGCCACTCTTACCATTC 740
Query 713 GAAGCACCGTCCCACAGTCCCAGTCCCAGCAGACCAAGTCCACTCCCAGCACTTCTACCACTCCCACTGCCACA 786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 741 GAAGCACCGTCCCACAGTCCCAGTCCCAGCAGACCAAGTCCACTCCCAGCACTTCTACCACTCCCACTGCCACA 814
Query 787 CAGCCAACCTCACTGGGGCAACTAGCTGTTCAGTCTCCAGGCCAGTCAAACCAGACCACGAATCCCAAGCTAGC 860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 815 CAGCCAACCTCACTGGGGCAACTAGCTGTTCAGTCTCCAGGCCAGTCAAACCAGACCACGAATCCCAAGCTAGC 888
Query 861 TCCCTCCTTCCCCTCTCCACCTGCAGTGAGCATTGCCAGCTTTGTCACTGTGAAGCGACCTGGTGTTACAGGCG 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 889 TCCCTCCTTCCCCTCTCCACCTGCAGTGAGCATTGCCAGCTTTGTCACTGTGAAGCGACCTGGTGTTACAGGCG 962
Query 935 AAAATAGCAATGAAGTGGCCAAATTGGTGAATACCCTTAACACCATCCCTTCCCTGGGCCAGAGTCCTGGGCCA 1008
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 AAAATAGCAATGAAGTGGCCAAATTGGTGAATACCCTTAACACCATCCCTTCCCTGGGCCAGAGTCCTGGGCCA 1036
Query 1009 GTGGTGGTGTCCAACAACAGCTCTGCTCATGGCTCTCAAAGAACCAGCGGACCTGAGTCTTCAATGAAAGGTAC 1082
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 GTGGTGGTGTCCAACAACAGCTCTGCTCATGGCTCTCAAAGAACCAGCGGACCTGAGTCTTCAATGAAAG---- 1106
Query 1083 AATAACC------------------------------------------------------------------- 1089
|.|||
Sbjct 1107 --TGACCTCTTCCATCCCAGTATTTGACCTCCAGGATGGTGGACGGAAAATATGTCCACGATGTAATGCTCAAT 1178
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 1179 TTCGTGTTACTGAAGCTTTGAGAGGTCACATGTGTTACTGTTGCCCAGAAATGGTTGAATACCAGAAGAAAGGA 1252
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 1253 AAGTCCCTGGATTCAGAACCCAGTGTCCCATCAGCAGCAAAGCCCCCATCCCCTGAGAAAACAGCTCCTGTTGC 1326
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 1327 TTCCACACCCTCTTCTACACCTATTCCTGCTCTGTCACCGCCTACCAAAGTACCAGAACCAAATGAGAACGTGG 1400
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 1401 GCGATGCCGTCCAGACCAAACTCATTATGCTTGTAGATGACTTCTACTATGGACGGGATGGTGGCAAAGTAGCC 1474
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 1475 CAGCTCACAAATTTCCCTAAGGTCGCCACATCTTTCCGATGCCCACATTGTACCAAAAGGCTAAAAAACAATAT 1548
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 1549 TCGATTCATGAACCATATGAAACACCACGTAGAACTCGATCAGCAGAACGGTGAGGTAGATGGTCACACTATCT 1622
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 1623 GCCAGCACTGTTACCGCCAGTTTTCCACTCCCTTCCAGCTTCAGTGCCACTTGGAAAATGTTCATAGTCCCTAT 1696
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 1697 GAATCTACTACCAAGTGCAAGATCTGTGAATGGGCGTTTGAAAGTGAGCCACTATTTCTCCAGCATATGAAGGA 1770
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 1771 TACTCATAAGCCTGGAGAGATGCCTTATGTTTGCCAGGTGTGTCAATATCGCTCCTCACTCTACTCTGAGGTAG 1844
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 1845 ATGTCCATTTTCGGATGATCCATGAGGATACCCGGCATCTGCTCTGCCCTTATTGCCTGAAGGTCTTCAAAAAT 1918
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 1919 GGCAATGCATTCCAACAGCATTACATGAGGCACCAGAAGAGAAATGTTTATCACTGCAACAAATGCCGGCTGCA 1992
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 1993 GTTTCTCTTTGCCAAGGACAAAATTGAACACAAGCTTCAACACCATAAAACCTTCCGTAAACCCAAGCAGCTGG 2066
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 2067 AGGGCTTGAAACCAGGCACCAAGGAGTGTCATGGGCCGGCAGACATGCCTGGAGTGCAGCTTCGAGATCCCAGA 2140
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 2141 CTTCCCTAATCATTTCCCTACTTACGTACACTGCTCTCTGTGTCGCTATAGCACCTGCTGTTCTCGAGCTTATG 2214
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 2215 CCAACCACATGATCAACAATCATGTTCCACGGAAGAGCCCCAAGTATTTGGCTTTGTTTAAAAATTCTGTGAGT 2288
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 2289 GGAATCAAGCTGGCCTGCACTTCATGTACCTTTGTTACCTCTGTGGGCGATGCTATGGCCAAGCATTTGGTATT 2362
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 2363 CAACCCCTCTCACAGATCCAGCAGCATCCTGCCACGGGGACTCACTTGGATAGCTCACTCAAGGCATGGCCAGA 2436
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 2437 CTCGTGACCGAGTGCATGACCGGAACGTGAAGAATATGTACCCTCCTCCTTCCTTCCCCACTAACAAAGCTGCC 2510
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 2511 ACTGTGAAATCTGCGGGGGCCACCCCAGCTGAGCCTGAAGAGCTACTAACTCCCTTAGCCCCAGCACTCCCATC 2584
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 2585 ACCAGCCTCAACTGCAACCCCACCACCAACCCCCACTCACCCGCAGGCTTTAGCCCTTCCACCGCTGGCTACAG 2658
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 2659 AGGGAGCCGAATGTCTGAATGTTGATGATCAGGATGAAGGGAGCCCAGTCACCCAAGAACCTGAGCTAGCATCA 2732
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 2733 GGTGGTGGTGGTAGTGGTGGAGTTGGCAAAAAGGAGCAGCTGTCTGTGAAGAAGCTTCGAGTAGTACTGTTTGC 2806
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 2807 TCTATGCTGCAATACAGAACAGGCAGCTGAACACTTCCGAAATCCCCAGCGACGTATTCGCCGTTGGCTTCGAC 2880
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 2881 GTTTCCAGGCCTCCCAGGGGGAGAATCTAGAGGGCAAATATCTGAGCTTTGAGGCAGAAGAGAAACTGGCTGAG 2954
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 2955 TGGGTGCTAACCCAGCGCGAACAACAGCTACCTGTAAATGAGGAGACCTTGTTCCAGAAGGCCACCAAAATAGG 3028
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 3029 ACGTTCTTTGGAAGGGGGGTTTAAGATCTCCTATGAGTGGGCTGTGCGTTTCATGCTGCGGCACCACCTGACTC 3102
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 3103 CCCATGCCCGGCGAGCTGTGGCCCACACCCTACCTAAGGATGTAGCAGAGAATGCAGGACTCTTCATTGATTTT 3176
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 3177 GTACAACGGCAGATTCACAACCAGGACTTACCCTTGTCTATGATTGTGGCTATTGATGAGATCTCTTTGTTCCT 3250
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 3251 GGATACAGAGGTGCTGAGCAGTGATGATCGAAAGGAGAATGCCCTGCAGACAGTGGGCACAGGGGAACCTTGGT 3324
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 3325 GTGATGTAGTCCTAGCCATTCTGGCAGATGGCACTGTCCTTCCCACCCTGGTTTTCTACAGAGGGCAGATGGAT 3398
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 3399 CAGCCTGCTAACATGCCAGACTCCATATTGCTAGAGGCAAAGGAGAGTGGCTACAGTGATGACGAGATCATGGA 3472
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 3473 GCTGTGGTCAACTCGAGTGTGGCAGAAGCACACAGCTTGCCAGCGCAGCAAAGGCATGCTTGTGATGGACTGTC 3546
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 3547 ATCGCACTCACTTGTCAGAAGAGGTACTGGCTATGCTTAGTGCCTCTAGCACTTTGCCTGCAGTGGTCCCAGCA 3620
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 3621 GGCTGTAGCTCCAAAATTCAGCCATTAGATGTATGCATCAAAAGAACTGTCAAGAACTTCCTGCATAAAAAATG 3694
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 3695 GAAGGAACAGGCTCGGGAAATGGCAGATACTGCATGTGATTCTGATGTCCTGCTTCAGCTGGTGCTTGTCTGGC 3768
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 3769 TGGGTGAAGTGCTAGGTGTCATTGGGGACTGTCCAGAGCTAGTTCAGCGCTCCTTCCTGGTGGCTAGTGTTCTG 3842
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 3843 CCTGGCCCCGATGGCAACATTAACTCACCTACAAGAAATGCTGACATGCAGGAGGAGCTAATTGCCTCCCTAGA 3916
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 3917 GGAGCAACTGAAGCTGAGTGGGGAACATTCTGAGTCTTCCACTCCACGACCCAGATCATCTCCTGAAGAGACAA 3990
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 3991 TTGAGCCTGAAAGTCTTCACCAGCTCTTTGAGGGTGAAAGTGAGACCGAGTCTTTCTATGGCTTTGAAGAAGCT 4064
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 4065 GACCTAGATCTGATGGAGATTTGAGTGTTGGGGTCATGAGGGGGTGTGGAGTGAGGGTGGGAACATGTGAGGGA 4138
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 4139 GGGTAAAGGGGCTTAGGGAAAAGGGGGCATACCAGGTGGGGTATTTGGTTTCTATTTTTTAATTTTATACCACC 4212
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 4213 ACTCCCCCCTGAAGTTGACTTACACTTCCCTGTGGATTTGTGGATTAATTAGGAAAACCAATAGTAATCACGTC 4286
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 4287 TGAGCCAAGGAGCTGGCCCATTGGTCATTCACTTCTGCTAAAAACAGGTTTTTGTGACTTTTTTTTTTTTTAAA 4360
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 4361 TTTAAATCACTGTGTTTGGTATTTTTCTGACAAAATTAAGAAAAAGAAAAAAAATTATTTGTGGGCAAATGTTA 4434
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 4435 AATTTTTTTGTTTCCCCTTTTACCTCAATTGTATCATAGTACTGGGTTTTTTTGTTTGTTTTATTGTGTGGCCA 4508
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 4509 ATGTCTTTGGGCATGATGCTATCTAATCATTGTTAATGTGAGAACATTTCTGAAGATGGGAAAGACAAATTATG 4582
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 4583 TAGCTCACAAACTGGTTTATTATATATATGGATAAAAAACTTTTTTCATTGTGGTCTTAACACTTTTATATAAA 4656
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 4657 AATGAAAATGGAAAAAAAGTCCCACTGAACTCTCTCTTCCTTCTCCTTTTCTTTCCTTCCCTCTCCAGAGATGT 4730
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 4731 TGGTTTCTACAGCAACCCTAGATATAAAATTGTGGCTTTAAAAATGCATGAAACCACCTTTAATTATCCAGAAT 4804
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 4805 GAATAGATTTGTCTTTTCCTCACCACCTTCCCTCCAAAACATGACATAAACAATATTTTTTGCACTTGTGATCC 4878
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 4879 TTGGCCCCTTTCCCCATTCTCAACACCATCCATCCCTCTGGACAAAGGATCATACAGGTGTTATTAGCAAGCAA 4952
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 4953 GAGATACTGAAGCGATCAAACAGTTTTAGGGTGGAAGCCATTCCCAGTTTGAGTCTTCATCCTGTAAGCCCCCA 5026
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 5027 GGGGCAGTCCCTGCTTTACTGAACTTCATCCTGTTAGATGGAGAGCATGCCTGTTTAAGGGATTACTGGTCCTA 5100
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 5101 CAGCCAGGAGCTAATTGTTCAAGAAGTGTTGAACTTTAAAAAGACAAGACCACTTGTTGAAATCCAGCGTGCTC 5174
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 5175 TGTGGCTTTCCCCTATTTCTCTTAATACTTAGGGAAGAATCTGACAGGAAGAAGCGCACAGGGGTGTGCACAAA 5248
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 5249 GAAAATGACATGAATCTTTATTTTTCACTGCCAGCTTCAAGGAAAGAAAATTTTTTCTACAATTTGCATGAGGG 5322
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 5323 ATTTTTTTAATTGTATGTACTCATGGTTGTAAACCAAAACGTACTGTACCGTACAGAGAAAAGGAGCAAAAAAC 5396
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 5397 CAAGTCTTCTGTTTATCCTGAGGCTTTCCACAATGTTCCCCTCCTGTGAGCCAAGGAGGCAAACTGCACAAGCT 5470
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 5471 TGTAAATGGTTCGTCTTTAAAATGTACATAAGTGGAACATTTAATAAAATGAGGGGAAATGGATTTATAAACTT 5544
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 5545 GTTTTTTTTCTAGGTGACCCTGTTTAATAGGCTTTCACAGACTGGGGAATGCTCAAGATGTGATGGGCCTGGTG 5618
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 5619 GTACAGGTGTGACATTTGTTACCACCCATTTCTCCCACCCCACCCTGCTTTTTTGTTTGTTTGTTTTTTCATCC 5692
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 5693 CCCAGCACACTATAATATAGTGAACTGGAAAAGTCCCTTCCAGAAACAGCTTGGCCAGCTTTGTGAACCTTTGA 5766
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 5767 CATCTGAAAACAACCAAGGATCCATCTGGGCTTCTCTTCCCCAGCTTTTTGCCTGATGCCATTTTATTGACAGA 5840
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 5841 CAATGGACTTTGAAGTCAGCCTTTGCCTTTGAGAAAGTTCAAGAACTATGGTTGGTCACGTCTATCTACAACCT 5914
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 5915 AATCCTACTCTTTGGTAGTCTCTGCAGCAGCCACAGCCTTAGCAGAGCTGGGGTTCCTGTCTTCTGCACACGAT 5988
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 5989 TGACTTTCTTGATGGGTAATTTTTTTTAAGATTATACCAACAGTGGATCAGCTGGGTTTTGGCCAGGAAGTTGT 6062
Query 1090 -------------------------------------------------------------------------- 1089
Sbjct 6063 CTTTGTGGACTCTGCCTGCATGGCTTAGTAGTAGAAGGAAATTTTTTTTTGGTTTTGTTTTTTATAATTCAGTT 6136
Query 1090 ------------------------------ 1089
Sbjct 6137 TAATCAATAAACATGTATTTATTGACTGTT 6166
