Nucleotide Global Alignment
Description
- Query:
- TRCN0000467879
- Subject:
- XR_001737540.2
- Aligned Length:
- 3235
- Identities:
- 1936
- Gaps:
- 1228
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 ATGTTGGCCAGGCTGCTCTGGAACTCCTGGCCTCAAGTGATCTGCCACCTCAGCCGCCCAAATGGCTGGGATTA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 CAGGTGTGAGCCACCATGCCAGGCCAGCATTTGGGAAAATTTTATTTCCTGCTTTATGTTTTAGCGTTCTTTGA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 TTTGACCAGGAGTATTCTAGGTAAGGGTATTGAAATTGCCATTTACTGTGGCAAGCAAAGTGTGTTATGTACAT 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 TATTTGCCTAATTACCTATGTCGTTGAGTCATTGAGAAAATTAAATGAAATGATCAGAACTCATCTTAATGACA 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GAGGAGACTCTCCAAACATAATGCAAAGAAGATATAATCCACTGATAAATAATTTTAAGTTGACTTTATTTTTT 370
Query 1 -----------------------------ATGGCACTGTCAAA------------------------------- 14
.|||||.|||.|||
Sbjct 371 TTTAACAGGAAGTATTTGTGTTTTTTCAATTGGCATTGTTAAATAATACCACATAAGTGTTTCTTTTACCATTT 444
Query 15 -------GAGGGAGCT---------------------------GGATGAGCTGAAACCATG-GATA-------- 45
|||||.|.| ||..||..||.|...||| ||||
Sbjct 445 AATATTTGAGGGGGGTAATAGAACATATACAGAAATATGGGTGGGTGGATTTGCATATATGTGATATTTACAGA 518
Query 46 --GAGAAGACA----------------------GTGAAGAGGGTC-CTGGGTTTCTCA-----GAGC------- 82
|| ||||.| ||| |||.|.|| ||..||..|||| ||||
Sbjct 519 AGGA-AAGAAATGGATTTTTTTTGTGTGTGTGTGTG-AGATGTTCTCTCTGTCACTCAGGCTGGAGCGCAGTGG 590
Query 83 ------CTACGGTGGTCACAGCAGC-------------ATTGAACTG-------TG------------------ 112
|| |||| ||||.||||| .||.||.|| ||
Sbjct 591 TGCGATCT-CGGT--TCACTGCAGCCTCTGCCTCCCAGGTTCAAGTGATTCTCCTGCCTCAGCCTCCTAAGTAG 661
Query 113 -TGGG--GAAGGGCATG-GACA---------------------------AGAAGAAGGCAG-------CC---- 144
|||| .|..|||||| |.|| ||.|| ||.||| ||
Sbjct 662 CTGGGATTATAGGCATGTGCCACCACGCACGGCTAATTTTTGTATTTTTAGTAG-AGACAGGGTTTCACCATGT 734
Query 145 -GATCA------TCTGAAACCTTTTCTTGA-------TGAT---TCTAC-----TCTCCGA------------- 183
||.|| ||||.||| ||.||| |||| .|||| .||||.|
Sbjct 735 TGACCAGGCTGGTCTGGAAC----TCCTGACCTCAAGTGATCTGCCTACCTTGGCCTCCCAAATTGCTGGGATT 804
Query 184 ------------------------------TTTGT------GGACAA------ACTGTTT----GAGGCT---- 207
||||| || ||| |||.||| .|||||
Sbjct 805 ATAGGCGTGAGCCACCGTACCTAGCCTGTTTTTGTTTTTCAGG-CAAGGTCTCACTTTTTTGTCCAGGCTGGAG 877
Query 208 ----GTGGAGGAAG----------------------GCC--------------GAAGCT-----CTAGGCATTC 236
||||.| || ||| ||..|| ||.|||.|.|
Sbjct 878 TTCAGTGGCG--AGATCTTGGCTTACTGCAACCTCTGCCTCCCGGGCTTGAGTGATCCTCCCACCTTGGCTTCC 949
Query 237 CAAGTCTAGCAGTG---ACAGG--AGCAGAAAACGAGAGC-----------------------TAAAG---GAG 279
|||| ||||.|.| ||||| |.|| .|| ||||| |||
Sbjct 950 CAAG--TAGCTGGGACTACAGGTCACCA---------TGCCTGGCTGATTTTTGTATTTTTTTTAAAGATTGAG 1012
Query 280 -------GTGTT--------TGGTGATG-ACT------CTGA---GATCTCT----------------AAA--- 309
.|||| ||||..|| ||| |||| |||| || |||
Sbjct 1013 TTCCACCATGTTGCCCAGGCTGGTCTTGAACTCCTGGGCTGAAATGATC-CTCCTGCCTCAGCCTCCCAAAGTG 1085
Query 310 ---GAATCATCAGGAGTAAAGAAGCGACGAATACCCCG-------------------TTTTGAGGAGGTGGAAG 361
||.|.| ||||.|| .||| ||||.|| ||||| ||.|||||..|
Sbjct 1086 CTGGACTTA-CAGGCGT----GAGC------TACCACGCCCAGCCAATTATTTTCTTTTTTG-GGGGGTGGGGG 1147
Query 362 A---------------------AGAGCCAGAG---------GTGATC--------------CCTGGGCCTCC-- 389
| || ||..||| |.|.|| |||..||||||
Sbjct 1148 ATGGAGTCTTGCTCTGTCACTTAG-GCTGGAGTACGGTGGCGCGTTCTCGGCTCACTGCAACCTCTGCCTCCCG 1220
Query 390 --ATCAGAGAGC------CCTG-----GCATGCTGACTAAG------CTCCAGATCAAACAGATGATGGAGGCA 444
.||| .|| |||| ||.|.||||.| || ||.||||||||||||||||||||||||
Sbjct 1221 GGTTCA---CGCCATTCTCCTGCCTCAGCCTCCTGAGT-AGCTGGGACTACAGATCAAACAGATGATGGAGGCA 1290
Query 445 GCAACACGACAAATCGAGGAGAGGAAAAAACAGCTGAGCTTCATTAGCCCCCCTACACCTCAGCCAAAGACTCC 518
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1291 GCAACACGACAAATCGAGGAGAGGAAAAAACAGCTGAGCTTCATTAGCCCCCCTACACCTCAGCCAAAGACTCC 1364
Query 519 TTCTTCCTCCCAACCAGAACGACTTCCTATTGGCAACACTATTCAGCCCTCCCAGGCTGCCACTTTCATGAATG 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1365 TTCTTCCTCCCAACCAGAACGACTTCCTATTGGCAACACTATTCAGCCCTCCCAGGCTGCCACTTTCATGAATG 1438
Query 593 ATGCCATTGAGAAGGCAAGGAAAGCAGCTGAACTGCAAGCTCGAATCCAAGCCCAGCTGGCACTGAAGCCAGGA 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1439 ATGCCATTGAGAAGGCAAGGAAAGCAGCTGAACTGCAAGCTCGAATCCAAGCCCAGCTGGCACTGAAGCCAGGA 1512
Query 667 CTCATCGGCAATGCCAACATGGTGGGCCTGGCTAATCTCCATGCCATGGGCATTGCTCCCCCGAAGGTGGAGTT 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1513 CTCATCGGCAATGCCAACATGGTGGGCCTGGCTAATCTCCATGCCATGGGCATTGCTCCCCCGAAGGTGGAGTT 1586
Query 741 AAAAGACCAAACGAAACCTACACCACTGATCCTGGATGAGCAAGGGCGCACTGTAGATGCAACAGGCAAGGAGA 814
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1587 AAAAGACCAAACGAAACCTACACCACTGATCCTGGATGAGCAAGGGCGCACTGTAGATGCAACAGGCAAGGAGA 1660
Query 815 TTGAGCTGACACACCGCATGCCTACTCTGAAAGCCAATATTCGTGCTGTGAAGAGGGAACAATTCAAGCAACAA 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1661 TTGAGCTGACACACCGCATGCCTACTCTGAAAGCCAATATTCGTGCTGTGAAGAGGGAACAATTCAAGCAACAA 1734
Query 889 CTAAAGGAAAAGCCATCAGAAGACATGGAATCCAATACCTTTTTTGACCCCCGAGTCTCCATTGCCCCTTCCCA 962
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 CTAAAGGAAAAGCCATCAGAAGACATGGAATCCAATACCTTTTTTGACCCCCGAGTCTCCATTGCCCCTTCCCA 1808
Query 963 GCGCCAGAGACGCACTTTTAAATTCCATGACAAGGGCAAATTTGAGAAGATTGCTCAGCGATTACGGACAAAGG 1036
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1809 GCGCCAGAGACGCACTTTTAAATTCCATGACAAGGGCAAATTTGAGAAGATTGCTCAGCGATTACGGACAAAGG 1882
Query 1037 CTCAACTGGAGAAGCTACAGGCAGAGATTTCACAAGCAGCTCGAAAAACAGGCATCCATACTTCGACTAGGCTT 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1883 CTCAACTGGAGAAGCTACAGGCAGAGATTTCACAAGCAGCTCGAAAAACAGGCATCCATACTTCGACTAGGCTT 1956
Query 1111 GCCCTCATTGCTCCTAAGAAGGAGCTAAAGGAAGGAGATATTCCTGAAATTGAGTGGTGGGACTCTTACATAAT 1184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1957 GCCCTCATTGCTCCTAAGAAGGAGCTAAAGGAAGGAGATATTCCTGAAATTGAGTGGTGGGACTCTTACATAAT 2030
Query 1185 CCCCAATGGCTTTGATCTTACAGAGGAAAATCCCAAGAGAGAAGATTATTTTGGAATCACAAATCTTGTTGAAC 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2031 CCCCAATGGCTTTGATCTTACAGAGGAAAATCCCAAGAGAGAAGATTATTTTGGAATCACAAATCTTGTTGAAC 2104
Query 1259 ATCCAGCCCAGCTCAATCCTCCAGTTGACAATGACACACCAGTTACTCTGGGAGTATATCTTACCAAGAAGGAA 1332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2105 ATCCAGCCCAGCTCAATCCTCCAGTTGACAATGACACACCAGTTACTCTGGGAGTATATCTTACCAAGAAGGAA 2178
Query 1333 CAGAAAAAACTTCGGAGACAAACAAGGAGGGAAGCACAGAAGGAACTACAAGAAAAAGTCAGGCTGGGCCTGAT 1406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2179 CAGAAAAAACTTCGGAGACAAACAAGGAGGGAAGCACAGAAGGAACTACAAGAAAAAGTCAGGCTGGGCCTGAT 2252
Query 1407 GCCTCCTCCAGAACCCAAAGTGAGAATTTCTAATTTGATGCGAGTATTAGGAACAGAAGCTGTTCAAGACCCCA 1480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2253 GCCTCCTCCAGAACCCAAAGTGAGAATTTCTAATTTGATGCGAGTATTAGGAACAGAAGCTGTTCAAGACCCCA 2326
Query 1481 CGAAGGTAGAAGCCCACGTCAGAGCTCAGATGGCAAAAAGACAGAA---------------------------- 1526
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2327 CGAAGGTAGAAGCCCACGTCAGAGCTCAGATGGCAAAAAGACAGAACCCTGCCTCTGATCTTCAATGCCTTTCT 2400
Query 1527 ------------------------------AGCGCATGAAGAGGCCAACGCTGCCCGAAAACTCACAGCAGAAC 1570
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2401 CACTTGTGGATGTCCTTCCTGTCACGACAGAGCGCATGAAGAGGCCAACGCTGCCCGAAAACTCACAGCAGAAC 2474
Query 1571 AGAGAAAGGTCAAGAAAATTAAAAAGCTTAAAGAAGACATTTCACAGGGGGTACACATATCTGTATATAGAGTT 1644
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2475 AGAGAAAGGTCAAGAAAATTAAAAAGCTTAAAGAAGACATTTCACAGGGGGTACACATATCTGTATATAGAGTT 2548
Query 1645 CGAAATTTGAGCAACCCAGCCAAGAAGTTCAAGATTGAAGCCAATGCTGGGCAACTGTACCTGACAGGGGTGGT 1718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2549 CGAAATTTGAGCAACCCAGCCAAGAAGTTCAAGATTGAAGCCAATGCTGGGCAACTGTACCTGACAGGGGTGGT 2622
Query 1719 GGTACTGCACAAGGATGTCAACGTGGTAGTAGTGGAAGGGGGCCCCAAGGCCCAGAAGAAATTTAAGCGTCTTA 1792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2623 GGTACTGCACAAGGATGTCAACGTGGTAGTAGTGGAAGGGGGCCCCAAGGCCCAGAAGAAATTTAAGCGTCTTA 2696
Query 1793 TGCTGCATCGGATAAAGTGGGATGAACAGACATCTAACACAAAGGGAGATGATGATGAGGAGTCTGATGAGGAA 1866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2697 TGCTGCATCGGATAAAGTGGGATGAACAGACATCTAACACAAAGGGAGATGATGATGAGGAGTCTGATGAGGAA 2770
Query 1867 GCTGTGAAGAAAACCAACAAATGTGTACTAGTCTGGGAGGGTACAGCCAAAGACCGGAGCTTTGGAGAGATGAA 1940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2771 GCTGTGAAGAAAACCAACAAATGTGTACTAGTCTGGGAGGGTACAGCCAAAGACCGGAGCTTTGGAGAGATGAA 2844
Query 1941 GTTTAAACAGTGTCCTACAGAGAACATGGCTCGTGAGCATTTCAAAAAGCATGGGGCTGAACACTACTGGGACC 2014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2845 GTTTAAACAGTGTCCTACAGAGAACATGGCTCGTGAGCATTTCAAAAAGCATGGGGCTGAACACTACTGGGACC 2918
Query 2015 TTGCGCTGAGTGAATCTGTGTTAGAGTCCACTGAT--------------------------------------- 2049
|||||||||||||||||||||||||||||||||||
Sbjct 2919 TTGCGCTGAGTGAATCTGTGTTAGAGTCCACTGATTGAGACTACTGCAAGCCCTTGCCTCTCCTCCCTTGCCTT 2992
Query 2050 -------------------------------------------------------------------------- 2049
Sbjct 2993 TGTCTCTTCAGTCCTCTCACTTATTCTATTTCCCAACCCCCTCCCACTTGTTTGTGTGATCTCAGAACTGTGCC 3066
Query 2050 -------------------------------------------------------------------------- 2049
Sbjct 3067 AAGCAGACACTGGGACAAAGGGAGAATATCTTGCTCCCCTCCTGAGTCAGCCTGGTGTTGCCCTTTATTCCCCT 3140
Query 2050 ----------------------------------------------------- 2049
Sbjct 3141 TATGTGCATATGATTAAAGAGTTATTTTTAAACTTGGTGTGATATTTTTCACA 3193
