Nucleotide Global Alignment
Description
- Query:
- TRCN0000467894
- Subject:
- XR_385170.2
- Aligned Length:
- 5355
- Identities:
- 926
- Gaps:
- 4377
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 CCGCCGCCAAGTGAGTGAGGAGGAGGAGAGCCGCGGAGGAAGAGGAGGAGCGCAGTCGGAGCGCGGCGGCGGCG 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GCGGCGGCGGTAACGCGGAGCGCCGCGGCGGACAGCACCGCAGACTCGCGAGCTCCGGCGCAGGCGGCGCGACC 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGCCGACGAGCGGCCCCCCGGCTCCTCGCGGCGCAGCGGCCCCGCGCCGCGCTCGGCCCGAGACCCGCCTCTGC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 CGCCGGCCTCGCGAGGGGAGCCGCGCCGGGCGGCCGAGGAGCGGCGGCCGCGGCGCGTCGGGCCGGGCGAAAGT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 GCCTGCGGGGGGCGGGCGGGCGCGCGGAGCCGGCCGCCCCGGGGCTCGGCGCGGGAGCCGGAGCGGGAGCCGGC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 GCGGAGCGGGACGCCGCGTCCCGAGCGGCCGGCGGCCGGAGCTCGCCCCCGCCCCTCCCTCCTCTCCTCCGGCG 444
Query 1 ---------------------------------------ATGGTCGGGGAAATGGAAACGAAGGAGAAGCCGAA 35
|||||||||||||||||||||||||||||||||||
Sbjct 445 GCGGCGGCGGCGGGCGGAGTGAGCTGCGGAGCCTGGAATATGGTCGGGGAAATGGAAACGAAGGAGAAGCCGAA 518
Query 36 GCCCACCCCAGATTACCTGATGCAGCTGATGAACGACAAGAAGCTCATGAGCAGCCTGCCCAACTTCTGCGGGA 109
|||||||||||||||..|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 GCCCACCCCAGATTATTTGATGCAGCTGATGAACGACAAGAAGCTCATGAGCAGCCTGCCCAACTTCTGCGGGA 592
Query 110 TCTTCAACCACCTCGAGCGGCTGCTGGACGAAGAAATTAGCAGAGTACGGAAAGACATGTACAATGACACATTA 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||.|||
Sbjct 593 TCTTCAACCACCTCGAGCGGCTGCTGGACGAAGAAATTAGCAGAGTACGGAAAGACATGTACAATGACACGTTA 666
Query 184 AATGGCAGTACAGAGAAAAGGAGTGCAGAATTGCCTGATGCTGTGGGACCTATTGTTCAGTTACAAGAGAAACT 257
||||||||||||||||||||.|||||||||||||||||.||.||||||||.|||||||||||||||||||||||
Sbjct 667 AATGGCAGTACAGAGAAAAGAAGTGCAGAATTGCCTGACGCGGTGGGACCCATTGTTCAGTTACAAGAGAAACT 740
Query 258 TTATGTGCCTGTAAAAGAATACCCAGATTTTAATTTTGTTGGGAGAATCCTTGGACCTAGAGGACTTACAGCCA 331
||||||||||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||.|
Sbjct 741 TTATGTGCCTGTAAAAGAATACCCTGATTTTAATTTTGTTGGGAGAATCCTTGGACCTAGAGGACTTACAGCTA 814
Query 332 AACAACTTGAAGCAGAAACCGGATGTAAAATCATGGTCCGAGGCAAAGGCTCAATGAGGGATAAAAAAAAGGAG 405
|||||||||||||||||||.|||||||||||.|||||||||||||||||||||||||||||||||||.||||||
Sbjct 815 AACAACTTGAAGCAGAAACGGGATGTAAAATAATGGTCCGAGGCAAAGGCTCAATGAGGGATAAAAAGAAGGAG 888
Query 406 GAGCAAAATAGAGGCAAGCCCAATTGGGAGCATCTAAATGAAGATTTACATGTACTAATCACTGTGGAAGATGC 479
||||||||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||||||||
Sbjct 889 GAGCAAAATAGAGGCAAGCCCAATTGGGAGCATCTAAATGAAGACTTACATGTACTAATCACTGTGGAAGATGC 962
Query 480 TCAGAACAGAGCAGAAATCAAATTGAAGAGAGCAGTTGAAGAAGTGAAGAAATTATTGGTACCTGCAGCAGAAG 553
|||||||||||||||||||||..||||||||||.|||||||||||||||||.|||.||||||||||.||.||||
Sbjct 963 TCAGAACAGAGCAGAAATCAAGCTGAAGAGAGCGGTTGAAGAAGTGAAGAAGTTACTGGTACCTGCGGCTGAAG 1036
Query 554 GAGAAGACAGCCTGAAGAAGATGCAGCTGATGGAGCTTGCGATTCTGAATGGCACCTACAGAGATGCCAACATT 627
|.||||||||||||||||||||||||||||||||||||||.|||||||||||||||||||||||.|||||||||
Sbjct 1037 GTGAAGACAGCCTGAAGAAGATGCAGCTGATGGAGCTTGCAATTCTGAATGGCACCTACAGAGACGCCAACATT 1110
Query 628 AAATCACCAGCCCTTGCCTTTTCTCTTGCAGCAACAGCCCAGGCTGCTCCAAGGATCATTACTGGGCCTGCGCC 701
||||||| ||||.|||||||||||||||||||||||.||||||||||||||
Sbjct 1111 AAATCAC------------------------CAACTGCCCAGGCTGCTCCAAGGATCATCACTGGGCCTGCGCC 1160
Query 702 GGTTCTCCCACCAGCTGCCCTGCGTACTCCTACGCCAGCTGGCCCTACCATAATGCCTTTGATCAGACAAATAC 775
.||.||||||||||||||.||||||||.||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1161 TGTCCTCCCACCAGCTGCTCTGCGTACACCTACGCCAGCTGGCCCTACCATAATGCCTTTGATCAGACAAATAC 1234
Query 776 AGACCGCTGTCATGCCAAACGGAACTCCTCACCCAACTGCTGCAATAGTTCCTCCAGGGCCCGAAGCTGGTTTA 849
|||||||||||||||||||||||||||||||||||||||||||||||||.|||||||||||.||||||||.|||
Sbjct 1235 AGACCGCTGTCATGCCAAACGGAACTCCTCACCCAACTGCTGCAATAGTCCCTCCAGGGCCTGAAGCTGGGTTA 1308
Query 850 ATCTATACACCCTATGAGTACCCCTACACATTGGCACCAGCTACATCAATCCTTGAGTATCCTATTGAACCTAG 923
|||||.|||||||||||.|||||||||||||||||||||||||||||||||||||||||.|||||||||||.||
Sbjct 1309 ATCTACACACCCTATGAATACCCCTACACATTGGCACCAGCTACATCAATCCTTGAGTACCCTATTGAACCCAG 1382
Query 924 TGGTGTATTAGGTGCGGTGGCT------ACTAAAG--------TTCGAAGGCACGATATGCGTGTC-------- 975
||||||.|||||| .||||| ||.|||| ||| |.|.||| |||
Sbjct 1383 TGGTGTGTTAGGT---ATGGCTTTCCCAACGAAAGGCTAAGAATTC--AAGAACG--------GTCTTAACCGA 1443
Query 976 -----CATC---------CTTACCAAAGGATTGTGACCGCAGACCGAGCCGCCACCGGCAAC------------ 1023
|||| .|||.||||.|.|| ||.|..|||.|||.||||.||.
Sbjct 1444 ACCCTCATCAGATCTGAATTTAACAAATGCTT--------AGTCTCAGCAGCCTCCGGGAAAAACCTTAGCCTA 1509
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 1510 GCAGTCAGTGACTTACTTGCACTTTTTGCACATAGATATAAAGTAAAATGATACTATTAATTTGGATTAGTCTG 1583
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 1584 TAATACTGCAAAGCAACAGTAATTTATAAAGGAGTGTATAGAAGTAAACTGACTGCTAAGTGTACTGTACTGTT 1657
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 1658 TGCTTTACTAATCACCTAATTCATTGCAGTTCATACTTATTGACTCAAAAGTTTAAATCCACAATCTGTAGGCT 1731
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 1732 TTAATTAAGAGTTGCTTTTTAAACCTTTTTTAAGTGATAAACTCTGAAAGTTAAGGTTAGCAAAATAATTGTCA 1805
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 1806 GTATTAAATGTGGCATTATTTAAGTAGTCCTGCTGCAAGAAAGGCACTTCAGTGAATATGTGACTAGTAAAGCT 1879
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 1880 CAGACACGTCTGGTTCTAATAGAGCTCGTGAGATACTGTGACTTGGGGACTGTCAATGAAGAGGTGAAGTAGGT 1953
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 1954 AGAAGGCCAACCTGTTTGAAATGAATGCAATATTGATAGATACATGACATACTACAGTTGATTTTAAAACTACT 2027
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2028 GTGCCTTAACATGTTTCTTAAGCTTTTGTAGTAAGTGAACCTTTGAGATCCATTTTGATAAACCTGCTGTCAAT 2101
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2102 GTTTCCCTTATGTATGTTTTCTAACTTTGTCTTGGTAATTGCAATTTAACTAGGTGCGGTGGCTACTAAAGTTC 2175
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2176 GAAGGCACGATATGCGTGTCCATCCTTACCAAAGGATTGTGACCGCAGACCGAGCCGCCACCGGCAACTAACCT 2249
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2250 ATGACCTTCTGACCTCTGAACTCTTCACCCAATGATGACCTGACCATGCCTGCCTGCTGATCAGTTAACTGGTA 2323
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2324 ATCGCCTTTGCTTGCCTGTCGTCAGTGCAGCGAGCTGAGGCACTTGTCCGTTCGTCTTACCATCTAACCAAACA 2397
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2398 AAAGACAAAGAAATTGTCCTCCAACTCAGCTTTTCCCCCCCTGTTTGGGTGAAAGTGGTTCTAGAACCTGCACT 2471
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2472 GAATAGTAGTAAAGCAATAAGGCCCGATTCATCCCACAGCACTGATCATCTCTCAATGCCCCACCCCAAGCGAA 2545
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2546 CGGTAAGAAGGCCTCTCTTAAGAAGGGGAGACAGATGGCCCTAACTACTCAGTGACAGAGGCAGTTACTGTGAG 2619
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2620 AGACTTGTAGGAATTTTTTTCTTCTCCTAGCGAAGTCAAAGCTCTCTCTGAATGTACTGTGTGACAATGCATCA 2693
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2694 TGCATGAACCTTCGGTCAGGGATGTCGTTGGGGAAGTGACTTCAAAAGTATTCAAAATTTGACATGCTGTTTGT 2767
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2768 TTAGTCACTACAGTGCCCTCAAAGGGCAGACATTGCAGCCTTTTTATATTGCCTGCCAAAATTTGAAGTATTAG 2841
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2842 AACAAAGTGTGCCATGAGAGAAAAACTTAACAAGGAGTTTTGAAAAGAAATGCAAAGAACAAAACTACAACACT 2915
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2916 ATTTTTTAAAAAGTTGAGTATCTGAGTTAAAATTTCCAAATCTTTATTTTACACCACCTTAAAAATTATATGAG 2989
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 2990 AACAAGGTACATGCATTATGTGTCACATTACTGGGCAAACTGTTCAAATATTTTTTTTAAACCTCCCTGTATAG 3063
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3064 AAAATATCATTAAGGATGTAAAAGCCATGCTTGCCTATTTGCTGTATACATGTAATGAAATTGTAGATAAAGTG 3137
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3138 TAGTGCATTGAAACAAATGAACAAAAAAGTAGATACTTTTACTATACAAGGGTGCTGGTGCAGAAAAAAATATA 3211
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3212 TATATTTTTGGAAATGTAGCATTTTATACTTTCAAGTGTTATAAAAAAAAAGAAAAAGAACAAAGAAACCCTTT 3285
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3286 ATTTCATTAAATGATTTTTTCTGGTGGTTGTCAAGAAACAAAAGACCAAAAGAGCCTTTTTGTCTTTCTTTTTT 3359
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3360 ATTTTTTAAGTATTGGAATAAGTCTAATGAAAAAGAAAGTGCCTTATTTTTCTTCATGGTCATTTAGTCAAGTG 3433
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3434 TCCTGTAAGATCAGCTCCTCCCTCAGAATAAAGTTACTGCATGTTCCTCAGTCGCCCAGTATGTGAAAGGAGAT 3507
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3508 ATGAGAGGAGACAAATGAGTTGATGGTCTAAATTATAAGATTTGTGTCACATTATCTTGATGCCAGTTTGCCAA 3581
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3582 ATCTGATACTGTGAAAAAATTTGATAGCTTTTCTAATGTCTGACTAGTAAATTTTAAAATGTCATTCTTTTACA 3655
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3656 AATCATAATTAGTACTTTTGGTTATTACCGTCTTCAGTGTTAGCCCAAAGATTCTGAGGTTTAGAAAAAAATTA 3729
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3730 TGTAAGATCTGAACATCAGTTTGCAGACAAAATTAAATTAGAGCTTTATTTTATTTGGAGAAGAGGGATACAAT 3803
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3804 GGAATTTTTCCTTACCAATTAGAAATAATTGTAATGCCTAAAAAACTTTTTCACAAAAATGAATCTTTGAAATT 3877
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3878 TTTTATTGTTGAAAAAGTGTTAAGTAACATAAATCTAATCAGATATCTTATGTAGTCCATCTCTGCTGGCTTTA 3951
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 3952 GTAACTGCTCCTAAACTTTTTAACTCTAAAGGAGCGTGGAAAGCCCGCATCACAGTGTTCAGTGACTGCTCTGC 4025
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4026 TCCATTCTTTCTCCTCTCCAGTTTCTCTCTTGAAAGTCAAACAGTTTTGTAGTTGAAGCAGTCCGTGTGCAAAG 4099
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4100 CCTGCATCTAAACACTTGCGTTAATAAGTCATTAACCGCTCAGTACCAGATGTGGCAAATCTCAAGTGATTGTG 4173
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4174 GACTCCTGGCTCATCAACTCATGCCCTCTTCCATACCCTCATGGCTTCACAGTCAAGGTCAGCAGGAAGCTCAT 4247
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4248 TGGTCACCTTCATGGTGACCTCTCCATTATTCTGTCTCACTTGGAACCATTTTCAGTTTATTTACTATGCAATA 4321
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4322 GACAGTCCTTGTTTTGTACTCAGCTAGCTTTGATTTAATGTACCACTGCTTTGTCTTTCTGTTACACATATGGT 4395
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4396 TTTGATTTATTTACAATATATGCTGTGCCATTTTGATTTTTATTTTGGTTGGTTGGTTGAATAAATATGCGACA 4469
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4470 CTCAGAACACTTGAGGTGATAGTTTTAAAAAAAACAAACAAACAGTACCAGTATTTGATCCAGTCTCATCTCAG 4543
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4544 CTGTGTTATACCTGGACAATTTAGATGTTTATCAAAGGTCTTTTATGGGGAAGAAAGCAAATGTGTAAAACAGT 4617
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4618 AGACGTGTGACGTTTATGAGTAATGCTGGCTCTGAACAAACTTTTGAAAACTTAGTTGACAGTGTTTTGAGTCA 4691
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4692 ACTGAAAAAAAGCATGACTTTTGGAATCTCTGAATGCCTTGGTTCTCAGTATTATCACTCTATTGAATTTTTTT 4765
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4766 TTCTTATTAAAGTATGTAGTTTAAAAGTAAGACTTTTTTCCTGACAGTATTATGTAATTTTTAGCGTGGGTAGA 4839
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4840 TGGGAGTGTCGCTTGTATGTTACCATACAGCTGACATGTATTTTTTGTCTATTCTTTATTATCTTAGTAGTTTC 4913
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4914 ATGCTGTGTATGTACCATAACCAACCTATTGCCTATGAGAAACATGTAAGATAATGTATTTACAGCCATTGTTA 4987
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 4988 CAAGTTTATAATGTATTTTTCTATCTTGTTTTATATGTATGTTATATAACATTCAAAAGAATTTTTTTCTTGAT 5061
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 5062 TGAGAAAAGGATACAAAATGCAAAATCCACAATTTTGATAACTGAAAATTGCCAATTGTTTTGCAGTACTTTAT 5135
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 5136 TATATTGGGTGTCTTGTCTTTCTTGGGCTTTTAGTTAGCTGATGAATGAATACATTAGACACTTCTGGGTTTTA 5209
Query 1024 -------------------------------------------------------------------------- 1023
Sbjct 5210 GTTGGGATTTTACATAGCTTGCATTTTAGTTCTTTGGTTCTTTGCTGTTTCTATTAACCCATAGCATTATTTTA 5283
Query 1024 --------------------------- 1023
Sbjct 5284 ATAAATGTTATAATACCAACCTACTAA 5310
