Nucleotide Global Alignment

Description

Query:
TRCN0000468031
Subject:
XM_006500836.3
Aligned Length:
1581
Identities:
795
Gaps:
601

Alignment

Query    1  ATGGCCACCACGGTGACCTGCACCCGCTTCACCGACGAGTACCAGCTCTACGAGGATATTGGCAAGGGGGCTTT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CTCTGTGGTCCGACGCTGTGTCAAGCTCTGCACCGGCCATGAGTATGCAGCCAAGATCATCAACACCAAGAAGC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  TGTCAGCCAGAGATCACCAGAAGCTGGAGAGAGAGGCTCGGATCTGCCGCCTTCTGAAGCATTCCAACATCGTG  222
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  223  CGTCTCCACGACAGCATCTCCGAGGAGGGCTTCCACTACCTGGTCTTCGATCTGGTCACTGGTGGGGAGCTCTT  296
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  297  TGAAGACATTGTGGCGAGAGAGTACTACAGCGAGGCTGATGCCAGTCACTGTATCCAGCAGATCCTGGAGGCCG  370
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  371  TTCTCCATTGTCACCAAATGGGGGTCGTCCACAGAGACCTCAAGCCGGAGAACCTGCTTCTGGCCAGCAAGTGC  444
                             |||||.||.|||||..|.|||||.|||||.|||||..|||||.|.||.|||||||.|
Sbjct    1  -----------------ATGGGCGTAGTCCATCGGGACCTAAAGCCTGAGAATTTGCTTTTAGCTAGCAAGTCC  57

Query  445  AAAGGGGCTGCAGTGAAGCTGGCAGACTTCGGCCTAGCTATCGAGGTGCAGGGGGACCAGCAGGCATGGTTTGG  518
            |||||.||.||.|||||||||||||||||||||.||||.||.||.||.||.||.||||||||||||||||||||
Sbjct   58  AAAGGAGCAGCTGTGAAGCTGGCAGACTTCGGCTTAGCCATAGAAGTTCAAGGCGACCAGCAGGCATGGTTTGG  131

Query  519  TTTCGCTGGCACACCAGGCTACCTGTCCCCTGAGGTCCTTCGCAAAGAGGCGTATGGCAAGCCTGTGGACATCT  592
            |||.|||||||||||.||.||.||.||.||.||.|||||.||.|||||..|.|||||.||.||.|||||.||.|
Sbjct  132  TTTTGCTGGCACACCTGGGTATCTTTCTCCAGAAGTCCTGCGTAAAGATCCTTATGGAAAACCAGTGGATATGT  205

Query  593  GGGCATGTGGGGTGATCCTGTACATCCTGCTCGTGGGCTACCCACCCTTCTGGGACGAGGACCAGCACAAGCTG  666
            |||||||.||.||.|||||.||||||.||||.|||||.|||||||||||||||||.||.||.|||||.|..|||
Sbjct  206  GGGCATGCGGTGTCATCCTCTACATCTTGCTGGTGGGATACCCACCCTTCTGGGATGAAGATCAGCATAGACTG  279

Query  667  TACCAGCAGATCAAGGCTGGTGCCTATGACTTCCCGTCCCCTGAGTGGGACACCGTCACTCCTGAAGCCAAAAA  740
            ||.||||||||||||||.||.||.||.||.||.|||||.||.||.|||||.||.||.||.||||||||||||.|
Sbjct  280  TATCAGCAGATCAAGGCCGGAGCTTACGATTTTCCGTCACCAGAATGGGATACAGTGACACCTGAAGCCAAAGA  353

Query  741  CCTCATCAACCAGATGCTGACCATCAACCCTGCCAAGCGCATCACAGCCCATGAGGCCCTGAAGCACCCGTGGG  814
            ||||||||||.|.|||||||||||||||||||||||.||.|||||||||..||||||||||||.|||||.|||.
Sbjct  354  CCTCATCAACAAAATGCTGACCATCAACCCTGCCAAACGTATCACAGCCTCTGAGGCCCTGAAACACCCATGGA  427

Query  815  TCTGCCAACGCTCCACGGTAGCATCCATGATGCACAGACAGGAGACTGTGGAGTGTCTGAAAAAGTTCAATGCC  888
            ||||.||||||||.||.||.||.||||||||||||||.|||||||||||.||.||..||||.||.||.|||||.
Sbjct  428  TCTGTCAACGCTCTACTGTTGCCTCCATGATGCACAGGCAGGAGACTGTAGACTGCTTGAAGAAATTTAATGCT  501

Query  889  AGGAGAAAGCTCAAGGGAGCCATCCTCACCACCATGCTGGCCACACGGAATTTCTCAGCAGCCAAGAGTTTACT  962
            ||..|.||.||.|||||.||||||.|.||.||.||||||||.||..|.|||||.||||||||||||||||||.|
Sbjct  502  AGACGGAAACTGAAGGGCGCCATCTTGACAACTATGCTGGCTACGAGAAATTTTTCAGCAGCCAAGAGTTTATT  575

Query  963  CAACAAGAAAGCAGATGGAGTCAAGCCCCAGACGAATAGCACCAAAAACAGTGCAGCCGCCACCAGCCCCAAAG  1036
               .||||||.|||||||.||.||                                                  
Sbjct  576  ---GAAGAAACCAGATGGGGTAAA--------------------------------------------------  596

Query 1037  GGACGCTTCCTCCTGCCGCCCTGGAGTCTTCTGACAGTGCCAATACCACCATAGAGGATGAAGACGCTAAAGCC  1110
                                  ||||||..||||.||..|.||.||||||||.|||||||||||||..|||||.
Sbjct  597  ----------------------GGAGTCAACTGAGAGCTCAAACACCACCATTGAGGATGAAGACGTGAAAGCA  648

Query 1111  CGGAAGCAGGAGATCATTAAGACCACGGAGCAGCTCATCGAGGCCGTCAACAACGGTGACTTTGAGGCCTACGC  1184
            ||.||.|||||||||||.||...|||.|||||.||.||.||.||..|||||||.||.|||||||||||.|||.|
Sbjct  649  CGAAAACAGGAGATCATCAAAGTCACTGAGCAACTGATTGAAGCTATCAACAATGGGGACTTTGAGGCTTACAC  722

Query 1185  GAAAATCTGTGACCCAGGGCTGACCTCGTTTGAGCCTGAAGCACTGGGCAACCTGGTTGAAGGGATGGACTTCC  1258
            .|||||||||||.|||||.||.||..|.|||||.|||||||||.||||||||.|.||.||||||||||||||.|
Sbjct  723  AAAAATCTGTGATCCAGGCCTCACTGCCTTTGAACCTGAAGCATTGGGCAACTTAGTGGAAGGGATGGACTTTC  796

Query 1259  ACAGATTCTACTTCGAGAACCTGC--TGGCCAAGAACAGCAAGCCGATCCACACGACCATCCTGAACCCACACG  1330
            |||||||||||||.||.||  |||  ||.||||.|.||..||.||.||||||||||.||||||.||||||||||
Sbjct  797  ACAGATTCTACTTTGAAAA--TGCTTTGTCCAAAAGCAATAAACCAATCCACACGATCATCCTCAACCCACACG  868

Query 1331  TGCACGTCATTGGAGAGGATGCCGCCTGCATCGCTTACATCCGGCTCACGCAGTACATTGACGG--GCAGG--G  1400
            |.|||.|..|.||.||.||.||.|||||||||||.|||||.||||||||.||||||||.|||||  ||.||  |
Sbjct  869  TTCACCTGGTAGGGGATGACGCAGCCTGCATCGCATACATTCGGCTCACACAGTACATGGACGGAAGCGGGATG  942

Query 1401  CC---GGCCCCGCACCAGCCAGTCTGAGGAGACCCGCGTGTGGCCCCGC-------------TGCAG-------  1451
            ||   |       ||||..|||||.||.|||||.||||||||||.||||             .||||       
Sbjct  943  CCAAAG-------ACCATGCAGTCAGAAGAGACGCGCGTGTGGCACCGCCGTGATGGGAAGTGGCAGAATGTTC  1009

Query 1452  --------------------------------------------------------------------------  1451
                                                                                      
Sbjct 1010  ACTTTCACCGTTCGGGGTCCCCCACAGTACCCATCAAGCCACCCTGTATTCCAAATGGGAAAGAGAACTTCTCA  1083

Query 1452  ---------------------------  1451
                                       
Sbjct 1084  GGAGGCACCTCTTTGTGGCAAAACATC  1110