Nucleotide Global Alignment

Description

Query:
TRCN0000468031
Subject:
XM_006518500.3
Aligned Length:
1782
Identities:
977
Gaps:
595

Alignment

Query    1  ATGGCCACCACGGTGACCTGCACCCGCTTCACCGACGAGTACCAGCTCTACGAGGATATTGGCAAGGGGGCTTT  74
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query   75  CTCTGTGGTCCGACGCTGTGTCAAGCTCTGCACCGGCCATGAGTATGCAGCCAAGATCATCAACACCAAGAAGC  148
                                                                                      
Sbjct    1  --------------------------------------------------------------------------  0

Query  149  TGTCAGCCAGAGATCACCAGAAGCTGGAGAGAGAGGCTCGGATCTGCCGCCTTCTGAAGCATTCCAACATCGTG  222
                                                       .|||||.||||||||.|||.|.|||||.|| 
Sbjct    1  -------------------------------------------ATGCCGACTTCTGAAACATCCAAACATTGT-  30

Query  223  CGTCTCCACGACAGCATCTCCGAGGAGGGCTTCCACTACCTGGTCTTCGATCTGGTCACTGGTGGGGAGCTCTT  296
                                                                  ||.||.||.||||||.|.||
Sbjct   31  ------------------------------------------------------GTTACCGGAGGGGAGTTGTT  50

Query  297  TGAAGACATTGTGGCGAGAGAGTACTACAGCGAGGCTGATGCCAGTCACTGTATCCAGCAGATCCTGGAGGCCG  370
            |||||||||||||||.||||||||||||||.||.|||||||||||.||||||||.||.||||||||||||...|
Sbjct   51  TGAAGACATTGTGGCCAGAGAGTACTACAGTGAAGCTGATGCCAGCCACTGTATACATCAGATCCTGGAGAGTG  124

Query  371  TTCTCCATTGTCACCA-AATGGGGGTCGTCCACAGAGACCTCAAGCCGGAGAACCTGCTTCTGGCCAGCAAGTG  443
            ||..|||....||||| .|| |...||||||||.|.||.||.|||||.||||||.||||.|||||.||.||.||
Sbjct  125  TTAACCACATCCACCAGCAT-GACATCGTCCACCGGGATCTGAAGCCTGAGAACTTGCTGCTGGCGAGTAAATG  197

Query  444  CAAAGGGGCTGCAGTGAAGCTGGCAGACTTCGGCCTAGCTATCGAGGTGCAGGGGGACCAGCAGGCATGGTTTG  517
            |||.||.|||||.||.|||||.||.||.||.|||||.||.|||||.||.|||||.||.||||||||.|||||||
Sbjct  198  CAAGGGTGCTGCGGTCAAGCTAGCTGATTTTGGCCTGGCCATCGAAGTACAGGGAGAGCAGCAGGCTTGGTTTG  271

Query  518  GTTTCGCTGGCACACCAGGCTACCTGTCCCCTGAGGTCCTTCGCAAAGAGGCGTATGGCAAGCCTGTGGACATC  591
            ||||.||.|||||.|||||.|||.||||||||||||||.|..|.|||||..|.|||||.||.||||||||||||
Sbjct  272  GTTTTGCCGGCACCCCAGGTTACTTGTCCCCTGAGGTCTTGAGGAAAGATCCCTATGGAAAACCTGTGGACATC  345

Query  592  TGGGCATGTGGGGTGATCCTGTACATCCTGCTCGTGGGCTACCCACCCTTCTGGGACGAGGACCAGCACAAGCT  665
            |||||.||.|||||.||||||||.|||||.||.|||||||||||.|||||||||||.|||||.|||||||||||
Sbjct  346  TGGGCCTGCGGGGTCATCCTGTATATCCTCCTGGTGGGCTACCCTCCCTTCTGGGATGAGGATCAGCACAAGCT  419

Query  666  GTACCAGCAGATCAAGGCTGGTGCCTATGACTTCCCGTCCCCTGAGTGGGACACCGTCACTCCTGAAGCCAAAA  739
            |||.|||||||||||.|||||.|||||.||.|||||.||.||.||.||||||||.||||||||||||||.||.|
Sbjct  420  GTATCAGCAGATCAAAGCTGGAGCCTACGATTTCCCATCACCAGAATGGGACACAGTCACTCCTGAAGCTAAGA  493

Query  740  ACCTCATCAACCAGATGCTGACCATCAACCCTGCCAAGCGCATCACAGCCCATGAGGCCCTGAAGCACCCGTGG  813
            ||.|.||||||||||||||||||||.||||||||.|||||||||||.|||.|..||||.||.||||||||.|||
Sbjct  494  ACTTGATCAACCAGATGCTGACCATAAACCCTGCAAAGCGCATCACGGCCGACCAGGCTCTCAAGCACCCATGG  567

Query  814  GTCTGCCAACGCTCCACGGTAGCATCCATGATGCACAGACAGGAGACTGTGGAGTGTCT---GAAAAAGTTCAA  884
            |||||.|||||.||.|||||.||||||||||||||..|.||.|||||.||.||||| ||   |.|||  |||||
Sbjct  568  GTCTGTCAACGGTCTACGGTGGCATCCATGATGCATCGCCAAGAGACGGTAGAGTG-CTTACGCAAA--TTCAA  638

Query  885  TGCCAGGAGAAAGCTCAAGGGAGCCATCCTCACCACCATGCTGGCCACACGGAATTTCTC--------------  944
            .|||.|||||||.||.|||||.|||||||||||.||||||||.|.|.|..||||.||.||              
Sbjct  639  CGCCCGGAGAAAACTGAAGGGTGCCATCCTCACAACCATGCTTGTCTCCAGGAACTTTTCAGTTGGCAGGCAGA  712

Query  945  -------------------------------------------------AGCAGCCAAGAGTTTACTCAACAAG  969
                                                             |||.|||||.||..||.|.||||||
Sbjct  713  GCTCCGCCCCCGCCTCGCCTGCCGCGAGCGCCGCCGGCCTGGCCGGGCAAGCTGCCAAAAGCCTATTGAACAAG  786

Query  970  AAAGCAGATGG-----------------AGTCAAGCCCCAGACG-------AAT----------AGCACCAAAA  1009
            ||..|||||||                 ||||.||..|||| ||       |||          |.||.|||||
Sbjct  787  AAGTCAGATGGCGGTGTCAAGAAAAGGAAGTCGAGTTCCAG-CGTGCACCTAATGCCACAGAGCAACAACAAAA  859

Query 1010  ACAGTGC-----AGCCGCCACCAGCCCCAAAGGGAC-GCTTCCTCCTG----CCGCCCTGGA------------  1061
            ||||| |     |||     |||||||  |||.|.| ||..|||  ||    |.|||.||||            
Sbjct  860  ACAGT-CTCGTAAGC-----CCAGCCC--AAGAGCCTGCGCCCT--TGCAGACGGCCATGGAACCACAAACCAC  923

Query 1062  -GT-----------CTTCTG-----------------ACAG-----TGCCAATACCACCATAGAGGATGAAGA-  1100
             ||           ||.|.|                 ||||     || .||.|||||.|.|||.||.||||| 
Sbjct  924  CGTGGTACATAATGCTACAGATGGGATCAAGGGCTCCACAGAGAGCTG-TAACACCACTACAGAAGACGAAGAT  996

Query 1101  ------------------CG-----------------------CTAAAG---------CCCGG-----------  1113
                              ||                       ||.|||         |||||           
Sbjct  997  CTCAAAGCTGCCCCACTCCGCACTGGGAATGGCAGCTTGGTGCCTGAAGGACGGAGCCCCCGGGACAGAACAGC  1070

Query 1114  ----------------------------------------------------AAGCAGGAGATCATTAAGACCA  1135
                                                                ||.||.||.||||||||||.||
Sbjct 1071  CCCCTCTGCAGGCATGCAGCCCCAGCCTTCTCTCTGCTCCTCAGCCATGAGAAAACAAGAAATCATTAAGATCA  1144

Query 1136  CGGAGCAGCTCATCGAGGCCGTCAACAACGGTGACTTTGAGGCCTACGCGAAAATCTGTGACCCAGGGCTGACC  1209
            |.||.||.||.|||||.|||.|||||||.||.|||||||||||||||.||||.||.||||||||.||.||.||.
Sbjct 1145  CAGAACAACTGATCGAAGCCATCAACAATGGGGACTTTGAGGCCTACACGAAGATTTGTGACCCGGGCCTCACA  1218

Query 1210  TCGTTTGAGCCTGAAGCACTGGGCAACCTGGTTGAAGGGATGGACTTCCACAGATTCTACTTCGAGAACCTGCT  1283
            ||.||||||||.|||||.||.||.|||||.||.|||||.|||||.|||||.|..||.|||||.|||||.||.||
Sbjct 1219  TCCTTTGAGCCAGAAGCCCTTGGTAACCTCGTGGAAGGAATGGATTTCCATAAGTTTTACTTTGAGAATCTCCT  1292

Query 1284  GGCCAAGAACAGCAAGCCGATCCACACGACCATCCTGAACCCACACGTGCACGTCATTGGAGAGGATGCCGCCT  1357
            |.||||||||||||||||.||||||||.||||||||.|||||.|||||.|||||.|||||.|||||.||.||.|
Sbjct 1293  GTCCAAGAACAGCAAGCCTATCCACACCACCATCCTAAACCCTCACGTCCACGTGATTGGGGAGGACGCAGCTT  1366

Query 1358  GCATCGCTTACATCCGGCTCACGCAGTACATTGACGGGCAGGGCCGGCCCCGCACCAGCCAGTCTGAGGAGACC  1431
            |||||||.||.|||||||||||.||||||||.|||||||||||.|||||.||||||||.|||||.|||||||||
Sbjct 1367  GCATCGCCTATATCCGGCTCACTCAGTACATCGACGGGCAGGGTCGGCCTCGCACCAGTCAGTCAGAGGAGACC  1440

Query 1432  CGCGTGTGGCCCCGCTGCAG------------------------------------------------------  1451
            ||.|||||||.||||  |.|                                                      
Sbjct 1441  CGGGTGTGGCACCGC--CGGGATGGCAAGTGGCTCAATGTCCACTATCACTGCTCAGGGGCCCCTGCCGCACCG  1512

Query 1452  ------  1451
                  
Sbjct 1513  CTACAG  1518

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