Nucleotide Global Alignment

Description

Query:
TRCN0000468049
Subject:
XR_001781535.1
Aligned Length:
2185
Identities:
1167
Gaps:
861

Alignment

Query    1  --------------------------------------------------------------------------  0
                                                                                      
Sbjct    1  CCCTATTCTGAAAAGTCCATTGTGTACCTTGTCACCAGCTCGTCTGATCCTTCTCTGAGCCCTCCTGAGCTGGA  74

Query    1  -------------ATGGCTGACTCAGAAGCACTCCCCTCCCTTGCTGGGGACCCAGTGGCTGTGGAAGCCTTGC  61
                         ||||||||||||.||.|||||....||||.|.|||||||||.|||||||||||.|||||||
Sbjct   75  AGATTTCATCCTGATGGCTGACTCAAAACCACTCAGGACCCTGGATGGGGACCCCGTGGCTGTGGAGGCCTTGC  148

Query   62  TCCGGGCCGTGTTTGGGGTTGTTGTGGATGAGGCCATTCAGAAAGGAACCAGTGTCTCCCAGAAGGTCTGTGAG  135
            |||.||.||||||||||.|||||||.|||||||||||||.|||.||.|||||||.|||..||||||||||.||.
Sbjct  149  TCCAGGACGTGTTTGGGATTGTTGTAGATGAGGCCATTCTGAAGGGGACCAGTGCCTCTGAGAAGGTCTGCGAA  222

Query  136  TGGAAGGAGCCTGAGGAGCTGAAGCAGCTGCTGGATTTGGAGCTGCGGAGCCAGGGCGAGTCACAGAAGCAGAT  209
            ||||||||||||||.||.||.||||||||||||||.||||||||||.|||||||||||||||.|.|.|||||||
Sbjct  223  TGGAAGGAGCCTGAAGAACTCAAGCAGCTGCTGGACTTGGAGCTGCAGAGCCAGGGCGAGTCCCGGGAGCAGAT  296

Query  210  CCTGGAGCGGTGTCGGGCTGTGATTCGCTACAGTGTCAAGACTGGTCACCCTCGGTTCTTCAACCAGCTCTTCT  283
            |||||||||.||.|||.|||||||||.||||||||||||||||||||||||.||||||||||||||||||||||
Sbjct  297  CCTGGAGCGCTGCCGGACTGTGATTCACTACAGTGTCAAGACTGGTCACCCCCGGTTCTTCAACCAGCTCTTCT  370

Query  284  CTGGGTTGGATCCCCATGCTCTGGCCGGGCGCATTATCACTGAGAGCCTCAACACCAGCCAGTACACATATGAA  357
            |.|||||.|||||||||||||||||.||||||||.|||||.||||||||||||||.|||||||||||||||||.
Sbjct  371  CAGGGTTAGATCCCCATGCTCTGGCTGGGCGCATCATCACGGAGAGCCTCAACACTAGCCAGTACACATATGAG  444

Query  358  ATCGCCCCCGTGTTTGTGCTCATGGAAGAGGAGGTGCTGAGGAAACTGCGGGCCCTGGTGGGCTGGAGCTCTGG  431
            ||.|||||||||||||||||||||||||||||||||||||.||||||.||.||||||||||||||||.||||||
Sbjct  445  ATTGCCCCCGTGTTTGTGCTCATGGAAGAGGAGGTGCTGAAGAAACTCCGTGCCCTGGTGGGCTGGAACTCTGG  518

Query  432  GGACGGAATCTTCTGCCCTGGTGGCTCCATCTCCAACATGTATGCTGTAAATCTGGCCCGCTATCAGCGCTACC  505
            |||.||..|||||||.||||||||||||||||||||||||||.||..|.||.||||||||||.|||||||||||
Sbjct  519  GGATGGGGTCTTCTGTCCTGGTGGCTCCATCTCCAACATGTACGCCATGAACCTGGCCCGCTTTCAGCGCTACC  592

Query  506  CGGATTGCAAGCAGAGGGGCCTCCGCACACTGCCGCCCCTGGCCCTATTCACATCGAAGGAGTGTCACTACTCC  579
            |.||.||||||||||||||||||||..|.|||||||||.||||.||.|||||.||.||||||||||||||||||
Sbjct  593  CAGACTGCAAGCAGAGGGGCCTCCGGGCCCTGCCGCCCTTGGCTCTCTTCACTTCAAAGGAGTGTCACTACTCC  666

Query  580  ATCCAGAAGGGAGCTGCGTTTCTGGGACTTGGCACCGACAGTGTCCGAGTGGTCAAGGCTGATGAGAGAGGGAA  653
            |||...|||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||.
Sbjct  667  ATCACCAAGGGAGCTGCTTTTCTGGGACTTGGCACCGACAGTGTCCGAGTGGTCAAGGCTGATGAGAGAGGGAG  740

Query  654  AATGGTCCCCGAGGATCTGGAGAGGCAGATTGGTATGGCCGAGGCTGAGGGTGCTGTGCCGTTCCTGGTCAGTG  727
            .|||.||||.|||||.||||||||||||||...|.||||.|||||||||||..|||||||.||.||||||||||
Sbjct  741  GATGATCCCTGAGGACCTGGAGAGGCAGATCATTCTGGCAGAGGCTGAGGGCTCTGTGCCATTTCTGGTCAGTG  814

Query  728  CCACCTCTGGCACCACTGTGCTAGGGGCCTTTGACCCCCTGGAGGCAATTGCTGATGTGTGCCAGCGTCATGGG  801
            ||||||||||.|||||.||||||||||||||||||||||||||.||||||||.|||||.||||||||.||.||.
Sbjct  815  CCACCTCTGGTACCACCGTGCTAGGGGCCTTTGACCCCCTGGATGCAATTGCCGATGTTTGCCAGCGACACGGA  888

Query  802  CTATGGCTGCATGTGGATGCTGCCTGGGGTGGGAGCGTCCTGCTGTCACAGACACACAGGCATCTCCTGGATGG  875
            ||.|||.|.|||||||||                                                        
Sbjct  889  CTGTGGTTCCATGTGGAT--------------------------------------------------------  906

Query  876  GATCCAGAGGGCTGACTCTGTGGCCTGGAATCCCCACAAGCTCCTCGCAGCAGGCCTGCAATGCTCTGCACTTC  949
                     |||||||||||||||||||||.||.||||||||.|||||.|||||.|||||.|||||.||.||||
Sbjct  907  ---------GGCTGACTCTGTGGCCTGGAACCCTCACAAGCTTCTCGCCGCAGGGCTGCAGTGCTCCGCTCTTC  971

Query  950  TTCTCCAGGATACCTCGAACCTGCTCAAGCGCTGCCATGGGTCCCAGGCCAGCTACCTTTTCCAGCAGGACAAG  1023
            ||||||.|||.|||||||||||||||||||||||||||||.|||||||||||||||||.||||||||.||||||
Sbjct  972  TTCTCCGGGACACCTCGAACCTGCTCAAGCGCTGCCATGGATCCCAGGCCAGCTACCTCTTCCAGCAAGACAAG  1045

Query 1024  TTCTACGATGTGGCTCTGGACACGGGAGACAAGGTGGTGCAGTGTGGCCGCCGTGTGGACTGTCTGAAGCTGTG  1097
            |||||||||||||||||||||||.||||||||.||||||||||||||||||||.|||||||||||||||||.||
Sbjct 1046  TTCTACGATGTGGCTCTGGACACCGGAGACAAAGTGGTGCAGTGTGGCCGCCGCGTGGACTGTCTGAAGCTATG  1119

Query 1098  GCTCATGTGGAAGGCACAGGGCGATCAAGGGCTGGAGCGGCGCATCGACCAGGCCTTTGTCCTTGCCCGGTACC  1171
            |||||||||||||||||||||.|..||.|||.|||||||||||||||||||||||||||..||..||||||||.
Sbjct 1120  GCTCATGTGGAAGGCACAGGGTGGGCAGGGGTTGGAGCGGCGCATCGACCAGGCCTTTGCTCTCACCCGGTACT  1193

Query 1172  TGGTGGAGGAAATGAAGAAGCGGGAAGGGTTTGAGCTAGTCATGGAGCCTGAGTTTGTCAATGTGTGTTTCTGG  1245
            ||||||||||.||.||.|||||||||||.||||||.|.||.||||                             
Sbjct 1194  TGGTGGAGGAGATTAAAAAGCGGGAAGGATTTGAGTTGGTAATGG-----------------------------  1238

Query 1246  TTCGTACCCCCCAGCCTGCGAGGGAAGCAGGAGAGTCCAGATTACCACGAAAGGCTGTCAAAGGTGGCCCCCGT  1319
                                                                         ||||||||||.||
Sbjct 1239  -------------------------------------------------------------AGGTGGCCCCTGT  1251

Query 1320  GCTCAAGGAGCGCATGGTGAAGGAGGGCTCCATGATGATTGGCTACCAGCCCCACGGGACCCGGGGCAACTTCT  1393
            ||||||||||||||||||||||.||||..|||||||||||||||||||||||||.||||||||||.||||||||
Sbjct 1252  GCTCAAGGAGCGCATGGTGAAGAAGGGGACCATGATGATTGGCTACCAGCCCCATGGGACCCGGGCCAACTTCT  1325

Query 1394  TCCGTGTGGTTGTGGCCAACTCTGCACTGACCTGTGCTGATATGGACTTCCTCCTCAACGAGCTGGAGCGGCTA  1467
            ||||..||||.|||||||||.|...||||.||...||.|||||.||.|||||.||...|||||||||||..||.
Sbjct 1326  TCCGAATGGTGGTGGCCAACCCCATACTGGCCCAGGCCGATATAGATTTCCTTCTGGGCGAGCTGGAGCTCCTG  1399

Query 1468  GGCCAGGACCTG--------------------------------------------------------------  1479
            ||||||||||||                                                              
Sbjct 1400  GGCCAGGACCTGTGAGCTGCTTCTGCTCTCTGCCCCACCCAAGCTCTGCGTAGTCTCCTGGGTTCTCAAAATCG  1473

Query 1480  --------------------------------------------------------------------------  1479
                                                                                      
Sbjct 1474  ACCTTTCTAGGAAACAGTGGCCTTGACTGTGTGTGCTCCCACACACTCACTCTCCCAGCTAAGTATTGGCTGTC  1547

Query 1480  --------------------------------------------------------------------------  1479
                                                                                      
Sbjct 1548  AGGAAGGTGTCTAAACACACTACAGTATGTTCTTACGAAATATGCTTTTATTAAGTTGGGCACAGGGGCACACA  1621

Query 1480  --------------------------------------------------------------------------  1479
                                                                                      
Sbjct 1622  CCTTTACTACCAGCATTGGGGGGACAGAAGCAGCCAGTTTGAGGCCAGCCTGGACTACAGAGCTGGGCTACACA  1695

Query 1480  --------------------------------------------------------------------------  1479
                                                                                      
Sbjct 1696  GAGAAACTGTCTCAAAAAGAAAAAAAGAAAAGAAAAAAAGAAATATTTTTCATTAAAATTATGTTTATAAAGAA  1769

Query 1480  --------------------------------------------------------------------------  1479
                                                                                      
Sbjct 1770  TTTTTATTAATATGAGAGAAATGGTACAATGTATTGAAAAGCTGGATATGAGTTTATGAATCACAGTATCTGAG  1843

Query 1480  --------------------------------------------------------------------------  1479
                                                                                      
Sbjct 1844  TTAGGCTAAAAATCACATAGGAAAAGGCTGTCGGTGGAACTGTGCCAAAGGTCAGCAGTTTTCCCTGGAACGGG  1917

Query 1480  --------------------------------------------------------------------------  1479
                                                                                      
Sbjct 1918  ATATTAGGTTATTCCCAAATCAACCTCTCAGACCTTTTGTGCTTCCCCATTTTATTGTGTAACAACATCACATA  1991

Query 1480  ---------------------------------------  1479
                                                   
Sbjct 1992  CTTCTGAAATAGGACAATAAAGCTGCGGTTTCCATTATA  2030

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