Nucleotide Global Alignment
Description
- Query:
- TRCN0000468200
- Subject:
- XR_377290.3
- Aligned Length:
- 2789
- Identities:
- 1428
- Gaps:
- 1225
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 AAAATGTTCATAATGTGGTTTTATTTTTATTCATTTTTCATTAGGTTCTGATGAAGTACGCCAAAGTTAAACTA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 GGGAATTGCTTATATGTTAAAAACAAAAACAAAACGAGTAAAGACTTGTTTGAATGGCGATCACTTGGAAAATA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 GGAAGAAAAAGAAATACGTATGTTGTCAGTTTCTCTGGAAAACCCTTCACCGTGCTGTTTGGGAAAAACAAAAC 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAATAGCAGAAGCTAGTACAAAGGGAACCAAAATTTCTCTTCAGGCCTAATGAGCAGGAGTGCATCTCTTCTAG 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTCGTCTGGATTTCATTGATACCTTTAAGCCCCAGTCCTGGGAGACACAGCTTTAAGACTCCTGGAAACCTTGT 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTACGTCCTGGAAATCTTGATTGCAACCGAATTCTGACTCCACTTTAAGGTAGACCTAGGAACGCTTTGGGCCT 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 CAGTTTCCCTCCGTCTATCACCCCAGGACCTGGCAACTGTTGCAGGCTCCCCCCCCAGACATTACAAAGTGTGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GGAGCACGCCCGGCTCTCGGAAGCGCTCTACACCCGCGAGCTGTTACGTCAGTGGGTCCCTCGGCGGCGCCCGG 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 GCTGTCCTCCTAAAATACTAGTACAAGAAGTATAAATGGCCCGGGAGAGTGCAGGGACCGGGCCCACGTGACCG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 CTCCACGAAGGCCACCGGCGGGGGCTCGGAGCGCAGGCCGCGCGCTTTCCCGCCGCATCCGGGCGCCGGGCGAG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CTCCGGGGACGCCGGGCCCTGGCGGCGGCGGCGGCTCGAGCCGTGCCTCGGGCGGGTGAATCATCCCGGCCGAC 814
Query 1 ------------------------------------ATGGCTGAAGCGGCCACGGGCTTTCTGGAGCAGCTCAA 38
|||||.||.||||.|.|||||||.||||||||||||||
Sbjct 815 AGCGAGCGCCGCGGCGGCCCGTAGCAGCGCCGGAAGATGGCCGAGGCGGGCGCGGGCTTCCTGGAGCAGCTCAA 888
Query 39 GTCCTGCATAGTTTGGTCTTGGACGTATCTGTGGACCGTGTGGTTCTTCATCGTGCTATTCCTGGTCTACATCC 112
|||||||||.||.|||||.|||||.||||||||||||||||||||||||.|||||||.||||||||||||||||
Sbjct 889 GTCCTGCATCGTGTGGTCGTGGACCTATCTGTGGACCGTGTGGTTCTTCCTCGTGCTCTTCCTGGTCTACATCC 962
Query 113 TGCGGGTGCCTTTGAAAATCAACGACAACTTGAGCACAGTGAGCATGTTTTTGAACACATTAACACCGAAGTTC 186
||.|||||||..|||..||||||||||||.||||||||||||||||||||||||||||.|||||.||.||||||
Sbjct 963 TGAGGGTGCCCCTGAGGATCAACGACAACCTGAGCACAGTGAGCATGTTTTTGAACACGTTAACCCCAAAGTTC 1036
Query 187 TACGTGGCCCTAACAGGCACTTCCTCACTAATATCAGGGCTTATTTTGATATTTGAATGGTGGTATTTTCGCAA 260
|||||||||||.||||||||||||||.||||||||.||.|||||||||||||||||||||||||||||||||||
Sbjct 1037 TACGTGGCCCTGACAGGCACTTCCTCGCTAATATCGGGACTTATTTTGATATTTGAATGGTGGTATTTTCGCAA 1110
Query 261 ATACGGAACTTCATTCATTGAACAAGTCTCAGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAACAACT 334
.||.|||||.||.|||||||||||||||||.|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GTATGGAACATCTTTCATTGAACAAGTCTCCGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAACAACT 1184
Query 335 CTTCCAACAATTCTAATTCCAGTAACGGGGACTCAGATTCCAATAGGCAAAGTGTCTCAGAATGCAAAGTATGG 408
|||||||.|||||||||||||||||.||.||||||||||||||.||.|||||||||||||||||||||||||||
Sbjct 1185 CTTCCAATAATTCTAATTCCAGTAATGGAGACTCAGATTCCAACAGACAAAGTGTCTCAGAATGCAAAGTATGG 1258
Query 409 CGAAATCCACTAAATTTATTTAGGGGTGCTGAATACAATCGGTATACTTGGGTGACAGGACGAGAGCCTCTTAC 482
|||||||||||.|||.|.|||||||||||.|||||.||||||||.||||||||.|||||||||||||||||.||
Sbjct 1259 CGAAATCCACTGAATCTGTTTAGGGGTGCGGAATATAATCGGTACACTTGGGTCACAGGACGAGAGCCTCTGAC 1332
Query 483 TTACTATGACATGAATCTCTCTGCCCAAGACCACCAGACATTCTTTACTTGTGACTCGGACCATCTGCGTCCCG 556
.||||||||||||||.|||||||||||.||||||||||||||||||||||||||.||.||.|||||.||.||.|
Sbjct 1333 CTACTATGACATGAACCTCTCTGCCCAGGACCACCAGACATTCTTTACTTGTGATTCAGATCATCTTCGCCCTG 1406
Query 557 CAGATGCAATAATGCAGAAAGCCTGGAGAGAGAGAAACCCCCAAGCTAGGATTTCTGCAGCTCATGAAGCCTTG 630
||||||||||||||||.|||||.||||||||.||.|||||.|||||.|||||||||||||||||||||||||||
Sbjct 1407 CAGATGCAATAATGCAAAAAGCTTGGAGAGAAAGGAACCCTCAAGCCAGGATTTCTGCAGCTCATGAAGCCTTG 1480
Query 631 GAGATAAATGAAATTAGGTCCAGAGTTGAAGTTCCCCTAATTGCTTCCTCTACCATCTGGGAGATAAAATTGTT 704
||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 GAGATAAACGAAATTAGGTCCAGAGTTGAAGTTCCCCTAATTGCTTCCTCTACCATCTGGGAGATAAAATTGTT 1554
Query 705 ACCAAAGTGTGCAACTGCTTATATTCTCTTGGCTGAAGAGGAAGCAACAACCATTGCTGAAGCAGAAAAATTAT 778
||||||||||||||||||.||.|||||||||||.|||||.|||||.|||||.||||||||||||||||||.|.|
Sbjct 1555 ACCAAAGTGTGCAACTGCGTACATTCTCTTGGCGGAAGAAGAAGCGACAACTATTGCTGAAGCAGAAAAACTCT 1628
Query 779 TTAAGCAGGCCCTGAAGGCTGGAGATGGCTGTTACCGACGCTCTCAGCAGCTACAACATCATGGATCCCAGTAT 852
||||||||||||||||||||||||||||.||||||||.||||||||||||||||||||||||||.|||||||||
Sbjct 1629 TTAAGCAGGCCCTGAAGGCTGGAGATGGTTGTTACCGGCGCTCTCAGCAGCTACAACATCATGGGTCCCAGTAT 1702
Query 853 GAAGCCCAACATAGACGAGACACCAATGTCTTGGTGTACATCAAAAGAAGGCTAGCAATGTGTGCCAGAAGACT 926
|||||.|||||.||||||||||||||||||||.||.||.||||||||||||||.||.|||||||||.|.|||||
Sbjct 1703 GAAGCTCAACACAGACGAGACACCAATGTCTTAGTCTATATCAAAAGAAGGCTGGCGATGTGTGCCCGGAGACT 1776
Query 927 CGGGAGGACCAGGGAAGCAGTGAAAATGATGAGAGATTTAATGAAGGAGTTCCCCCTTCTGAGTATGTTCAATA 1000
.||.||||||||.|||||||||||.||||||||||||||||||||||||||.|||||.||.||.||||||||||
Sbjct 1777 TGGAAGGACCAGAGAAGCAGTGAAGATGATGAGAGATTTAATGAAGGAGTTTCCCCTCCTAAGCATGTTCAATA 1850
Query 1001 TCCATGAAAACCTTTTAGAAGCCCTTCTGGAACTACAAGCATATGCTGATGTTCAGGCAGTCTTAGCAAAGTAT 1074
|||||||.||||||.|||||||.|||||||||||.|||||.|||||||||||||||||||||||||||||||||
Sbjct 1851 TCCATGAGAACCTTCTAGAAGCTCTTCTGGAACTCCAAGCTTATGCTGATGTTCAGGCAGTCTTAGCAAAGTAT 1924
Query 1075 GATGATATAAGCTTACCAAAGTCAGCAACAATATGCTACACAGCTGCTTTGCTCAAAGCAAGAGCTGTCTCTGA 1148
|||||||||||||||||||||||.||.|||||||||||||||||.||..|||||||||||||||||||||||||
Sbjct 1925 GATGATATAAGCTTACCAAAGTCGGCGACAATATGCTACACAGCCGCCCTGCTCAAAGCAAGAGCTGTCTCTGA 1998
Query 1149 CAAATTCTCTCCTGAGGCTGCATCTCGGCGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAGGCCATTCATA 1222
||||||||||||.||||||||.||||||.||||||||||||||||||||||||||||||||||.|||||.||.|
Sbjct 1999 CAAATTCTCTCCAGAGGCTGCGTCTCGGAGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAAGCCATCCACA 2072
Query 1223 GAGCTGTGGAATTCAATCCTCATGTGCCAAAATACCTACTAGAAATGAAAAGCTTAATCCTACCCCCAGAACAT 1296
|||||||||||||.|||||.||.||||||||
Sbjct 2073 GAGCTGTGGAATTTAATCCACACGTGCCAAA------------------------------------------- 2103
Query 1297 ATCCTGAAGAGAGGAGACAGTGAAGCAATAGCATATGCATTCTTTCATCTTGCACACTGGAAGAGAGTGGAAGG 1370
Sbjct 2104 -------------------------------------------------------------------------- 2103
Query 1371 GGCTTTGAATCTTTTGCATTGTACGTGGGAAGGCACTTTTCGGATGATCCCTTATCCCTTGGAAAAGGGGCACC 1444
|||||.|||||||||||.||||||.||||.|||||.||||
Sbjct 2104 ----------------------------------ACTTTCCGGATGATCCCGTATCCCCTGGAGAAGGGACACC 2143
Query 1445 TATTTTATCCTTACCCAATCTGTACAGAAACAGCAGACCGAGAGCTGCTTCCATCTTTCCATGAAGTCTCAGTT 1518
||||||||||.|||||||||||||||||||||||.|||||.|||||||||||.|||||||||||||||||||||
Sbjct 2144 TATTTTATCCATACCCAATCTGTACAGAAACAGCTGACCGGGAGCTGCTTCCCTCTTTCCATGAAGTCTCAGTT 2217
Query 1519 TACCCAAAGAAGGAGCTTCCCTTCTTTATTCTCTTTACTGCTGGATTATGTTCCTTCACAGCCATGCTGGCCCT 1592
||||||||||||||.|||||||||||.||.|||||.|||||||||.|.||.|||||||||||||||||||||||
Sbjct 2218 TACCCAAAGAAGGAACTTCCCTTCTTCATCCTCTTCACTGCTGGACTGTGCTCCTTCACAGCCATGCTGGCCCT 2291
Query 1593 CCTGACACATCAGTTCCCGGAACTTATGGGGGTCTTCGCAAAAGCTATGATTGACATTTTCTGCTCGGCAGAGT 1666
|||||||||||||||.||||||||||||||.|||||||||||||| |||| |||.||
Sbjct 2292 CCTGACACATCAGTTTCCGGAACTTATGGGAGTCTTCGCAAAAGC------------TTTC--CTCAGC----- 2346
Query 1667 TCAGGGACTGGAATTG--------CAAGAGTATTTTCATGCGTGTTGAAGATGAACTGGAAATC--CCTCC--- 1727
||| ||| |..|| |.||| ||..||.||| ||.||||||.| |||||
Sbjct 2347 ------ACT----TTGTTTGCCCCCTTGA--ACTTT-----GTTATGGAGA--AAGTGGAAAGCATCCTCCCCT 2401
Query 1728 ---------GGCA------------------------CCT-CAAT--TTCAACATTTCCAAAAC---------- 1755
|||| ||| |.|| |||| .||||||.|.|
Sbjct 2402 CCAGTTTGTGGCATCAGCTGACACGGATCTGAGGGAGCCTCCCATCCTTCA--CTTTCCACACCATCCACCATC 2473
Query 1756 -------------------------------------------------------------------------- 1755
Sbjct 2474 TCTTCTGTGCCAACCTCTCATGGACCGCAAGAAAGCATGACTTTGAAAAAGGGAAACCATTCTGAGATTTTAAA 2547
Query 1756 --------------------------------------------------- 1755
Sbjct 2548 CTGCTCATGGACTATCAGTTCCTTATTAAAGGCTGGTTTTGTTGTACAAAA 2598
