Nucleotide Global Alignment
Description
- Query:
- TRCN0000468200
- Subject:
- XR_868763.2
- Aligned Length:
- 3021
- Identities:
- 1572
- Gaps:
- 1306
Alignment
Query 1 -------------------------------------------------------------------------- 0
Sbjct 1 TGGGAAAATGTTCATAATGTGGTTTTATTTTTATTCATTTTTCATTAGGTTCTGATGAAGTACGCCAAAGTTAA 74
Query 1 -------------------------------------------------------------------------- 0
Sbjct 75 ACTAGGGAATTGCTTATATGTTAAAAACAAAAACAAAACGAGTAAAGACTTGTTTGAATGGCGATCACTTGGAA 148
Query 1 -------------------------------------------------------------------------- 0
Sbjct 149 AATAGGAAGAAAAAGAAATACGTATGTTGTCAGTTTCTCTGGAAAACCCTTCACCGTGCTGTTTGGGAAAAACA 222
Query 1 -------------------------------------------------------------------------- 0
Sbjct 223 AAACAAATAGCAGAAGCTAGTACAAAGGGAACCAAAATTTCTCTTCAGGCCTAATGAGCAGGAGTGCATCTCTT 296
Query 1 -------------------------------------------------------------------------- 0
Sbjct 297 CTAGCTCGTCTGGATTTCATTGATACCTTTAAGCCCCAGTCCTGGGAGACACAGCTTTAAGACTCCTGGAAACC 370
Query 1 -------------------------------------------------------------------------- 0
Sbjct 371 TTGTTTACGTCCTGGAAATCTTGATTGCAACCGAATTCTGACTCCACTTTAAGGTAGACCTAGGAACGCTTTGG 444
Query 1 -------------------------------------------------------------------------- 0
Sbjct 445 GCCTCAGTTTCCCTCCGTCTATCACCCCAGGACCTGGCAACTGTTGCAGGCTCCCCCCCCAGACATTACAAAGT 518
Query 1 -------------------------------------------------------------------------- 0
Sbjct 519 GTGTGGAGCACGCCCGGCTCTCGGAAGCGCTCTACACCCGCGAGCTGTTACGTCAGTGGGTCCCTCGGCGGCGC 592
Query 1 -------------------------------------------------------------------------- 0
Sbjct 593 CCGGGCTGTCCTCCTAAAATACTAGTACAAGAAGTATAAATGGCCCGGGAGAGTGCAGGGACCGGGCCCACGTG 666
Query 1 -------------------------------------------------------------------------- 0
Sbjct 667 ACCGCTCCACGAAGGCCACCGGCGGGGGCTCGGAGCGCAGGCCGCGCGCTTTCCCGCCGCATCCGGGCGCCGGG 740
Query 1 -------------------------------------------------------------------------- 0
Sbjct 741 CGAGCTCCGGGGACGCCGGGCCCTGGCGGCGGCGGCGGCTCGAGCCGTGCCTCGGGCGGGTGAATCATCCCGGC 814
Query 1 ----------------------------------------ATGGCTGAAGCGGCCACGGGCTTTCTGGAGCAGC 34
|||||.||.||||.|.|||||||.||||||||||
Sbjct 815 CGACAGCGAGCGCCGCGGCGGCCCGTAGCAGCGCCGGAAGATGGCCGAGGCGGGCGCGGGCTTCCTGGAGCAGC 888
Query 35 TCAAGTCCTGCATAGTTTGGTCTTGGACGTATCTGTGGACCGTGTGGTTCTTCATCGTGCTATTCCTGGTCTAC 108
|||||||||||||.||.|||||.|||||.||||||||||||||||||||||||.|||||||.||||||||||||
Sbjct 889 TCAAGTCCTGCATCGTGTGGTCGTGGACCTATCTGTGGACCGTGTGGTTCTTCCTCGTGCTCTTCCTGGTCTAC 962
Query 109 ATCCTGCGGGTGCCTTTGAAAATCAACGACAACTTGAGCACAGTGAGCATGTTTTTGAACACATTAACACCGAA 182
||||||.|||||||..|||..||||||||||||.||||||||||||||||||||||||||||.|||||.||.||
Sbjct 963 ATCCTGAGGGTGCCCCTGAGGATCAACGACAACCTGAGCACAGTGAGCATGTTTTTGAACACGTTAACCCCAAA 1036
Query 183 GTTCTACGTGGCCCTAACAGGCACTTCCTCACTAATATCAGGGCTTATTTTGATATTTGAATGGTGGTATTTTC 256
|||||||||||||||.||||||||||||||.||||||||.||.|||||||||||||||||||||||||||||||
Sbjct 1037 GTTCTACGTGGCCCTGACAGGCACTTCCTCGCTAATATCGGGACTTATTTTGATATTTGAATGGTGGTATTTTC 1110
Query 257 GCAAATACGGAACTTCATTCATTGAACAAGTCTCAGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAAC 330
||||.||.|||||.||.|||||||||||||||||.|||||||||||||||||||||||||||||||||||||||
Sbjct 1111 GCAAGTATGGAACATCTTTCATTGAACAAGTCTCCGTAAGCCACTTGCGCCCCCTTCTGGGAGGGGTTGACAAC 1184
Query 331 AACTCTTCCAACAATTCTAATTCCAGTAACGGGGACTCAGATTCCAATAGGCAAAGTGTCTCAGAATGCAAAGT 404
|||||||||||.|||||||||||||||||.||.||||||||||||||.||.|||||||||||||||||||||||
Sbjct 1185 AACTCTTCCAATAATTCTAATTCCAGTAATGGAGACTCAGATTCCAACAGACAAAGTGTCTCAGAATGCAAAGT 1258
Query 405 ATGGCGAAATCCACTAAATTTATTTAGGGGTGCTGAATACAATCGGTATACTTGGGTGACAGGACGAGAGCCTC 478
|||||||||||||||.|||.|.|||||||||||.|||||.||||||||.||||||||.||||||||||||||||
Sbjct 1259 ATGGCGAAATCCACTGAATCTGTTTAGGGGTGCGGAATATAATCGGTACACTTGGGTCACAGGACGAGAGCCTC 1332
Query 479 TTACTTACTATGACATGAATCTCTCTGCCCAAGACCACCAGACATTCTTTACTTGTGACTCGGACCATCTGCGT 552
|.||.||||||||||||||.|||||||||||.||||||||||||||||||||||||||.||.||.|||||.||.
Sbjct 1333 TGACCTACTATGACATGAACCTCTCTGCCCAGGACCACCAGACATTCTTTACTTGTGATTCAGATCATCTTCGC 1406
Query 553 CCCGCAGATGCAATAATGCAGAAAGCCTGGAGAGAGAGAAACCCCCAAGCTAGGATTTCTGCAGCTCATGAAGC 626
||.|||||||||||||||||.|||||.||||||||.||.|||||.|||||.|||||||||||||||||||||||
Sbjct 1407 CCTGCAGATGCAATAATGCAAAAAGCTTGGAGAGAAAGGAACCCTCAAGCCAGGATTTCTGCAGCTCATGAAGC 1480
Query 627 CTTGGAGATAAATGAAATTAGGTCCAGAGTTGAAGTTCCCCTAATTGCTTCCTCTACCATCTGGGAGATAAAAT 700
||||||||||||.|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1481 CTTGGAGATAAACGAAATTAGGTCCAGAGTTGAAGTTCCCCTAATTGCTTCCTCTACCATCTGGGAGATAAAAT 1554
Query 701 TGTTACCAAAGTGTGCAACTGCTTATATTCTCTTGGCTGAAGAGGAAGCAACAACCATTGCTGAAGCAGAAAAA 774
||||||||||||||||||||||.||.|||||||||||.|||||.|||||.|||||.||||||||||||||||||
Sbjct 1555 TGTTACCAAAGTGTGCAACTGCGTACATTCTCTTGGCGGAAGAAGAAGCGACAACTATTGCTGAAGCAGAAAAA 1628
Query 775 TTATTTAAGCAGGCCCTGAAGGCTGGAGATGGCTGTTACCGACGCTCTCAGCAGCTACAACATCATGGATCCCA 848
.|.|||||||||||||||||||||||||||||.||||||||.||||||||||||||||||||||||||.|||||
Sbjct 1629 CTCTTTAAGCAGGCCCTGAAGGCTGGAGATGGTTGTTACCGGCGCTCTCAGCAGCTACAACATCATGGGTCCCA 1702
Query 849 GTATGAAGCCCAACATAGACGAGACACCAATGTCTTGGTGTACATCAAAAGAAGGCTAGCAATGTGTGCCAGAA 922
|||||||||.|||||.||||||||||||||||||||.||.||.||||||||||||||.||.|||||||||.|.|
Sbjct 1703 GTATGAAGCTCAACACAGACGAGACACCAATGTCTTAGTCTATATCAAAAGAAGGCTGGCGATGTGTGCCCGGA 1776
Query 923 GACTCGGGAGGACCAGGGAAGCAGTGAAAATGATGAGAGATTTAATGAAGGAGTTCCCCCTTCTGAGTATGTTC 996
||||.||.||||||||.|||||||||||.||||||||||||||||||||||||||.|||||.||.||.||||||
Sbjct 1777 GACTTGGAAGGACCAGAGAAGCAGTGAAGATGATGAGAGATTTAATGAAGGAGTTTCCCCTCCTAAGCATGTTC 1850
Query 997 AATATCCATGAAAACCTTTTAGAAGCCCTTCTGGAACTACAAGCATATGCTGATGTTCAGGCAGTCTTAGCAAA 1070
|||||||||||.||||||.|||||||.|||||||||||.|||||.|||||||||||||||||||||||||||||
Sbjct 1851 AATATCCATGAGAACCTTCTAGAAGCTCTTCTGGAACTCCAAGCTTATGCTGATGTTCAGGCAGTCTTAGCAAA 1924
Query 1071 GTATGATGATATAAGCTTACCAAAGTCAGCAACAATATGCTACACAGCTGCTTTGCTCAAAGCAAGAGCTGTCT 1144
|||||||||||||||||||||||||||.||.|||||||||||||||||.||..|||||||||||||||||||||
Sbjct 1925 GTATGATGATATAAGCTTACCAAAGTCGGCGACAATATGCTACACAGCCGCCCTGCTCAAAGCAAGAGCTGTCT 1998
Query 1145 CTGACAA------------------------------------------------------------------- 1151
|||||||
Sbjct 1999 CTGACAAATCGCCAGTACCTACTGCAACATCTTTTCTCCCTACACAGCGACTCCAGCTTGGGAGGGCAGGGCCA 2072
Query 1152 ---------------------------------------------------------------------ATTCT 1156
|||||
Sbjct 2073 GGGTTGCCACAGCTTCCCCTGTGGTGTCTGCCTGCCAAGCACAGCTCTGGAGTTAGCCCTGGGTGTGAGATTCT 2146
Query 1157 CTCCTGAGGCTGCATCTCGGCGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAGGCCATTCATAGAGCTGTG 1230
||||.||||||||.||||||.||||||||||||||||||||||||||||||||||.|||||.||.|||||||||
Sbjct 2147 CTCCAGAGGCTGCGTCTCGGAGGGGGCTGAGCACAGCAGAGATGAATGCAGTAGAAGCCATCCACAGAGCTGTG 2220
Query 1231 GAATTCAATCCTCATGTGCCAAAATACCTACTAGAAATGAAAAGCTTAATCCTACCCCCAGAACATATCCTGAA 1304
|||||.|||||.||.|||||||||||.||||||||||||||||||||||||||.||.||||||||.||||||||
Sbjct 2221 GAATTTAATCCACACGTGCCAAAATATCTACTAGAAATGAAAAGCTTAATCCTCCCACCAGAACACATCCTGAA 2294
Query 1305 GAGAGGAGACAGTGAAGCAATAGCATATGCATTCTTTCATCTTGCACACTGGAAGAGAGTGGAAGGGGCTTTGA 1378
||||||||||||||||||.||||||||||||||||||||||||||||||||||||||.||||||||||||||||
Sbjct 2295 GAGAGGAGACAGTGAAGCGATAGCATATGCATTCTTTCATCTTGCACACTGGAAGAGGGTGGAAGGGGCTTTGA 2368
Query 1379 ATCTTTTGCATTGTACGTGGGAAGGCACTTTTCGGATGATCCCTTATCCCTTGGAAAAGGGGCACCTATTTTAT 1452
||||.||||||||||||||||||||||||||.|||||||||||.||||||.||||.|||||.||||||||||||
Sbjct 2369 ATCTCTTGCATTGTACGTGGGAAGGCACTTTCCGGATGATCCCGTATCCCCTGGAGAAGGGACACCTATTTTAT 2442
Query 1453 CCTTACCCAATCTGTACAGAAACAGCAGACCGAGAGCTGCTTCCATCTTTCCATGAAGTCTCAGTTTACCCAAA 1526
||.|||||||||||||||||||||||.|||||.|||||||||||.|||||||||||||||||||||||||||||
Sbjct 2443 CCATACCCAATCTGTACAGAAACAGCTGACCGGGAGCTGCTTCCCTCTTTCCATGAAGTCTCAGTTTACCCAAA 2516
Query 1527 GAAGGAGCTTCCCTTCTTTATTCTCTTTACTGCTGGATTATGTTCCTTCACAGCCATGCTGGCCCTCCTGACAC 1600
||||||.|||||||||||.||.|||||.|||||||||.|.||.|||||||||||||||||||||||||||||||
Sbjct 2517 GAAGGAACTTCCCTTCTTCATCCTCTTCACTGCTGGACTGTGCTCCTTCACAGCCATGCTGGCCCTCCTGACAC 2590
Query 1601 ATCAGTTCCCGGAACTTATGGGGGTCTTCGCAAAAGCTATGATTGACATTTTCTGCTCGGCAGAGTTCAGGGAC 1674
|||||||.||||||||||||||.|||||||||||||| |||| |||.|| ||
Sbjct 2591 ATCAGTTTCCGGAACTTATGGGAGTCTTCGCAAAAGC------------TTTC--CTCAGC-----------AC 2639
Query 1675 TGGAATTG--------CAAGAGTATTTTCATGCGTGTTGAAGATGAACTGGAAATC--CCTCC----------- 1727
| ||| |..|| |.||| ||..||.||| ||.||||||.| |||||
Sbjct 2640 T----TTGTTTGCCCCCTTGA--ACTTT-----GTTATGGAGA--AAGTGGAAAGCATCCTCCCCTCCAGTTTG 2700
Query 1728 -GGCA------------------------CCT-CAAT--TTCAACATTTCCAAAAC------------------ 1755
|||| ||| |.|| |||| .||||||.|.|
Sbjct 2701 TGGCATCAGCTGACACGGATCTGAGGGAGCCTCCCATCCTTCA--CTTTCCACACCATCCACCATCTCTTCTGT 2772
Query 1756 -------------------------------------------------------------------------- 1755
Sbjct 2773 GCCAACCTCTCATGGACCGCAAGAAAGCATGACTTTGAAAAAGGGAAACCATTCTGAGATTTTAAACTGCTCAT 2846
Query 1756 -------------------------------------------------------------------------- 1755
Sbjct 2847 GGACTATCAGTTCCTTATTAAAGGCTGGTTTTGTTGTACAAAATTTATTGATGTTCAGTTCTATTTTATTTTGC 2920
Query 1756 ------------------------------------------------------------- 1755
Sbjct 2921 CTTCAAAACTGACTGATCAAAAAGTAAAAAAAATAAATAAATAAACTTTTGTGTATTGCAA 2981
